RLG00000017711

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000933
Physical Location & Seq
Reverse (-)
20300373 .. 20307245
6873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017711

Sequence Viewer

Length: 954 bp
ATGACAACTGACCTCAAGATCTCTTTGATTTCGTCAGCGGCAAACGCTTTCAAGTCATGGAAAAGGCTTGATGTTTATAGTTTCGATGAGAATACTCCACTTGTTGATGATCCAGAGTACATCTCTGCATTGGGTGAAACAATATTCAAGGGACTGCAAAGCGGAGATAAGGATGGGGTCTGGCTAATGCAGCCTGGACCAGCTATCGTAGCATTTGATTTGGCAAAGGAGGAGGTTCGGACAATGCCGCTGCCAATTCTTGAAGGATGCATGTGTTTCTCCCACCTGGGGGTTTCTTTTGAAGGATGCCTGCATGTGACGAGTCAGATGCCGTTTGCTTATGAGTGTATTGGTTTGTGGGTAATGAGAGAATATGGCGTGCCTGGCTCCTGGATAAAGCTATTTAACATAAATTTTGAATCGCTTGAGCGGATAATTTTTAGCACAGCAATAGTGGTAATGGAGAAGAGTGTAGTTTTGGGTCTATGGAGAGGGAATGACCATGACAAGAACATAATGATTAAGGTTGATCATGGAAATGGGAGTGGGGAAAAGAACTTGATGATTAAGGTTGATCATGGTAATGAGAGTCTTGGTGATCGAGTATACGCTGCCAGCTGGTTTAGGCAGCATTCATATGCATGGTATGCAAGGGCACTTATACGAATTGGAGTGGAAACTCCTCATGGGTCTGCAGTTGAGGCTCAGGGGGTTGGGCTACACGAGACGCTACACTGGGTGTGTTTCGGCTGTAATCGTGTTCCATACATCAGTGCTTTGGAACTGAGAAATGAGGAGTTTCGGACAATGCAGCTTCCTATGGCTTCCATTGGAAAAGACGAGAGTCTGGCGCTGTTTTCATGGAGAGGATGCCTGTGTGCATATATGGCAGTATGGGACTCTGTCTGTGCAGACAGTGCAGTGTTGGGTGATGGAAACCTATGGAGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

318

Amino Acids

35.38

Weight (kDa)

