FvH4_1g19570

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000933
Physical Location & Seq
Reverse (-)
11823707 .. 11826686
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19570.t1

Sequence Viewer

Length: 1263 bp
ATGGAGTGTCAGTACTCAAACGCACACAAATCTCATTCATCTGCAATGTCGGACTACCTCCCAGAAGATGTTTATTTCAAAATCCTATCAAGATTGCCGGCGAAATCGTTGATGCGATTCAAGTGCGTCTCAAAACGGTGGCGTTCTCTCATCTCCGACTCCCATTTCGCCAAAACCCATCTCCACCAAACCCTGACCCACGGCTTCCTCGTATGCACCTCCCCTCACATCCCCCAGCTCGAATCTTCCGTCTTGGAATCTCCGTCATTCGGCGACCGCTCTTCCGCCCGAAAGCTGGCCTTCCCGTCCAAACTAACGGAGGAGGAGGAGGAACGCTTGCATGTCATGTTACTCGGTTCATGCAACGGTTTTGTTTTCGCCTGTCTCCGGCGGCTTCGTAATCCGTGTCGGAATTACTCAATCTGGAACCCCACGACCGGGTTCTTCATGGATCTACCCGACCCGAAATTTCCTGATGACGAAGAGGACGAGTTTTTCCATCGCCTCGATCATCATGGCATTGGTTATCTGCAGGAAACCGACGAGTATAAAGTTGTGGTATCAGCGGCTGGCTGGAATATTATGAAGGTGTTGTCGCTGAGGGATCAAAATTGGAGAGAGATAACATATCCGCATATGTTTGTGCATGAGCCTGAAGGGGTTGGACTACACGAGACGCTGTACTGGGTTGCTTCCGACAATGAACCAGATCCCGTACGGGAGTCTGAACCCTACCTGATTGCTTTCGAGCTGAGAAATGAAGATTTTCGGATAATGCAGCTTCCTATGGCTTCCATTGCAGAAGATGAGAATCTGGCGCTGTTTTCGTGGAGAGGGTGCCTGTGTTTATGGGTGTATCGGACTCGTTCTGCGCAGACTGTGCAGTGTTGGGTGATGGAAAAGTGTGGAGATGCTGATTCTTGGACCAGGAGTTATAAATTTGGTGTTCCCAATCCGCCAGTATGGACCAGGTATCTGAGACCGCTGTTGATCACTGAAAACAGTAGAGTTCTCGTGAGGTATTCAGTTGAGAATTCGTCAAAAATATTGGAGTTGGTCAAAGTTGTTGATAAAGAAGAGAATCAAGAAGAGGAGGTGGTTACTTATATGCATGGGTGGCACGGGAGGAGATTTCAGTGGGGGAGTCTTATGATTGTATACGATGAGACTTTATTTTGCAGTGTGATGGTGGAACCAAAGCAGCCAGAGAGAAAGGGCAAGAAACTGAAAACGCAGCACCAGGGCCTCACAAAGCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

421

Amino Acids

49.13

Weight (kDa)

