Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Reverse (-)

1613392 .. 1617976

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1018500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGATAGTTCTTGATCTATTTGCGGATGTCAAACCAATATGGAAAACATCATCTCAATTTTATGGCACTCCTTATATTTGGTGTCTCTTGCACAATTTTGGTGGAAACATTGAAATGTATGGCATATTGGATGCAATTTCTTCAGGTCCAGTTGACGCCCGAACTAGTGAAAATTCTACTATGGTTGGAGTTGGCATGTGCATGGAAGGTATTGAGCACAATCCAGTTGTTTATGAATTGACGTCTGAAATGGCATTTCGCAGTGAAAAGGTTCAAGTTCAGGATTGGCTAAAGATCTATTCCCGGAGACGCTATGGTAATGCAGTTCCTAAAGTTGAGGCAGCTTGGGACATCCTTCACCAGACAATTTACAACTGTACAGATGGGATTGCTGACCATAACACAGATTTCATAGTCAAACTCCCTGACTGGGATCCATCACCAAATCACATATCGAACATTTCAAAACAAAACCAGATGCAATCATTCATCCCGCTCGATAAAAAGAGAAGAGTTTTGCTCCAAAAAACCAGCTCTAATTTGCCTCAGGCACATTTGTGGTATTCTACTCAAGAGGTGGTCAATGCTTTACGACTATTCCTTGACACTGGAAATGAATTCTCTGGAAGCCTGACATATAGATATGACTTGGTTGATTTGACACGGCAAGTACTTTCAAAGCTAGCAAATCAAGTATATCTGGATGCAGTGACAGCTTACCGGAGGAGGGATGTAAAAGCTTATAGTCACCATAGTCAAAAGTTTGTTCAACTCATAATGGATATTGATGAACTGCTCGCTTCTGATGATAATTTTTTACTTGGAACCTGGCTTGAAAGTGCAAAAAATCTGGCAGCTAATCCTACGGAAATGCAGCAGTACGAGTGGAATGCAAGGACGCAGGTGACAATGTGGTTTGATAACACAAAAACCAACCAGAGCAGGCTTCATGATTACGCAAATAAGTTCTGGAGTGGGCTATTGAAAAGCTACTATCTACCTCGAGCTTCAACCTACTTTGGTCTTTTGTCAAAAAGCTTGAGAGACAACAAGGACTTCGAGTTGGAGGAATGGAGAAAAGAATGGATAGCGTATTCAAACAATTGGCAAGCAGGTACCGAACTTTACCGGGTGAAGGCAAAAGGAGATGCTCTTGCTATTTCTAAAGCATTGTATGAAAAATATTTCGTTCGAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

NAGLU NAGLU_C NAGLU_N

Protein Analysis

401

Amino Acids

46.39

Weight (kDa)

