Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Reverse (-)

11829313 .. 11830306

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCAGACTACCTCCCGGAAGATCTTATTTACAAAATCCTCACAGGATTGCCGGCGAAATCGTTGATGCGATTCAAGTGCGTCTCAAAACGGTGGCGTTCCCTCATCTCCGACTCACAATTCGCCAAGACCCATCTCCAGTTAGCTTCCACCCACCAAACCCTAATCCACGGCTTCCTCGTATGCAGCTCCCCTCATATCCCCCAGCTCGAATCTTCCGTCTTGGAATCTCCCTCCTTCGGCGACAGCTCTTCCCCCCGAAAGCTGGCCCACCCAACGGAGGAGGAGGGCTTACCTGTCCTGCTACTCGGTTCATGCAATGGTTTTGTTTTTACTTGCCTCGGGCGGGCTGGGCATCCATCTCGGAATTACTCCATCTGGAACCCTACAACCGGGTTCTTCCTGGATCTACCCGACCCGGAATTTCCCTACTACGACGATCATTACTTTCGCCGCTTTATTCACCATGGCATTGGTTATGTGCATGAAACCGACGAGTATAAAGTTGTGGTATCATCTTATGATGTCTCAACCCTGAAGGTGTTGTCGTTGAGGGATCAGTATTGGAGAGAGAAAACATGTCCGCATCAGTTTGTAGATCATGAGACTGAAGGGGTTGGACTACAAGAGACGCTGCACTGGGTTGTTTTCGACTATGAACATGAACCCCCACTGGACCCTGAACCGTACATGGTTGCTTTCGAGCTGAGAAATGAGGATTTTCGAATAATGCAGCTTCCTTTGGCTGCTACTGGAGAAGATCTGAGTCTGGCGCTGTTTTCATGGAGAGGATGCATGTATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

269

Amino Acids

30.85

Weight (kDa)