6.29

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 56 2.3e-09 F-box-like
F-box PF00646 20 - 56 1e-11 F-box domain
FBA_1 PF07734 94 - 356 2e-18 F-box associated beta propeller domain
FBA_3 PF08268 104 - 315 1.5e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
Acc16I TGCGCA 1 cut(s) 873
AccB1I GGYRCC 1 cut(s) 837
AccBSI CCGCTC 1 cut(s) 279
AccI GTMKAC 1 cut(s) 1158
AciI CCGC 7 cut(s) 277, 285, 391, 566, 632, 956, 983
AclWI GGATC 3 cut(s) 459, 612, 704
AcsI RAATTY 3 cut(s) 467, 938, 1033
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 3 cut(s) 14, 683, 717
AfiI CCNNNNNNNGG 5 cut(s) 269, 295, 387, 437, 438
AgsI TTSAA 2 cut(s) 79, 121
AjnI CCWGG 3 cut(s) 926, 968, 1239
AluBI AGCT 5 cut(s) 238, 295, 751, 781, 1255
AluI AGCT 5 cut(s) 238, 295, 751, 781, 1255
Alw26I GTCTC 5 cut(s) 133, 389, 668, 973, 1160
AlwI GGATC 3 cut(s) 459, 612, 704
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 2 cut(s) 297, 1243
ApeKI GCWGC 3 cut(s) 778, 1201, 1234
ApoI RAATTY 3 cut(s) 467, 938, 1033
ArsI GACNNNNNNTTYG 4 cut(s) 149, 181, 234, 266
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 2 cut(s) 820, 874
AspS9I GGNCC 3 cut(s) 924, 966, 1243
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 904
AvaII GGWCC 2 cut(s) 924, 966
BanI GGYRCC 1 cut(s) 837
BauI CACGAG 2 cut(s) 671, 1013
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 3 cut(s) 790, 1213, 1246
BccI CCATC 4 cut(s) 186, 507, 889, 1180
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciT130I CCWGG 3 cut(s) 928, 970, 1241
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 5 cut(s) 133, 389, 668, 973, 1160
BfmI CTRYAG 1 cut(s) 530
BfoI RGCGCY 1 cut(s) 821
BisI GCNGC 5 cut(s) 392, 567, 779, 1202, 1235
BlsI GCNGC 5 cut(s) 393, 568, 780, 1203, 1236
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 4 cut(s) 439, 928, 970, 1241
Bme18I GGWCC 2 cut(s) 924, 966
BmgT120I GGNCC 3 cut(s) 924, 966, 1243
BmiI GGNNCC 3 cut(s) 428, 839, 1194
BmrFI CCNGG 4 cut(s) 439, 928, 970, 1241
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 102, 901
BmuI ACTGGG 1 cut(s) 694
Bpu10I CCTNAGC 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 810
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 2 cut(s) 199, 1240
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 295, 387, 437, 438
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 689, 959
Bse3DI GCAATG 2 cut(s) 51, 795
Bse8I GATNNNNATC 1 cut(s) 810
BseBI CCWGG 3 cut(s) 928, 970, 1241
BseDI CCNNGG 2 cut(s) 199, 1240
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 5 cut(s) 269, 295, 387, 437, 438
BseMI GCAATG 2 cut(s) 51, 795
BseMII CTCAG 3 cut(s) 590, 743, 968
BseNI ACTGG 2 cut(s) 689, 959
BseRI GAGGAG 5 cut(s) 335, 338, 341, 1106, 1141
BseXI GCAGC 3 cut(s) 790, 1213, 1246
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 902
Bsh1285I CGRYCG 2 cut(s) 277, 438
BshFI GGCC 2 cut(s) 299, 1245
BshNI GGYRCC 1 cut(s) 837
BsiEI CGRYCG 2 cut(s) 277, 438
BsiSI CCGG 3 cut(s) 98, 388, 438
BsiWI CGTACG 1 cut(s) 715
BslI CCNNNNNNNGG 5 cut(s) 269, 295, 387, 437, 438
BsmAI GTCTC 5 cut(s) 133, 389, 668, 973, 1160
BsmBI CGTCTC 2 cut(s) 133, 668
BsnI GGCC 2 cut(s) 299, 1245
Bso31I GGTCTC 1 cut(s) 973
Bsp143I GATC 5 cut(s) 451, 508, 604, 709, 990
BspACI CCGC 7 cut(s) 277, 285, 391, 566, 632, 956, 983
BspANI GGCC 2 cut(s) 299, 1245
BspCNI CTCAG 3 cut(s) 591, 744, 969
BspLI GGNNCC 3 cut(s) 428, 839, 1194
