Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Reverse (-)

1626173 .. 1628742

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1018700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCGAATTTCAAAATCCAGCTGCTGATTTTGATTGCTGTTTTTATTGTACCAATCCTAGCTGTATCAGCAAAAGCAGAAGCAGTTACGGCGTTGCTCCGCCGTCTGGACTCCAAACGGTCGTCGGCTTCGGTTCAAGAAGCTGCAGCTAAAGCTGTTCTCGAAAGATTGCTTCCTACCCATGTTCACAGTTTCGACTTCAAGATTGTCTCCCAAGATGCTTGTGGTGGACACAGTTGCTTTATGCTAAACAATTACAACCTGTCAAGCGGACATGGTCCTGAGATACAGGTTAAAGGCACCACAGCAGTTGAAATTGCATCTGGCCTCCACTGGTATTTGAAGTACTGGTGTGGGGCTCATGTTTCTTGGGACAAGACTGGTGGTGCTCAGCTAGCTTCCATCCCAAGTCCAGGATCACTGCCTCGTGTAAGAGATGAAGGGTTAAGGATACAACGACCAGTCCCGTGGAACTATTATCAAAATGTTGTTACATCTAGCTATTCATTTGTTTGGTGGGATTGGGAGAGATGGCAGAAAGAAATAGACTGGATGGCTCTTCAGGGGATTAACCTGCCTTTAGCATTCACAGGGCAAGAATCAATTTGGCAGAAAGTCTTCATGGTAAATTATAAAAGCTCTTACATATATGAAGGTGTTCATCAAATTCTAAGCTTCTACATTATATGTCTTGCATATGTTGCTGCTTTTAACATAGAGTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

NAGLU NAGLU_C NAGLU_N

Protein Analysis

243

Amino Acids

27.34

Weight (kDa)

