Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000933

Physical Location & Seq

Genomic Coordinates Forward (+)

1867006 .. 1870344

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCCCACCACATTTCCCGCCATTTCTACCATTACCATCTTCACGCTCTTCTTCTTCTTCACCTTGTGTGTCCTCTCCTCATCATCATCCACCATCGGAGTCGGCTACATATCGAGCGTTCTGGAACTTCAGGACCGCGAGAGGGCCTCTCCCTATGTCCAAGTCGCCGCCGCTCGCGGAGTACTCCGCCGCCTTCTTCCTTCCCAATCCTCCAGCTTCGACTTCCAAATCGTCTCTAAGGAGCAATGTGGTGGTGCTTCCTGCTTTATGATTAAGAACCATCCTTCTTTTCGTAGACGAGGGGATCCACAGATTCTGATTTCTGGAGTCACTGGAGTGGAGATTTTGGCTGGTCTGCATTGGTATTTGAAGAATTGGTGTGGCTCACATATATCTTGGGATAAAACTGGTGGTGCGCAACTATTTTCAGTCCCAAAAGCAGGGTTTCTATCTCGTGTAGGAGATGGTGGCATTTTAGTCCAGAGACCTGTTCCTTGGAACTATTACCAGAATGCTGTCACATCTAGCTATTCTTTGGCTTGGTGGGACTGGAATAGATGGGAAAAGGAGATTGATATGATGGCCCTCCAGGGTATCAATTTGCCACTAGCATTTACAGGTCAAGAGGCTATATGGCAGAAAGTTTTCCAGGTGTATGCTGCACAACTTTGCAGGAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

NAGLU NAGLU_C NAGLU_N

Protein Analysis

228

Amino Acids

25.55

Weight (kDa)