5.46

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 41	4.1e-08	F-box-like
F-box	PF00646	5 - 41	3.3e-10	F-box domain
FBA_3	PF08268	83 - 264	4.2e-11	F-box associated beta propeller domain
FBA_1	PF07734	103 - 259	5.8e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	346, 454, 584
AclWI	GGATC	2 cut(s)	414, 564
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	557, 630
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	6 cut(s)	239, 265, 277, 280, 346, 392
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	7 cut(s)	146, 189, 208, 249, 265, 706, 736
AluI	AGCT	7 cut(s)	146, 189, 208, 249, 265, 706, 736
Alw26I	GTCTC	4 cut(s)	88, 532, 599, 623
AlwI	GGATC	2 cut(s)	414, 564
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	4 cut(s)	186, 634, 733, 746
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	4 cut(s)	104, 136, 204, 236
AspLEI	GCGC	1 cut(s)	775
AspS9I	GGNCC	2 cut(s)	268, 676
AsuC2I	CCSGG	3 cut(s)	17, 394, 419
AsuHPI	GGTGA	1 cut(s)	455
AsuII	TTCGAA	1 cut(s)	724
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	676
BbvI	GCAGC	4 cut(s)	198, 621, 733, 745
BccI	CCATC	3 cut(s)	141, 367, 383
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	4 cut(s)	60, 94, 344, 378
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	3 cut(s)	17, 394, 419
BcoDI	GTCTC	4 cut(s)	88, 532, 599, 623
BfoI	RGCGCY	1 cut(s)	776
BglII	AGATCT	2 cut(s)	22, 760
BisI	GCNGC	5 cut(s)	187, 454, 635, 734, 747
BlsI	GCNGC	5 cut(s)	188, 455, 636, 735, 748
Bme1390I	CCNGG	4 cut(s)	17, 394, 404, 419
Bme18I	GGWCC	1 cut(s)	676
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	268, 676
BmiI	GGNNCC	2 cut(s)	383, 678
BmrFI	CCNGG	4 cut(s)	17, 394, 404, 419
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	4 cut(s)	57, 364, 595, 782
BmuI	ACTGGG	1 cut(s)	649
BpmI	CTGGAG	2 cut(s)	122, 774
Bpu14I	TTCGAA	1 cut(s)	724
BpuMI	CCSGG	3 cut(s)	17, 394, 419
BsaJI	CCNNGG	3 cut(s)	169, 340, 466
Bsc4I	CCNNNNNNNGG	6 cut(s)	239, 265, 277, 280, 346, 392
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	4 cut(s)	139, 644, 678, 757
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	169, 340, 466
BseGI	GGATG	2 cut(s)	355, 797
BseLI	CCNNNNNNNGG	6 cut(s)	239, 265, 277, 280, 346, 392
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	698, 755
BseNI	ACTGG	4 cut(s)	139, 644, 678, 757
BseRI	GAGGAG	2 cut(s)	296, 299
BseXI	GCAGC	4 cut(s)	198, 621, 733, 745
BseYI	CCCAGC	2 cut(s)	204, 350
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	17, 53, 393, 419
BslI	CCNNNNNNNGG	6 cut(s)	239, 265, 277, 280, 346, 392
BsmAI	GTCTC	4 cut(s)	88, 532, 599, 623
BsmBI	CGTCTC	2 cut(s)	88, 623
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	724
Bsp143I	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	3 cut(s)	346, 454, 584
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	699, 756
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	383, 678
BspPI	GGATC	2 cut(s)	414, 564
BspQI	GCTCTTC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	4 cut(s)	139, 644, 678, 757
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	169, 340, 466
BssMI	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	93, 687
Bst6I	CTCTTC	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	3 cut(s)	54, 267, 348
BstDEI	CTNAG	2 cut(s)	707, 764
BstDSI	CCRYGG	2 cut(s)	169, 466
BstF5I	GGATG	2 cut(s)	355, 797
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	6 cut(s)	25, 409, 442, 559, 601, 763
BstMAI	GTCTC	4 cut(s)	88, 532, 599, 623
BstMBI	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	582, 799
BstSCI	CCNGG	4 cut(s)	15, 392, 402, 417
BstV1I	GCAGC	4 cut(s)	198, 621, 733, 745
BstX2I	RGATCY	3 cut(s)	22, 406, 760
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	3 cut(s)	22, 406, 760
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	2 cut(s)	169, 466
BtsCI	GGATG	2 cut(s)	355, 797
BtsIMutI	CAGTG	2 cut(s)	637, 671
Cac8I	GCNNGC	3 cut(s)	54, 267, 348
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	1 cut(s)	775
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	268, 676