5.2

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 606
AciI CCGC 4 cut(s) 38, 162, 248, 430
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 412
AdeI CACNNNGTG 1 cut(s) 739
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 288, 289
AgsI TTSAA 5 cut(s) 52, 148, 263, 302, 419
AjnI CCWGG 4 cut(s) 193, 285, 382, 389
AluBI AGCT 4 cut(s) 203, 400, 618, 814
AluI AGCT 4 cut(s) 203, 400, 618, 814
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 5 cut(s) 190, 250, 611, 628, 811
ApoI RAATTY 1 cut(s) 412
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 3 cut(s) 146, 608, 941
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 658
BauI CACGAG 1 cut(s) 722
BbvI GCAGC 5 cut(s) 202, 237, 598, 640, 823
BccI CCATC 2 cut(s) 167, 926
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 4 cut(s) 195, 287, 384, 391
BclI TGATCA 2 cut(s) 529, 574
BcoDI GTCTC 1 cut(s) 719
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 1 cut(s) 854
BglII AGATCT 1 cut(s) 18
BisI GCNGC 7 cut(s) 39, 191, 248, 251, 612, 629, 812
BlsI GCNGC 7 cut(s) 40, 192, 249, 252, 613, 630, 813
Bme1390I CCNGG 4 cut(s) 195, 287, 384, 391
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 4 cut(s) 195, 287, 384, 391
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 4 cut(s) 257, 296, 318, 860
BmuI ACTGGG 1 cut(s) 745
BoxI GACNNNNGTC 1 cut(s) 843
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 289
Bse1I ACTGG 1 cut(s) 740
BseBI CCWGG 4 cut(s) 195, 287, 384, 391
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 4 cut(s) 178, 272, 311, 875
BseLI CCNNNNNNNGG 2 cut(s) 288, 289
BseMII CTCAG 2 cut(s) 719, 776
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 3 cut(s) 245, 672, 809
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 5 cut(s) 202, 237, 598, 640, 823
BsgI GTGCAG 2 cut(s) 930, 939
BslFI GGGAC 2 cut(s) 165, 911
BslI CCNNNNNNNGG 2 cut(s) 288, 289
BsmAI GTCTC 1 cut(s) 719
BsmBI CGTCTC 1 cut(s) 719
BsmFI GGGAC 2 cut(s) 165, 911
BsmI GAATGC 1 cut(s) 631
Bsp1286I GDGCHC 1 cut(s) 658
Bsp143I GATC 5 cut(s) 18, 109, 529, 574, 598
BspACI CCGC 4 cut(s) 38, 162, 248, 430
BspCNI CTCAG 2 cut(s) 718, 777
BspLI GGNNCC 1 cut(s) 388
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 430
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 5 cut(s) 18, 109, 529, 574, 598
BssNAI GTATAC 1 cut(s) 607
BssSI CACGAG 1 cut(s) 722
Bst1107I GTATAC 1 cut(s) 607
Bst2BI CACGAG 1 cut(s) 722
Bst2UI CCWGG 4 cut(s) 195, 287, 384, 391
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 1 cut(s) 461
BstAPI GCANNNNNTGC 2 cut(s) 647, 917
BstC8I GCNNGC 3 cut(s) 311, 380, 616
BstDEI CTNAG 2 cut(s) 705, 785
BstF5I GGATG 4 cut(s) 178, 272, 311, 875
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 5 cut(s) 21, 112, 532, 577, 601
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 5 cut(s) 18, 109, 529, 574, 598
BstMWI GCNNNNNNNGC 8 cut(s) 44, 190, 209, 384, 647, 701, 887, 917
BstNI CCWGG 4 cut(s) 195, 287, 384, 391
BstNSI RCATGY 2 cut(s) 274, 317
BstPAI GACNNNNGTC 1 cut(s) 843
BstSCI CCNGG 4 cut(s) 193, 285, 382, 389
BstSFI CTRYAG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 5 cut(s) 202, 237, 598, 640, 823
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BstZ17I GTATAC 1 cut(s) 607
BtsCI GGATG 4 cut(s) 178, 272, 311, 875
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 4 cut(s) 733, 778, 922, 927
Cac8I GCNNGC 3 cut(s) 311, 380, 616
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 736
Csp6I GTAC 1 cut(s) 118
CviAII CATG 9 cut(s) 57, 271, 314, 503, 533, 578, 642, 686, 861
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 705, 785
DpnI GATC 5 cut(s) 20, 111, 531, 576, 600
DpnII GATC 5 cut(s) 18, 109, 529, 574, 598
DraIII CACNNNGTG 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 4 cut(s) 193, 285, 382, 389
EcoT22I ATGCAT 2 cut(s) 272, 643
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 9 cut(s) 60, 274, 317, 506, 536, 581, 645, 689, 864
FaqI GGGAC 2 cut(s) 165, 911