6.77

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAGLU	PF05089	1 - 87	1.4e-31	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
NAGLU_C	PF12972	96 - 394	7.7e-90	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
AatII	GACGTC	1 cut(s)	245
Acc36I	ACCTGC	2 cut(s)	892, 1103
Acc65I	GGTACC	1 cut(s)	1115
AccB1I	GGYRCC	1 cut(s)	1115
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	2 cut(s)	23, 494
AclWI	GGATC	2 cut(s)	428, 441
AcsI	RAATTY	2 cut(s)	172, 617
AcuI	CTGAAG	1 cut(s)	126
AcyI	GRCGYC	2 cut(s)	156, 242
AfaI	GTAC	4 cut(s)	379, 672, 881, 1117
AfiI	CCNNNNNNNGG	3 cut(s)	430, 727, 1135
AgsI	TTSAA	9 cut(s)	113, 275, 465, 678, 770, 836, 985, 1011, 1098
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	827
AleI	CACNNNNGTG	1 cut(s)	556
AluBI	AGCT	9 cut(s)	344, 534, 682, 716, 740, 857, 990, 1007, 1038
AluI	AGCT	9 cut(s)	344, 534, 682, 716, 740, 857, 990, 1007, 1038
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	89, 301, 1038
AlwI	GGATC	2 cut(s)	428, 441
Ama87I	CYCGRG	1 cut(s)	1002
ApeKI	GCWGC	3 cut(s)	341, 854, 874
ApoI	RAATTY	2 cut(s)	172, 617
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	1115
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	2 cut(s)	304, 1130
AsuHPI	GGTGA	5 cut(s)	350, 432, 740, 916, 1144
AsuNHI	GCTAGC	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	1115
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	353, 866, 886
BccI	CCATC	2 cut(s)	377, 445
BceAI	ACGGC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	1 cut(s)	829
BcnI	CCSGG	2 cut(s)	304, 1130
BcoDI	GTCTC	3 cut(s)	89, 301, 1038
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	165, 683
BfuAI	ACCTGC	2 cut(s)	892, 1103
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	3 cut(s)	342, 855, 875
BlsI	GCNGC	3 cut(s)	343, 856, 876
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	3 cut(s)	304, 829, 1130
Bme18I	GGWCC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	435, 826, 1117
BmrFI	CCNGG	3 cut(s)	304, 829, 1130
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	4 cut(s)	121, 468, 694, 1138
BmtI	GCTAGC	1 cut(s)	686
BmuI	ACTGGG	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
BpmI	CTGGAG	1 cut(s)	991
BpuEI	CTTGAG	2 cut(s)	555, 1060
BpuMI	CCSGG	2 cut(s)	304, 1130
BsaHI	GRCGYC	2 cut(s)	156, 242
BsaWI	WCCGGW	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 727, 1135
Bse1I	ACTGG	4 cut(s)	149, 224, 434, 613
Bse21I	CCTNAGG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	829
BseGI	GGATG	6 cut(s)	31, 136, 351, 489, 709, 736
BseLI	CCNNNNNNNGG	3 cut(s)	430, 727, 1135
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	4 cut(s)	149, 224, 434, 613
BseRI	GAGGAG	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	353, 866, 886
BshNI	GGYRCC	1 cut(s)	1115
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	3 cut(s)	304, 721, 1129
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	430, 727, 1135
BsmAI	GTCTC	3 cut(s)	89, 301, 1038
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	895
BsoBI	CYCGRG	1 cut(s)	1002
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	13, 294, 433
BspACI	CCGC	2 cut(s)	23, 494
BspCNI	CTCAG	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	3 cut(s)	435, 826, 1117
BspMI	ACCTGC	2 cut(s)	892, 1103
BspOI	GCTAGC	1 cut(s)	686
BspPI	GGATC	2 cut(s)	428, 441
BspT107I	GGYRCC	1 cut(s)	1115
BsrBI	CCGCTC	1 cut(s)	496
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	4 cut(s)	149, 224, 434, 613
BssMI	GATC	3 cut(s)	13, 294, 433
BssNI	GRCGYC	2 cut(s)	156, 242
Bst2UI	CCWGG	1 cut(s)	829
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	505
BstACI	GRCGYC	2 cut(s)	156, 242
BstAUI	TGTACA	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	684, 798, 944, 1110
BstDEI	CTNAG	1 cut(s)	546
BstF5I	GGATG	6 cut(s)	31, 136, 351, 489, 709, 736
BstKTI	GATC	3 cut(s)	16, 297, 436
BstMAI	GTCTC	3 cut(s)	89, 301, 1038
BstMBI	GATC	3 cut(s)	13, 294, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	1 cut(s)	829
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	3 cut(s)	302, 827, 1128
BstV1I	GCAGC	3 cut(s)	353, 866, 886
BstX2I	RGATCY	2 cut(s)	294, 433
BstYI	RGATCY	2 cut(s)	294, 433
Bsu36I	CCTNAGG	1 cut(s)	546
BtsCI	GGATG	6 cut(s)	31, 136, 351, 489, 709, 736
BtsI	GCAGTG	2 cut(s)	268, 714
BtsIMutI	CAGTG	3 cut(s)	268, 606, 714
BveI	ACCTGC	2 cut(s)	892, 1103
Cac8I	GCNNGC	4 cut(s)	684, 798, 944, 1110
CciI	TCATGA	1 cut(s)	949