CseI	GACGC	2 cut(s)	70, 640
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	9 cut(s)	315, 467, 485, 579, 602, 662, 691, 783, 796
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	2 cut(s)	707, 764
DpnI	GATC	6 cut(s)	24, 408, 441, 558, 600, 762
DpnII	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	676
Eco57I	CTGAAG	2 cut(s)	557, 630
Eco88I	CYCGRG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	2 cut(s)	88, 623
FaeI	CATG	9 cut(s)	318, 470, 488, 582, 605, 665, 694, 786, 799
FatI	CATG	9 cut(s)	314, 466, 484, 578, 601, 661, 690, 782, 795
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	5 cut(s)	187, 454, 635, 734, 747
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	5 cut(s)	187, 454, 635, 734, 747
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	5 cut(s)	187, 454, 635, 734, 747
GsaI	CCCAGC	2 cut(s)	208, 354
GsuI	CTGGAG	2 cut(s)	122, 774
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	4 cut(s)	17, 53, 393, 419
HgaI	GACGC	2 cut(s)	70, 640
HhaI	GCGC	1 cut(s)	775
Hin1II	CATG	9 cut(s)	318, 470, 488, 582, 605, 665, 694, 786, 799
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HinfI	GANTC	5 cut(s)	72, 113, 212, 227, 766
HpaII	CCGG	4 cut(s)	17, 53, 393, 419
HphI	GGTGA	1 cut(s)	455
Hpy188I	TCNGA	4 cut(s)	7, 112, 366, 765
Hpy188III	TCNNGA	2 cut(s)	379, 602
Hpy99I	CGWCG	2 cut(s)	440, 497
HpyAV	CCTTC	3 cut(s)	247, 532, 605
HpyCH4III	ACNGT	2 cut(s)	93, 687
HpyCH4V	TGCA	6 cut(s)	186, 318, 484, 637, 733, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	707, 764
Hsp92II	CATG	9 cut(s)	318, 470, 488, 582, 605, 665, 694, 786, 799
HspAI	GCGC	1 cut(s)	773
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	4 cut(s)	198, 621, 733, 745
LweI	GCATC	4 cut(s)	57, 364, 595, 782
MalI	GATC	6 cut(s)	24, 408, 441, 558, 600, 762
MboI	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
MboII	GAAGA	5 cut(s)	32, 207, 243, 391, 770
MflI	RGATCY	3 cut(s)	22, 406, 760
MluCI	AATT	3 cut(s)	119, 367, 422
MlyI	GAGTC	2 cut(s)	107, 775
MmeI	TCCRAC	2 cut(s)	135, 598
Mph1103I	ATGCAT	1 cut(s)	797
MroNI	GCCGGC	1 cut(s)	52
MspI	CCGG	4 cut(s)	17, 53, 393, 419
MspR9I	CCNGG	4 cut(s)	17, 394, 404, 419
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	352
NaeI	GCCGGC	1 cut(s)	54
NciI	CCSGG	3 cut(s)	17, 394, 419
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	9 cut(s)	318, 470, 488, 582, 605, 665, 694, 786, 799
NlaIV	GGNNCC	2 cut(s)	383, 678
NsiI	ATGCAT	1 cut(s)	797
NspI	RCATGY	2 cut(s)	582, 799
NspV	TTCGAA	1 cut(s)	724
PagI	TCATGA	1 cut(s)	601
PciI	ACATGT	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 216
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	72, 212, 227
PfoI	TCCNGGA	2 cut(s)	15, 402
PkrI	GCNGC	5 cut(s)	188, 455, 636, 735, 748
PleI	GAGTC	2 cut(s)	107, 774
PpsI	GAGTC	2 cut(s)	107, 774
PscI	ACATGT	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	402
PspFI	CCCAGC	2 cut(s)	204, 350
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	383, 678
PspPI	GGNCC	2 cut(s)	268, 676
PsuI	RGATCY	3 cut(s)	22, 406, 760
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	256
SatI	GCNGC	5 cut(s)	187, 454, 635, 734, 747
Sau3AI	GATC	6 cut(s)	22, 406, 439, 556, 598, 760
Sau96I	GGNCC	2 cut(s)	268, 676
SchI	GAGTC	2 cut(s)	107, 775
ScrFI	CCNGG	4 cut(s)	17, 394, 404, 419
SfaNI	GCATC	4 cut(s)	57, 364, 595, 782
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	1 cut(s)	676
Sse9I	AATT	3 cut(s)	119, 367, 422
SsiI	CCGC	3 cut(s)	346, 454, 584
StyD4I	CCNGG	4 cut(s)	15, 392, 402, 417
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	93, 687
TaqI	TCGA	4 cut(s)	210, 651, 702, 724
TasI	AATT	3 cut(s)	119, 367, 422
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	3 cut(s)	72, 212, 227
TscAI	CASTG	2 cut(s)	644, 678
TseI	GCWGC	4 cut(s)	186, 634, 733, 746
TspDTI	ATGAA	5 cut(s)	303, 501, 672, 678, 771
TspGWI	ACGGA	2 cut(s)	208, 293
TspRI	CASTG	2 cut(s)	644, 678
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	2 cut(s)	582, 799
Zsp2I	ATGCAT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.