Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005092.1

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3096

Gene Structure 3096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005092.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgtcgaattccataacccagttgatgtttctgattcttgtctttgtaccaatagctgtatcatcagaaccacaacaaccagtcgaggctttgctgcgtcgtctggactccaaacgctcctctgcttcagttcaagaagctgcagctaaagctgttctcaaacgattgctgcccacccatgttgacagtttcgacttcaagattgttgacaaggatgtttgtggtggacatagttgctttgtgataaacaatcataacctgtcaagtcgaaatggccccgagatacagattaaaggtaccacagcagttgaaattgcttctggcctccattggtatttgaagtattggtgtggtgctcatgtttcttgggacaagactggtggcgtgcaattagcttccatccccaatccaggatcactacctcgtgtaaaagacaaggggttgaaaattcaacggccggtcccatggaactattaccaaaatgtcgttacatccagttattcatttgtttggtgggattgggaaagatggcagaaagaaatagactggatggctcttcaggggatcaacctgcctttagcattcacagggcaagaatcaatttggcagaaagttttcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

NAGLU NAGLU_C NAGLU_N

Protein Analysis

207

Amino Acids

23.46

Weight (kDa)

8.97

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	579
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	421, 572
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	7, 447
AcuI	CTGAAG	2 cut(s)	111, 542
AfaI	GTAC	2 cut(s)	48, 298
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	6 cut(s)	134, 199, 311, 340, 445, 452
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	5 cut(s)	56, 140, 146, 152, 395
AluI	AGCT	5 cut(s)	56, 140, 146, 152, 395
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	421, 572
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	274, 322, 455
ApeKI	GCWGC	4 cut(s)	94, 140, 143, 169
ApoI	RAATTY	2 cut(s)	7, 447
Asp700I	GAANNNNTTC	1 cut(s)	614
Asp718I	GGTACC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	275, 460
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	81, 127, 155, 156
BccI	CCATC	3 cut(s)	407, 522, 544
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	579
BisI	GCNGC	4 cut(s)	95, 141, 144, 170
BlsI	GCNGC	4 cut(s)	96, 142, 145, 171
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	275, 460
BmiI	GGNNCC	3 cut(s)	277, 298, 462
BmrFI	CCNGG	1 cut(s)	411
BmrI	ACTGGG	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	5 cut(s)	19, 80, 382, 495, 551
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	4 cut(s)	220, 399, 491, 555
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	5 cut(s)	19, 80, 382, 495, 551
BseRI	GAGGAG	1 cut(s)	109
BseX3I	CGGCCG	1 cut(s)	455
BseXI	GCAGC	4 cut(s)	81, 127, 155, 156
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	3 cut(s)	276, 324, 457
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	383, 446
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	383, 446
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	276, 324, 457
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	413, 564
Bsp19I	CCATGG	1 cut(s)	464
BspANI	GGCC	3 cut(s)	276, 324, 457
BspLI	GGNNCC	3 cut(s)	277, 298, 462
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	421, 572
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	5 cut(s)	19, 80, 382, 495, 551
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	2 cut(s)	413, 564
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	464
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	4 cut(s)	220, 399, 491, 555
BstKTI	GATC	2 cut(s)	416, 567
BstMBI	GATC	2 cut(s)	413, 564
BstMCI	CGRYCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	81, 127, 155, 156
BstZI	CGGCCG	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	276, 324, 457
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	4 cut(s)	220, 399, 491, 555
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	275, 460
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	47, 297
CspCI	CAANNNNNGTGG	6 cut(s)	163, 198, 289, 324, 361, 396
CviAII	CATG	4 cut(s)	179, 359, 465, 619
CviQI	GTAC	2 cut(s)	47, 297
DpnI	GATC	2 cut(s)	415, 566
DpnII	GATC	2 cut(s)	413, 564
EaeI	YGGCCR	1 cut(s)	455
EagI	CGGCCG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EclXI	CGGCCG	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	460
Eco52I	CGGCCG	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	111, 542
Eco88I	CYCGRG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	3 cut(s)	182, 362, 468
FaiI	YATR	7 cut(s)	14, 180, 231, 255, 360, 466, 620
FaqI	GGGAC	2 cut(s)	383, 446
FatI	CATG	3 cut(s)	178, 358, 464
Fnu4HI	GCNGC	4 cut(s)	95, 141, 144, 170
FokI	GGATG	4 cut(s)	227, 386, 478, 562
Fsp4HI	GCNGC	4 cut(s)	95, 141, 144, 170
GluI	GCNGC	4 cut(s)	95, 141, 144, 170
HaeIII	GGCC	3 cut(s)	276, 324, 457
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	182, 362, 468
HincII	GTYRAC	2 cut(s)	184, 208
HindII	GTYRAC	2 cut(s)	184, 208
HinfI	GANTC	3 cut(s)	34, 107, 596
HpaII	CCGG	1 cut(s)	458
Hpy166II	GTNNAC	3 cut(s)	184, 208, 227
Hpy188I	TCNGA	2 cut(s)	33, 67
Hpy188III	TCNNGA	3 cut(s)	104, 134, 199
Hpy8I	GTNNAC	3 cut(s)	184, 208, 227
Hpy99I	CGWCG	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	143, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	182, 362, 468
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	413, 564
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	4 cut(s)	81, 127, 155, 156
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	2 cut(s)	415, 566
MboI	GATC	2 cut(s)	413, 564
MboII	GAAGA	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	5 cut(s)	7, 312, 389, 447, 600
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	79, 130, 335, 432
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	2 cut(s)	413, 564
NlaIII	CATG	3 cut(s)	182, 362, 468
NlaIV	GGNNCC	3 cut(s)	277, 298, 462
PciSI	GCTCTTC	1 cut(s)	561
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	34, 596
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	96, 142, 145, 171
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	3 cut(s)	277, 298, 462
PspPI	GGNCC	2 cut(s)	275, 460
PstI	CTGCAG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	48, 298
RsaNI	GTAC	2 cut(s)	47, 297
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	95, 141, 144, 170
Sau3AI	GATC	2 cut(s)	413, 564
Sau96I	GGNCC	2 cut(s)	275, 460
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	9 cut(s)	58, 142, 148, 154, 261, 298, 397, 424, 573
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	460
Sse9I	AATT	5 cut(s)	7, 312, 389, 447, 600
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	4 cut(s)	5, 84, 192, 268
TasI	AATT	5 cut(s)	7, 312, 389, 447, 600
TfiI	GAWTC	2 cut(s)	34, 596
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	4 cut(s)	94, 140, 143, 169
TspDTI	ATGAA	2 cut(s)	492, 607
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	2 cut(s)	7, 447
XmnI	GAANNNNTTC	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.