BspMAI CTGCAG 1 cut(s) 534
BspPI GGATC 3 cut(s) 459, 612, 704
BspQI GCTCTTC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 837
BspTNI GGTCTC 1 cut(s) 973
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 2 cut(s) 51, 795
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 2 cut(s) 689, 959
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 199, 1240
BssMI GATC 5 cut(s) 451, 508, 604, 709, 990
BssNAI GTATAC 1 cut(s) 1159
BssSI CACGAG 2 cut(s) 671, 1013
Bst1107I GTATAC 1 cut(s) 1159
Bst2BI CACGAG 2 cut(s) 671, 1013
Bst2UI CCWGG 3 cut(s) 928, 970, 1241
Bst4CI ACNGT 4 cut(s) 138, 368, 880, 1004
Bst6I CTCTTC 4 cut(s) 286, 477, 1071, 1083
BstAPI GCANNNNNTGC 1 cut(s) 880
BstC8I GCNNGC 4 cut(s) 99, 297, 338, 571
BstDEI CTNAG 3 cut(s) 599, 752, 977
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 2 cut(s) 820, 874
BstKTI GATC 5 cut(s) 454, 511, 607, 712, 993
BstMAI GTCTC 5 cut(s) 133, 389, 668, 973, 1160
BstMBI GATC 5 cut(s) 451, 508, 604, 709, 990
BstMCI CGRYCG 2 cut(s) 277, 438
BstMWI GCNNNNNNNGC 3 cut(s) 797, 880, 1117
BstNI CCWGG 3 cut(s) 928, 970, 1241
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 4 cut(s) 437, 926, 968, 1239
BstSFI CTRYAG 1 cut(s) 530
BstV1I GCAGC 3 cut(s) 790, 1213, 1246
BstX2I RGATCY 2 cut(s) 451, 709
BstYI RGATCY 2 cut(s) 451, 709
BstZ17I GTATAC 1 cut(s) 1159
BsuRI GGCC 2 cut(s) 299, 1245
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 1 cut(s) 228
BtsI GCAGTG 2 cut(s) 890, 1186
BtsIMutI CAGTG 4 cut(s) 890, 993, 1142, 1186
Cac8I GCNNGC 4 cut(s) 99, 297, 338, 571
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 2 cut(s) 820, 874
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 924, 966, 1243
CseI GACGC 2 cut(s) 115, 685
CsiI ACCWGGT 1 cut(s) 968
Csp6I GTAC 3 cut(s) 13, 682, 716
CviAII CATG 7 cut(s) 341, 346, 360, 448, 515, 647, 1112
CviQI GTAC 3 cut(s) 13, 682, 716
DdeI CTNAG 3 cut(s) 599, 752, 977
DpnI GATC 5 cut(s) 453, 510, 606, 711, 992
DpnII GATC 5 cut(s) 451, 508, 604, 709, 990
Eam1104I CTCTTC 4 cut(s) 286, 477, 1071, 1083
EarI CTCTTC 4 cut(s) 286, 477, 1071, 1083
EciI GGCGGA 2 cut(s) 274, 945
Eco31I GGTCTC 1 cut(s) 973
Eco47I GGWCC 2 cut(s) 924, 966
Eco57I CTGAAG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 1033
EcoRII CCWGG 3 cut(s) 926, 968, 1239
EcoT22I ATGCAT 1 cut(s) 1113
Esp3I CGTCTC 2 cut(s) 133, 668
FaeI CATG 7 cut(s) 344, 349, 363, 451, 518, 650, 1115
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 7 cut(s) 340, 345, 359, 447, 514, 646, 1111
FauNDI CATATG 1 cut(s) 636
FbaI TGATCA 1 cut(s) 990
FblI GTMKAC 1 cut(s) 1158
Fnu4HI GCNGC 5 cut(s) 392, 567, 779, 1202, 1235
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 5 cut(s) 392, 567, 779, 1202, 1235
FspI TGCGCA 1 cut(s) 873
GlaI GCGC 2 cut(s) 819, 873
GluI GCNGC 5 cut(s) 392, 567, 779, 1202, 1235
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 2 cut(s) 299, 1245
HapII CCGG 3 cut(s) 98, 388, 438
HgaI GACGC 2 cut(s) 115, 685
HhaI GCGC 2 cut(s) 820, 874
Hin1II CATG 7 cut(s) 344, 349, 363, 451, 518, 650, 1115
Hin6I GCGC 2 cut(s) 818, 872
HinP1I GCGC 2 cut(s) 818, 872
HpaII CCGG 3 cut(s) 98, 388, 438
HphI GGTGA 1 cut(s) 904
Hpy166II GTNNAC 1 cut(s) 1159
Hpy188I TCNGA 8 cut(s) 52, 157, 411, 697, 727, 771, 861, 978
Hpy188III TCNNGA 5 cut(s) 90, 424, 473, 1015, 1085
Hpy8I GTNNAC 1 cut(s) 1159
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 3 cut(s) 310, 580, 650
