Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Forward (+)

2802212 .. 2806038

Gene Structure 3827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0015800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCATTCCCTGGCTCGACGTTCCACCCAGGATCAACGCCTGGAACACAAGAAATCAATACGGCTGACACTCCATCTGCAGAACATCGGAGAAGTGCCGACTTTAACCCTGACGACCATATTATCCCATGGGTTGGTTTGCCTTCCTTTGACCGCGAACCCCACTCAGATGAAATGAAACAATCATGCAATCGTCTGTATAAAGCTGCGGTAAAAGGTAATTGGATAATGGCAAAACAAATCATAGACGAAGATGAAACCAACAGCATATTAGGTCTGAATATTACATATGGAAAGTACACCACACTTCATGTTGCAGCCGGAGCGCCACATGTTCACTTTGTGAATCAATTGCTGGAAATGATGGCCACGCGGCCGGAATACCGAAAATATCTCTTGCGACTAAAAGATGGAAGAGGTAATACTGCCTTCTGTTTAGCTGCGGCTGCTGGATCTATAGAAATTATTAAAACTATGATGGCACATGATCCAAGCCTGCAAGGAAGATTGGGTGGGGAAGGAAAGACGCCACTCTACATGGCTACTTTGTTTGGACATGAGCAAATGGCCTCGTACCTGTATGGGCTGTATGTTGAACCGTTACCTCGAGGCGAAGATCTGCTTGGAGTATTTTTCAGTTGCATAAATACTGGTCTCTATGGTCTAGCCGCTGAAGTGTTGAGACAACATCCCAGTTTTGCTTTAAAACGCGATGCTGAACATTCAAAGACAGCTTTACATTTGCTTGCTGAAAAGCCTTCAGCGTTCACCTGTAGACCTTCTTCAGAGATATGTATGAGGCTCGAACGATGTGAGTGTCACTTCTCAGGAACTCTATCAATTATCAACAATATCATCACTCCAAACCAATTCAAATATGTTGATGTCCGAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

NAGLU NAGLU_C NAGLU_N

Protein Analysis

299

Amino Acids

33.25

Weight (kDa)

