Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Reverse (-)

21223298 .. 21223885

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG208700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATCTACCCGACCCGTTTCCCGATTGCCACGAGGAAAGTTTTTACTATAAACTTGTTCAACATGGCATTGGTTATCTGTCGGAGACTGACGAGTATAAAGTTACGGTATCAGCTGATTATGAGGTGAGGGTGTTGTCGTTGAGGGATCAGAATTGGAGAGAGATGGAAACTCCTCATGGGTCTGCAGTTGAGGCTCGGGGGGTTGGGCTACACCAGACGCTACACTGGGTGTGTTTCGGCTGTAATCGTGTTCCATACATCAGTGCTTTGGAACTGAGAAATGAGGAGTTTCGGACAATGCAGCTTCCTATGGCTTCCATTGGAAAAGACGAGAGTCTGAGACGAGAGTCTGGCGCTGTTTTCGTGGAGAGGATGCCTGTGTGCATGGCAGTATGGGACTCTGTCTGTGCAGACAGTGCAGTGTTGGGTGATGGAAAATTGGAAACCTATGGAGTTCCTGATTCTTGGACTAGGGCTTACAGCTTTAGTGTTCCCAATCCGCCTGAACGGACTACGTATCTGAGACCACTGTTGATCACTGAAAAGAGTAGACTTGTTCCTTTGACAAGGAGAACGGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

195

Amino Acids

22.18

Weight (kDa)

5.28

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	2 cut(s)	12, 156
AdeI	CACNNNGTG	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	62
AluBI	AGCT	3 cut(s)	116, 307, 486
AluI	AGCT	3 cut(s)	116, 307, 486
Alw26I	GTCTC	3 cut(s)	80, 337, 520
AlwI	GGATC	2 cut(s)	12, 156
Ama87I	CYCGRG	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	139, 443
AvaI	CYCGRG	1 cut(s)	198
BauI	CACGAG	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	160, 428
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	3 cut(s)	80, 337, 520
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	238
BoxI	GACNNNNGTC	2 cut(s)	336, 349
BsaAI	YACGTR	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	520
BsaXI	ACNNNNNCTCC	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	269, 332, 515
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	165, 302
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	2 cut(s)	432, 441
BsiHKCI	CYCGRG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	413
BsmAI	GTCTC	3 cut(s)	80, 337, 520
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	413
Bso31I	GGTCTC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	4, 148, 537
BspACI	CCGC	1 cut(s)	503
BspCNI	CTCAG	3 cut(s)	270, 333, 516
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	12, 156
BspTNI	GGTCTC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	233
BssMI	GATC	3 cut(s)	4, 148, 537
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	109, 419, 534
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	519
BstDEI	CTNAG	3 cut(s)	278, 341, 524
BstF5I	GGATG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	7, 151, 540
BstMAI	GTCTC	3 cut(s)	80, 337, 520
BstMBI	GATC	3 cut(s)	4, 148, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 419
BstPAI	GACNNNNGTC	2 cut(s)	336, 349
BstSFI	CTRYAG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	6 cut(s)	226, 271, 424, 429, 530, 540
CfoI	GCGC	1 cut(s)	359
CseI	GACGC	1 cut(s)	229
CviAII	CATG	3 cut(s)	65, 179, 388
CviJI	RGCY	8 cut(s)	116, 197, 211, 243, 307, 317, 479, 486
CviKI_1	RGCY	8 cut(s)	116, 197, 211, 243, 307, 317, 479, 486
DdeI	CTNAG	3 cut(s)	278, 341, 524
DpnI	GATC	3 cut(s)	6, 150, 539
DpnII	GATC	3 cut(s)	4, 148, 537
DraIII	CACNNNGTG	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	492
Eco105I	TACGTA	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	68, 182, 391
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	64, 178, 387
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	360
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	68, 182, 391
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	4 cut(s)	337, 350, 401, 464
HphI	GGTGA	2 cut(s)	139, 443
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	5 cut(s)	85, 153, 297, 342, 525
Hpy188III	TCNNGA	2 cut(s)	23, 461
Hpy8I	GTNNAC	1 cut(s)	554
HpyCH4III	ACNGT	3 cut(s)	109, 419, 534
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	5 cut(s)	188, 304, 387, 413, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 419
HpyF3I	CTNAG	3 cut(s)	278, 341, 524
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	3 cut(s)	68, 182, 391
HspAI	GCGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	3 cut(s)	4, 148, 537
LpnPI	CCDG	6 cut(s)	214, 230, 339, 393, 474, 519
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	6, 150, 539
MboI	GATC	3 cut(s)	4, 148, 537
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	154, 440
MlyI	GAGTC	3 cut(s)	346, 359, 395
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	28, 118, 123, 138, 186, 187, 280, 366
MspA1I	CMGCKG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	194, 419
NdeII	GATC	3 cut(s)	4, 148, 537
NlaIII	CATG	3 cut(s)	68, 182, 391
PfeI	GAWTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	3 cut(s)	345, 358, 395
PpsI	GAGTC	3 cut(s)	345, 358, 395
Ppu21I	YACGTR	1 cut(s)	519
PshAI	GACNNNNGTC	2 cut(s)	336, 349
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	116
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	3 cut(s)	4, 148, 537
SchI	GAGTC	3 cut(s)	346, 359, 395
SetI	ASST	6 cut(s)	118, 129, 309, 452, 488, 521
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	186
SnaBI	TACGTA	1 cut(s)	519
Sse9I	AATT	2 cut(s)	154, 440
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	109, 419, 534
TaiI	ACGT	1 cut(s)	521
TasI	AATT	2 cut(s)	154, 440
TfiI	GAWTC	1 cut(s)	464
TscAI	CASTG	6 cut(s)	233, 271, 424, 429, 537, 547
TseI	GCWGC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	6 cut(s)	233, 271, 424, 429, 537, 547
Tth111I	GACNNNGTC	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.