HpyCH4III ACNGT 4 cut(s) 138, 368, 880, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 797, 880, 1117
HpyF3I CTNAG 3 cut(s) 599, 752, 977
Hsp92II CATG 7 cut(s) 344, 349, 363, 451, 518, 650, 1115
HspAI GCGC 2 cut(s) 818, 872
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 5 cut(s) 451, 508, 604, 709, 990
LguI GCTCTTC 1 cut(s) 286
Lsp1109I GCAGC 3 cut(s) 790, 1213, 1246
LweI GCATC 2 cut(s) 102, 901
MabI ACCWGGT 1 cut(s) 968
MaeIII GTNAC 2 cut(s) 348, 1099
MalI GATC 5 cut(s) 453, 510, 606, 711, 992
MbiI CCGCTC 1 cut(s) 279
MboI GATC 5 cut(s) 451, 508, 604, 709, 990
MboII GAAGA 9 cut(s) 77, 237, 273, 436, 494, 773, 815, 1088, 1100
MflI RGATCY 2 cut(s) 451, 709
MluCI AATT 5 cut(s) 412, 467, 610, 938, 1033
MlyI GAGTC 4 cut(s) 152, 731, 856, 1153
MmeI TCCRAC 5 cut(s) 30, 180, 389, 643, 720
Mph1103I ATGCAT 1 cut(s) 1113
MroNI GCCGGC 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 765
MspA1I CMGCKG 2 cut(s) 566, 985
MspI CCGG 3 cut(s) 98, 388, 438
MspR9I CCNGG 4 cut(s) 439, 928, 970, 1241
MvaI CCWGG 3 cut(s) 928, 970, 1241
MwoI GCNNNNNNNGC 3 cut(s) 797, 880, 1117
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 439
NdeI CATATG 1 cut(s) 636
NdeII GATC 5 cut(s) 451, 508, 604, 709, 990
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 7 cut(s) 344, 349, 363, 451, 518, 650, 1115
NlaIV GGNNCC 3 cut(s) 428, 839, 1194
NsbI TGCGCA 1 cut(s) 873
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 246, 486
PdiI GCCGGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 6 cut(s) 117, 242, 257, 811, 917, 1081
Pfl23II CGTACG 1 cut(s) 715
PkrI GCNGC 5 cut(s) 393, 568, 780, 1203, 1236
PleI GAGTC 4 cut(s) 152, 730, 856, 1152
PpsI GAGTC 4 cut(s) 152, 730, 856, 1152
PsiI TTATAA 1 cut(s) 936
Psp6I CCWGG 3 cut(s) 926, 968, 1239
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 3 cut(s) 926, 968, 1239
PspLI CGTACG 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 428, 839, 1194
PspPI GGNCC 3 cut(s) 924, 966, 1243
PstI CTGCAG 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 2 cut(s) 451, 709
RsaI GTAC 3 cut(s) 14, 683, 717
RsaNI GTAC 3 cut(s) 13, 682, 716
SapI GCTCTTC 1 cut(s) 286
SatI GCNGC 5 cut(s) 392, 567, 779, 1202, 1235
Sau3AI GATC 5 cut(s) 451, 508, 604, 709, 990
Sau96I GGNCC 3 cut(s) 924, 966, 1243
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 4 cut(s) 152, 731, 856, 1153
ScrFI CCNGG 4 cut(s) 439, 928, 970, 1241
SexAI ACCWGGT 1 cut(s) 968
SfaNI GCATC 2 cut(s) 102, 901
SfcI CTRYAG 1 cut(s) 530
SinI GGWCC 2 cut(s) 924, 966
Sse9I AATT 5 cut(s) 412, 467, 610, 938, 1033
SsiI CCGC 7 cut(s) 277, 285, 391, 566, 632, 956, 983
SspI AATATT 2 cut(s) 580, 1047
StyD4I CCNGG 4 cut(s) 437, 926, 968, 1239
TaaI ACNGT 4 cut(s) 138, 368, 880, 1004
TaqI TCGA 3 cut(s) 240, 507, 747
TasI AATT 5 cut(s) 412, 467, 610, 938, 1033
TatI WGTACW 2 cut(s) 12, 681
TauI GCSGC 2 cut(s) 394, 569
TfiI GAWTC 6 cut(s) 117, 242, 257, 811, 917, 1081
TscAI CASTG 4 cut(s) 890, 1000, 1142, 1186
TseI GCWGC 3 cut(s) 778, 1201, 1234
TspDTI ATGAA 6 cut(s) 27, 348, 436, 599, 717, 774
TspGWI ACGGA 4 cut(s) 238, 252, 332, 393
TspRI CASTG 4 cut(s) 890, 1000, 1142, 1186
VpaK11BI GGWCC 2 cut(s) 924, 966
XapI RAATTY 3 cut(s) 467, 938, 1033
XceI RCATGY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 1158
XmnI GAANNNNTTC 1 cut(s) 765
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.