FatI CATG 9 cut(s) 56, 270, 313, 502, 532, 577, 641, 685, 860
FauNDI CATATG 1 cut(s) 637
FbaI TGATCA 2 cut(s) 529, 574
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 7 cut(s) 39, 191, 248, 251, 612, 629, 812
FokI GGATG 4 cut(s) 185, 279, 318, 882
Fsp4HI GCNGC 7 cut(s) 39, 191, 248, 251, 612, 629, 812
GlaI GCGC 1 cut(s) 852
GluI GCNGC 7 cut(s) 39, 191, 248, 251, 612, 629, 812
HaeII RGCGCY 1 cut(s) 854
HgaI GACGC 1 cut(s) 736
HhaI GCGC 1 cut(s) 853
Hin1II CATG 9 cut(s) 60, 274, 317, 506, 536, 581, 645, 689, 864
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HinfI GANTC 5 cut(s) 322, 419, 589, 844, 899
HphI GGTGA 3 cut(s) 146, 608, 941
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 3 cut(s) 240, 327, 804
Hpy188III TCNNGA 3 cut(s) 16, 113, 260
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 2 cut(s) 257, 296
HpyCH4III ACNGT 1 cut(s) 917
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 190, 209, 384, 647, 701, 887, 917
HpyF3I CTNAG 2 cut(s) 705, 785
Hsp92II CATG 9 cut(s) 60, 274, 317, 506, 536, 581, 645, 689, 864
HspAI GCGC 1 cut(s) 851
Ksp22I TGATCA 2 cut(s) 529, 574
Kzo9I GATC 5 cut(s) 18, 109, 529, 574, 598
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 5 cut(s) 202, 237, 598, 640, 823
LweI GCATC 4 cut(s) 257, 296, 318, 860
MaeIII GTNAC 1 cut(s) 316
MalI GATC 5 cut(s) 20, 111, 531, 576, 600
MbiI CCGCTC 1 cut(s) 430
MboI GATC 5 cut(s) 18, 109, 529, 574, 598
MboII GAAGA 1 cut(s) 478
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 4 cut(s) 255, 412, 435, 666
MlyI GAGTC 4 cut(s) 331, 598, 853, 893
MnlI CCTC 8 cut(s) 23, 223, 226, 485, 693, 694, 787, 860
Mph1103I ATGCAT 2 cut(s) 272, 643
MseI TTAA 3 cut(s) 405, 522, 567
MslI CAYNNNNRTG 4 cut(s) 537, 582, 636, 640
MspA1I CMGCKG 3 cut(s) 38, 250, 618
MspR9I CCNGG 4 cut(s) 195, 287, 384, 391
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 4 cut(s) 195, 287, 384, 391
MwoI GCNNNNNNNGC 8 cut(s) 44, 190, 209, 384, 647, 701, 887, 917
NdeI CATATG 1 cut(s) 637
NdeII GATC 5 cut(s) 18, 109, 529, 574, 598
NlaIII CATG 9 cut(s) 60, 274, 317, 506, 536, 581, 645, 689, 864
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 2 cut(s) 272, 643
NspI RCATGY 2 cut(s) 274, 317
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 389
PkrI GCNGC 7 cut(s) 40, 192, 249, 252, 613, 630, 813
PleI GAGTC 4 cut(s) 330, 597, 852, 893
PpsI GAGTC 4 cut(s) 330, 597, 852, 893
PshAI GACNNNNGTC 1 cut(s) 843
Psp6I CCWGG 4 cut(s) 193, 285, 382, 389
PspGI CCWGG 4 cut(s) 193, 285, 382, 389
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 618
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 4 cut(s) 537, 582, 636, 640
SaqAI TTAA 3 cut(s) 405, 522, 567
SatI GCNGC 7 cut(s) 39, 191, 248, 251, 612, 629, 812
Sau3AI GATC 5 cut(s) 18, 109, 529, 574, 598
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 4 cut(s) 331, 598, 853, 893
ScrFI CCNGG 4 cut(s) 195, 287, 384, 391
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 4 cut(s) 257, 296, 318, 860
SfcI CTRYAG 1 cut(s) 693
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 4 cut(s) 537, 582, 636, 640
SmlI CTYRAG 2 cut(s) 14, 425
SmoI CTYRAG 2 cut(s) 14, 425
Sse9I AATT 4 cut(s) 255, 412, 435, 666
SsiI CCGC 4 cut(s) 38, 162, 248, 430
SspI AATATT 1 cut(s) 144
StyD4I CCNGG 4 cut(s) 193, 285, 382, 389
TaaI ACNGT 1 cut(s) 917
TaqI TCGA 2 cut(s) 84, 601
TasI AATT 4 cut(s) 255, 412, 435, 666
TatI WGTACW 1 cut(s) 117
TauI GCSGC 2 cut(s) 41, 250
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 3 cut(s) 405, 522, 567
Tru9I TTAA 3 cut(s) 405, 522, 567
TscAI CASTG 4 cut(s) 740, 778, 922, 927
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 5 cut(s) 190, 250, 611, 628, 811
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 624, 849
TspRI CASTG 4 cut(s) 740, 778, 922, 927
Tth111I GACNNNGTC 1 cut(s) 902
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 412
XceI RCATGY 2 cut(s) 274, 317
XmiI GTMKAC 1 cut(s) 606
Zsp2I ATGCAT 2 cut(s) 272, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.