Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026282.1

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1541

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026282.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgggaaatttgcatggatggggtggacctctcccgcaaagttggcttgatcaacagctgattctgcagaaaaaaattctcaacagaatgtatgaacttggaatgactccagtccttcctgcattttctgggaatgttcctgcagcactcaaaactatatatccatcagcaaagattacacagttaggaaactggttttctgttaagagtgaccctagatggacctgcacttaccttcttgatgcaactgatcccttatttgttgaaattgggaaaacattcattgaggaacaactaaaagaatatggaaggaccagtcacatttacaactgtgatacttttgatgagaatactccacctgttgatgatccggagtacatctctgcattaggtaaaacaatatttaagggactgcaaagtggagataaggacggtgtatggctaatgcagggatggttattttcatatgatccattctggaggcctgcacagatgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

NAGLU NAGLU_C NAGLU_N

Protein Analysis

166

Amino Acids

18.92

Weight (kDa)

5.33

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	245, 362, 464
AcsI	RAATTY	2 cut(s)	7, 75
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AlwI	GGATC	3 cut(s)	245, 362, 464
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	7, 75
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	3 cut(s)	26, 222, 312
AvaII	GGWCC	3 cut(s)	26, 222, 312
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	4 cut(s)	12, 172, 213, 447
BclI	TGATCA	1 cut(s)	49
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	65, 141
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme18I	GGWCC	3 cut(s)	26, 222, 312
BmgT120I	GGNCC	3 cut(s)	26, 222, 312
BmsI	GCATC	1 cut(s)	232
BoxI	GACNNNNGTC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	110, 197, 315
BseAI	TCCGGA	1 cut(s)	370
BseGI	GGATG	2 cut(s)	23, 458
BseNI	ACTGG	3 cut(s)	110, 197, 315
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	2 cut(s)	211, 471
BshFI	GGCC	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	484
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	49, 250, 367, 469
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	484
BspEI	TCCGGA	1 cut(s)	370
BspMAI	CTGCAG	2 cut(s)	69, 145
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	3 cut(s)	245, 362, 464
BsrI	ACTGG	3 cut(s)	110, 197, 315
BssMI	GATC	4 cut(s)	49, 250, 367, 469
Bst4CI	ACNGT	3 cut(s)	183, 332, 434
BstC8I	GCNNGC	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	23, 458
BstKTI	GATC	4 cut(s)	52, 253, 370, 472
BstMBI	GATC	4 cut(s)	49, 250, 367, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 64
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	65, 141
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	23, 458
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	486
Cfr13I	GGNCC	3 cut(s)	26, 222, 312
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	46, 58, 442, 484
CviKI_1	RGCY	4 cut(s)	46, 58, 442, 484
CviQI	GTAC	1 cut(s)	376
DpnI	GATC	4 cut(s)	51, 252, 369, 471
DpnII	GATC	4 cut(s)	49, 250, 367, 469
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	3 cut(s)	26, 222, 312
FaeI	CATG	1 cut(s)	17
FaiI	YATR	8 cut(s)	15, 93, 158, 160, 306, 439, 466, 468
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	30, 465
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	2 cut(s)	61, 106
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188III	TCNNGA	3 cut(s)	239, 371, 478
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	125, 245, 303
HpyCH4III	ACNGT	3 cut(s)	183, 332, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 64
Hsp92II	CATG	1 cut(s)	17
Kpn2I	TCCGGA	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	49, 250, 367, 469
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	209, 317
MalI	GATC	4 cut(s)	51, 252, 369, 471
MboI	GATC	4 cut(s)	49, 250, 367, 469
MluCI	AATT	3 cut(s)	7, 75, 267
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	39, 280, 474
MroI	TCCGGA	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	204, 405
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	43, 64
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	4 cut(s)	49, 250, 367, 469
NlaIII	CATG	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	209, 317
PceI	AGGCCT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	26, 222, 312
PstI	CTGCAG	2 cut(s)	69, 145
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	204, 405
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	4 cut(s)	49, 250, 367, 469
Sau96I	GGNCC	3 cut(s)	26, 222, 312
SchI	GAGTC	1 cut(s)	100
SetI	ASST	6 cut(s)	31, 60, 227, 237, 361, 394
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	2 cut(s)	65, 141
SinI	GGWCC	3 cut(s)	26, 222, 312
Sse9I	AATT	3 cut(s)	7, 75, 267
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	183, 332, 434
TasI	AATT	3 cut(s)	7, 75, 267
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	204, 405
Tru9I	TTAA	2 cut(s)	204, 405
TseFI	GTSAC	2 cut(s)	209, 317
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	209, 317
TspDTI	ATGAA	3 cut(s)	108, 271, 453
VpaK11BI	GGWCC	3 cut(s)	26, 222, 312
XapI	RAATTY	2 cut(s)	7, 75
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.