8.29

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAGLU_N	PF12971	48 - 142	6.4e-25	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
NAGLU	PF05089	159 - 209	1.9e-23	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	2 cut(s)	100, 270
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	7, 666
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	2 cut(s)	51, 347
AfiI	CCNNNNNNNGG	2 cut(s)	106, 413
AgsI	TTSAA	5 cut(s)	13, 137, 202, 314, 343
AjnI	CCWGG	1 cut(s)	412
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	4 cut(s)	22, 143, 146, 704
ApoI	RAATTY	2 cut(s)	7, 666
Asp700I	GAANNNNTTC	2 cut(s)	617, 657
AspS9I	GGNCC	1 cut(s)	278
AsuNHI	GCTAGC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	610
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	4 cut(s)	9, 130, 158, 691
BccI	CCATC	3 cut(s)	410, 525, 547
BceAI	ACGGC	2 cut(s)	87, 105
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	59, 395, 498
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	4 cut(s)	23, 144, 147, 705
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	4 cut(s)	24, 145, 148, 706
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	208, 329
BmtI	GCTAGC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	610
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 413
Bse1I	ACTGG	5 cut(s)	338, 353, 385, 461, 554
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	402, 558
BseLI	CCNNNNNNNGG	2 cut(s)	106, 413
BseMII	CTCAG	2 cut(s)	273, 404
BseNI	ACTGG	5 cut(s)	338, 353, 385, 461, 554
BseXI	GCAGC	4 cut(s)	9, 130, 158, 691
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	391
BslFI	GGGAC	2 cut(s)	386, 449
BslI	CCNNNNNNNGG	2 cut(s)	106, 413
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	386, 449
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	361, 391
Bsp143I	GATC	1 cut(s)	416
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	2 cut(s)	100, 270
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	274, 403
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	582
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	299
BsrI	ACTGG	5 cut(s)	338, 353, 385, 461, 554
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	1 cut(s)	416
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	120, 191, 236
Bst6I	CTCTTC	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	282, 390, 671
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	402, 558
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	416
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 89, 152, 395, 701
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	9, 130, 158, 691
BstV2I	GAAGAC	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	467
BtsCI	GGATG	2 cut(s)	402, 558
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	331, 419
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	50, 346
CspCI	CAANNNNNGTGG	4 cut(s)	292, 327, 364, 399
CviAII	CATG	4 cut(s)	182, 275, 362, 622
CviQI	GTAC	2 cut(s)	50, 346
DdeI	CTNAG	3 cut(s)	282, 390, 671
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	361
FaeI	CATG	4 cut(s)	185, 278, 365, 625
FaqI	GGGAC	2 cut(s)	386, 449
FatI	CATG	4 cut(s)	181, 274, 361, 621
FauNDI	CATATG	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	23, 144, 147, 705
FokI	GGATG	2 cut(s)	389, 565
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	4 cut(s)	23, 144, 147, 705
FspBI	CTAG	3 cut(s)	59, 395, 498
GluI	GCNGC	4 cut(s)	23, 144, 147, 705
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	185, 278, 365, 625
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	2 cut(s)	110, 599
Hpy166II	GTNNAC	2 cut(s)	187, 230
Hpy188III	TCNNGA	5 cut(s)	107, 137, 161, 202, 281
Hpy8I	GTNNAC	2 cut(s)	187, 230
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	434, 647
HpyCH4III	ACNGT	3 cut(s)	120, 191, 236
HpyCH4V	TGCA	4 cut(s)	146, 320, 695, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 89, 152, 395, 701
HpyF3I	CTNAG	3 cut(s)	282, 390, 671
Hsp92II	CATG	4 cut(s)	185, 278, 365, 625
Kzo9I	GATC	1 cut(s)	416
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	102
Lsp1109I	GCAGC	4 cut(s)	9, 130, 158, 691
LweI	GCATC	2 cut(s)	208, 329
MaeI	CTAG	3 cut(s)	59, 395, 498
MaeIII	GTNAC	2 cut(s)	85, 490
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	2 cut(s)	551, 610
MhlI	GDGCHC	2 cut(s)	361, 391
MluCI	AATT	6 cut(s)	7, 253, 315, 603, 628, 666
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	338, 435
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	2 cut(s)	617, 657
MseI	TTAA	4 cut(s)	294, 446, 570, 711
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	5 cut(s)	68, 89, 152, 395, 701
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	1 cut(s)	416
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	4 cut(s)	185, 278, 365, 625
NlaIV	GGNNCC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	564
PctI	GAATGC	1 cut(s)	584
PdmI	GAANNNNTTC	2 cut(s)	617, 657
PfeI	GAWTC	1 cut(s)	599
PflFI	GACNNNGTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	24, 145, 148, 706
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	51, 347
RsaNI	GTAC	2 cut(s)	50, 346
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	4 cut(s)	294, 446, 570, 711
SatI	GCNGC	4 cut(s)	23, 144, 147, 705
Sau3AI	GATC	1 cut(s)	416
Sau96I	GGNCC	1 cut(s)	278
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	361, 391
SfaNI	GCATC	2 cut(s)	208, 329
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	6 cut(s)	7, 253, 315, 603, 628, 666
SsiI	CCGC	2 cut(s)	100, 270
SspMI	CTAG	3 cut(s)	59, 395, 498
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	120, 191, 236
TaqI	TCGA	3 cut(s)	5, 162, 195
TasI	AATT	6 cut(s)	7, 253, 315, 603, 628, 666
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	4 cut(s)	294, 446, 570, 711
Tru9I	TTAA	4 cut(s)	294, 446, 570, 711
TscAI	CASTG	2 cut(s)	338, 426
TseI	GCWGC	4 cut(s)	22, 143, 146, 704
TspDTI	ATGAA	5 cut(s)	453, 495, 610, 650, 666
TspRI	CASTG	2 cut(s)	338, 426
Tth111I	GACNNNGTC	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	7, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmnI	GAANNNNTTC	2 cut(s)	617, 657
XspI	CTAG	3 cut(s)	59, 395, 498
ZrmI	AGTACT	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.