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	3 cut(s)	164, 318, 907
Csp6I	GTAC	4 cut(s)	378, 671, 880, 1116
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	3 cut(s)	196, 202, 950
CviQI	GTAC	4 cut(s)	378, 671, 880, 1116
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	3 cut(s)	15, 296, 435
DpnII	GATC	3 cut(s)	13, 294, 433
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	1002
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	827
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	3 cut(s)	199, 205, 953
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	195, 201, 949
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	342, 855, 875
FokI	GGATG	6 cut(s)	38, 143, 338, 476, 716, 743
Fsp4HI	GCNGC	3 cut(s)	342, 855, 875
FspBI	CTAG	2 cut(s)	165, 683
GluI	GCNGC	3 cut(s)	342, 855, 875
GsuI	CTGGAG	1 cut(s)	991
HapII	CCGG	3 cut(s)	304, 721, 1129
HgaI	GACGC	3 cut(s)	164, 318, 907
Hin1I	GRCGYC	2 cut(s)	156, 242
Hin1II	CATG	3 cut(s)	199, 205, 953
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	2 cut(s)	738, 1036
HpaII	CCGG	3 cut(s)	304, 721, 1129
HphI	GGTGA	5 cut(s)	350, 432, 740, 916, 1144
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	247, 805
Hpy188III	TCNNGA	7 cut(s)	11, 281, 572, 624, 701, 950, 970
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	200, 365, 1129
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	9 cut(s)	91, 134, 201, 323, 481, 707, 842, 874, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	2 cut(s)	156, 242
Hsp92II	CATG	3 cut(s)	199, 205, 953
KpnI	GGTACC	1 cut(s)	1119
Kzo9I	GATC	3 cut(s)	13, 294, 433
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	3 cut(s)	353, 866, 886
LweI	GCATC	4 cut(s)	121, 468, 694, 1138
MaeI	CTAG	2 cut(s)	165, 683
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	709, 746, 904
MalI	GATC	3 cut(s)	15, 296, 435
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	3 cut(s)	13, 294, 433
MboII	GAAGA	2 cut(s)	132, 522
MfeI	CAATTG	1 cut(s)	1102
MflI	RGATCY	2 cut(s)	294, 433
MhlI	GDGCHC	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	166, 1044
MnlI	CCTC	7 cut(s)	331, 555, 568, 717, 720, 1011, 1060
MroXI	GAANNNNTTC	1 cut(s)	270
MslI	CAYNNNNRTG	3 cut(s)	113, 200, 556
MspI	CCGG	3 cut(s)	304, 721, 1129
MspR9I	CCNGG	3 cut(s)	304, 829, 1130
MunI	CAATTG	1 cut(s)	1102
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	829
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	2 cut(s)	304, 1130
NdeII	GATC	3 cut(s)	13, 294, 433
NheI	GCTAGC	1 cut(s)	682
NlaIII	CATG	3 cut(s)	199, 205, 953
NlaIV	GGNNCC	3 cut(s)	435, 826, 1117
NmuCI	GTSAC	3 cut(s)	709, 746, 904
NspI	RCATGY	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	1002
PagI	TCATGA	1 cut(s)	949
PaqCI	CACCTGC	1 cut(s)	892
PctI	GAATGC	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	343, 856, 876
Psp6I	CCWGG	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	827
PspN4I	GGNNCC	3 cut(s)	435, 826, 1117
PspPI	GGNCC	1 cut(s)	146
PspXI	VCTCGAGB	1 cut(s)	1002
PsuI	RGATCY	2 cut(s)	294, 433
RsaI	GTAC	4 cut(s)	379, 672, 881, 1117
RsaNI	GTAC	4 cut(s)	378, 671, 880, 1116
RseI	CAYNNNNRTG	3 cut(s)	113, 200, 556
SatI	GCNGC	3 cut(s)	342, 855, 875
Sau3AI	GATC	3 cut(s)	13, 294, 433
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	672
ScrFI	CCNGG	3 cut(s)	304, 829, 1130
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	121, 468, 694, 1138
Sfr274I	CTCGAG	1 cut(s)	1002
SinI	GGWCC	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	3 cut(s)	113, 200, 556
SmlI	CTYRAG	3 cut(s)	570, 1002, 1039
SmoI	CTYRAG	3 cut(s)	570, 1002, 1039
SpeI	ACTAGT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	23, 494
SspI	AATATT	1 cut(s)	1184
SspMI	CTAG	2 cut(s)	165, 683
StyD4I	CCNGG	3 cut(s)	302, 827, 1128
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	5 cut(s)	455, 498, 1003, 1059, 1192
TatI	WGTACW	2 cut(s)	377, 670
TscAI	CASTG	3 cut(s)	268, 613, 714
TseFI	GTSAC	3 cut(s)	709, 746, 904
TseI	GCWGC	3 cut(s)	341, 854, 874
Tsp45I	GTSAC	3 cut(s)	709, 746, 904
TspDTI	ATGAA	7 cut(s)	249, 400, 478, 630, 804, 938, 1191
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	3 cut(s)	268, 613, 714
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	172, 617
XceI	RCATGY	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	1002
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	165, 683
ZraI	GACGTC	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.