6.49

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	135 - 194	2.1e-07	Ankyrin repeats (3 copies)
Ank_4	PF13637	147 - 193	9e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	775
AccII	CGCG	3 cut(s)	156, 373, 711
AciI	CCGC	5 cut(s)	154, 209, 373, 443, 669
AclWI	GGATC	3 cut(s)	40, 460, 482
AcoI	YGGCCR	2 cut(s)	366, 374
AcuI	CTGAAG	3 cut(s)	693, 744, 768
AcyI	GRCGYC	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	299, 575
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	596, 726, 874
AjnI	CCWGG	3 cut(s)	10, 28, 40
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	3 cut(s)	206, 440, 734
AluI	AGCT	3 cut(s)	206, 440, 734
Alw26I	GTCTC	2 cut(s)	659, 676
AlwI	GGATC	3 cut(s)	40, 460, 482
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	366, 374, 567
ApeKI	GCWGC	4 cut(s)	206, 317, 440, 446
AspLEI	GCGC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	368
BarI	GAAGNNNNNNTAC	4 cut(s)	406, 438, 766, 798
BbvI	GCAGC	4 cut(s)	193, 329, 427, 433
BccI	CCATC	4 cut(s)	82, 358, 404, 472
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	3 cut(s)	12, 30, 42
BcoDI	GTCTC	2 cut(s)	659, 676
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	3 cut(s)	78, 456, 772
BfoI	RGCGCY	1 cut(s)	329
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	7 cut(s)	207, 318, 374, 441, 444, 447, 669
BlsI	GCNGC	7 cut(s)	208, 319, 375, 442, 445, 448, 670
Bme1390I	CCNGG	3 cut(s)	12, 30, 42
BmeT110I	CYCGRG	1 cut(s)	606
BmrFI	CCNGG	3 cut(s)	12, 30, 42
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	703
BmuI	ACTGGG	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	3 cut(s)	10, 28, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	655, 693
BseBI	CCWGG	3 cut(s)	12, 30, 42
BseDI	CCNNGG	3 cut(s)	10, 28, 128
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	180, 840
BseNI	ACTGG	2 cut(s)	655, 693
BseX3I	CGGCCG	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	193, 329, 427, 433
Bsh1236I	CGCG	3 cut(s)	156, 373, 711
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	368, 376, 569
BsiEI	CGRYCG	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	321, 377
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	659, 676
BsnI	GGCC	3 cut(s)	368, 376, 569
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	32, 452, 487, 616
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	5 cut(s)	154, 209, 373, 443, 669
BspANI	GGCC	3 cut(s)	368, 376, 569
BspCNI	CTCAG	2 cut(s)	179, 839
BspFNI	CGCG	3 cut(s)	156, 373, 711
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	3 cut(s)	40, 460, 482
BspTNI	GGTCTC	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	655, 693
BssECI	CCNNGG	3 cut(s)	10, 28, 128
BssMI	GATC	4 cut(s)	32, 452, 487, 616
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	3 cut(s)	12, 30, 42
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	497, 747
BstDEI	CTNAG	2 cut(s)	166, 826
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	3 cut(s)	156, 373, 711
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	35, 455, 490, 619
BstMAI	GTCTC	2 cut(s)	659, 676
BstMBI	GATC	4 cut(s)	32, 452, 487, 616
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 446
BstNI	CCWGG	3 cut(s)	12, 30, 42
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	3 cut(s)	10, 28, 40
BstSFI	CTRYAG	3 cut(s)	78, 456, 772
BstUI	CGCG	3 cut(s)	156, 373, 711
BstV1I	GCAGC	4 cut(s)	193, 329, 427, 433
BstX2I	RGATCY	2 cut(s)	452, 616
BstYI	RGATCY	2 cut(s)	452, 616
BstZI	CGGCCG	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	368, 376, 569
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	497, 747
CfoI	GCGC	1 cut(s)	328
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	298, 574
CviAII	CATG	7 cut(s)	129, 186, 311, 332, 485, 538, 557
CviQI	GTAC	2 cut(s)	298, 574
DdeI	CTNAG	2 cut(s)	166, 826
DpnI	GATC	4 cut(s)	34, 454, 489, 618
DpnII	GATC	4 cut(s)	32, 452, 487, 616
DraI	TTTAAA	1 cut(s)	705
DraIII	CACNNNGTG	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	366, 374
EagI	CGGCCG	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
EclXI	CGGCCG	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	659
Eco52I	CGGCCG	1 cut(s)	374
Eco57I	CTGAAG	3 cut(s)	693, 744, 768
Eco88I	CYCGRG	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	10, 28, 40
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	7 cut(s)	132, 189, 314, 335, 488, 541, 560
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	7 cut(s)	128, 185, 310, 331, 484, 537, 556
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	7 cut(s)	207, 318, 374, 441, 444, 447, 669
FokI	GGATG	1 cut(s)	675
Fsp4HI	GCNGC	7 cut(s)	207, 318, 374, 441, 444, 447, 669
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	7 cut(s)	207, 318, 374, 441, 444, 447, 669
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	368, 376, 569
HapII	CCGG	2 cut(s)	321, 377
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	7 cut(s)	132, 189, 314, 335, 488, 541, 560
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	2 cut(s)	321, 377
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	4 cut(s)	300, 337, 768, 776
Hpy188I	TCNGA	5 cut(s)	90, 169, 279, 787, 890
Hpy188III	TCNNGA	1 cut(s)	828
Hpy8I	GTNNAC	4 cut(s)	300, 337, 768, 776
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	153, 439, 512, 768, 789
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	5 cut(s)	80, 189, 317, 499, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 446
HpyF3I	CTNAG	2 cut(s)	166, 826
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	7 cut(s)	132, 189, 314, 335, 488, 541, 560
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	4 cut(s)	32, 452, 487, 616
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	4 cut(s)	193, 329, 427, 433
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	600, 818
MalI	GATC	4 cut(s)	34, 454, 489, 618
MboI	GATC	4 cut(s)	32, 452, 487, 616
MboII	GAAGA	5 cut(s)	263, 426, 516, 626, 774
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	2 cut(s)	452, 616
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	5 cut(s)	220, 350, 462, 840, 869
MluNI	TGGCCA	1 cut(s)	368
MnlI	CCTC	5 cut(s)	410, 580, 602, 615, 792
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	3 cut(s)	105, 468, 704
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	2 cut(s)	321, 377
MspR9I	CCNGG	3 cut(s)	12, 30, 42
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	3 cut(s)	12, 30, 42
MvnI	CGCG	3 cut(s)	156, 373, 711
MwoI	GCNNNNNNNGC	2 cut(s)	323, 446
NcoI	CCATGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	4 cut(s)	32, 452, 487, 616
NlaIII	CATG	7 cut(s)	132, 189, 314, 335, 488, 541, 560
NmuCI	GTSAC	1 cut(s)	818
NspI	RCATGY	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	606
PciI	ACATGT	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	7 cut(s)	208, 319, 375, 442, 445, 448, 670
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	10, 28, 40
PspGI	CCWGG	3 cut(s)	10, 28, 40
PspXI	VCTCGAGB	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	452, 616
RsaI	GTAC	2 cut(s)	299, 575
RsaNI	GTAC	2 cut(s)	298, 574
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	105, 468, 704
SatI	GCNGC	7 cut(s)	207, 318, 374, 441, 444, 447, 669
Sau3AI	GATC	4 cut(s)	32, 452, 487, 616
ScrFI	CCNGG	3 cut(s)	12, 30, 42
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	3 cut(s)	78, 456, 772
Sfr274I	CTCGAG	1 cut(s)	606
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	5 cut(s)	220, 350, 462, 840, 869
SsiI	CCGC	5 cut(s)	154, 209, 373, 443, 669
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	3 cut(s)	10, 28, 40
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	3 cut(s)	17, 607, 804
TasI	AATT	5 cut(s)	220, 350, 462, 840, 869
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	3 cut(s)	376, 446, 671
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	3 cut(s)	105, 468, 704
Tru9I	TTAA	3 cut(s)	105, 468, 704
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	4 cut(s)	206, 317, 440, 446
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	186, 191, 270, 299
Van91I	CCANNNNNTGG	1 cut(s)	134
XceI	RCATGY	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.