9.32

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAGLU_N	PF12971	57 - 142	6.8e-22	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
NAGLU	PF05089	169 - 220	6.8e-23	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13690 AT5G13690
fragaria_vesca	FvH4_1g18460 FvH4_1g19570 FvH4_1g19580 FvH4_5g16380 FvH4_5g16380 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470 FvH4_7g01470
malus_domestica	MD07G1018500.v1.1 MD07G1018700.v1.1 MD14G1187100.v1.1
prunus_persica	Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.2G020300_v2.0.a1 Prupe.5G179300_v2.0.a1 Prupe.5G179300_v2.0.a1
pyrus_communis	pycom07g01480 pycom14g15500
rosa_chinensis	RchiOBHm_Chr1g0317311 RchiOBHm_Chr7g0179731 RchiOBHm_Chr7g0179741
rosa_laevigata	RLG00000005326 RLG00000017711 RLG00000029569 RLG00000030607
rosa_multiflora	Rmu_sc0000186.1_g000002 Rmu_sc0004156.1_g000003 Rmu_sc0005092.1_g000001 Rmu_sc0013869.1_g000005 Rmu_sc0026282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273510 Rroxscaffold_4G00330500
rosa_rugosa	Rorug01G0015800 Rorug02G0157200 Rorug06G0427700
rosa_samantha	Rh1AG027200 Rh1AG093700 Rh1BG023100 Rh1CG025200 Rh1DG046000 Rh2AG208700 Rh4CG293700 Rh7AG027200 Rh7AG027300 Rh7BG026300 Rh7BG026400 Rh7CG028400 Rh7CG170000 Rh7DG028000
rosa_wichuraiana	Rw1G001880 Rw7G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	2 cut(s)	141, 180
AciI	CCGC	7 cut(s)	21, 139, 171, 174, 180, 190, 193
AclI	AACGTT	1 cut(s)	682
AclWI	GGATC	2 cut(s)	302, 315
AcuI	CTGAAG	1 cut(s)	116
AdeI	CACNNNGTG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	145, 443
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	591, 651
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	2 cut(s)	219, 531
AluI	AGCT	2 cut(s)	219, 531
Alw26I	GTCTC	2 cut(s)	241, 481
AlwI	GGATC	2 cut(s)	302, 315
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	2 cut(s)	147, 585
ApeKI	GCWGC	1 cut(s)	662
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	136, 147, 586
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	649
BccI	CCATC	6 cut(s)	47, 104, 291, 461, 555, 577
BciT130I	CCWGG	2 cut(s)	593, 653
BcoDI	GTCTC	2 cut(s)	241, 481
BfaI	CTAG	2 cut(s)	528, 611
BisI	GCNGC	4 cut(s)	171, 174, 193, 663
BlsI	GCNGC	4 cut(s)	172, 175, 194, 664
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	593, 653
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	136, 147, 586
BmiI	GGNNCC	2 cut(s)	6, 309
BmrFI	CCNGG	2 cut(s)	593, 653
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 136, 168
BpmI	CTGGAG	4 cut(s)	199, 348, 357, 575
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	497, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 443
Bse1I	ACTGG	3 cut(s)	340, 415, 557
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	593, 653
BseDI	CCNNGG	2 cut(s)	497, 592
BseGI	GGATG	2 cut(s)	89, 283
BseLI	CCNNNNNNNGG	2 cut(s)	145, 443
BseMI	GCAATG	1 cut(s)	254
BseNI	ACTGG	3 cut(s)	340, 415, 557
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	649
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	2 cut(s)	141, 180
BshFI	GGCC	2 cut(s)	149, 587
BslFI	GGGAC	2 cut(s)	419, 563
BslI	CCNNNNNNNGG	2 cut(s)	145, 443
BsmAI	GTCTC	2 cut(s)	241, 481
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	419, 563
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	149, 587
Bso31I	GGTCTC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	7 cut(s)	21, 139, 171, 174, 180, 190, 193
BspANI	GGCC	2 cut(s)	149, 587
BspFNI	CGCG	2 cut(s)	141, 180
BspLI	GGNNCC	2 cut(s)	6, 309
BspPI	GGATC	2 cut(s)	302, 315
BspQI	GCTCTTC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	340, 415, 557
BssECI	CCNNGG	2 cut(s)	497, 592
BssMI	GATC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	593, 653
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	89, 283
BstFNI	CGCG	2 cut(s)	141, 180
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	241, 481
BstMBI	GATC	1 cut(s)	307
BstNI	CCWGG	2 cut(s)	593, 653
BstSCI	CCNGG	2 cut(s)	591, 651
BstUI	CGCG	2 cut(s)	141, 180
BstV1I	GCAGC	1 cut(s)	649
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	149, 587
BtsCI	GGATG	2 cut(s)	89, 283
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	136, 147, 586
Csp6I	GTAC	1 cut(s)	185
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	591, 651
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
Esp3I	CGTCTC	1 cut(s)	241
FaiI	YATR	9 cut(s)	113, 159, 272, 393, 395, 581, 635, 637, 660
FaqI	GGGAC	2 cut(s)	419, 563
FauI	CCCGC	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	171, 174, 193, 663
FokI	GGATG	2 cut(s)	76, 270
Fsp4HI	GCNGC	4 cut(s)	171, 174, 193, 663
FspBI	CTAG	2 cut(s)	528, 611
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	171, 174, 193, 663
GsuI	CTGGAG	4 cut(s)	199, 348, 357, 575
HaeIII	GGCC	2 cut(s)	149, 587
HhaI	GCGC	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	3 cut(s)	102, 316, 330
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	101, 321
Hpy188III	TCNNGA	5 cut(s)	125, 134, 327, 484, 626
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	206, 213, 297
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	3 cut(s)	361, 665, 675
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	682
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	307
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	10, 244
Lsp1109I	GCAGC	1 cut(s)	649
MaeI	CTAG	2 cut(s)	528, 611
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	2 cut(s)	331, 520
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	1 cut(s)	307
MboII	GAAGA	7 cut(s)	34, 43, 46, 49, 52, 191, 385
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	2 cut(s)	376, 601
MlyI	GAGTC	2 cut(s)	111, 339
MnlI	CCTC	8 cut(s)	86, 91, 138, 160, 223, 296, 599, 622
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	593, 653
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	2 cut(s)	593, 653
MvnI	CGCG	2 cut(s)	141, 180
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	6, 309
NmuCI	GTSAC	2 cut(s)	331, 520
NsbI	TGCGCA	1 cut(s)	420
OliI	CACNNNNGTG	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	56
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	172, 175, 194, 664
PleI	GAGTC	2 cut(s)	110, 338
PpsI	GAGTC	2 cut(s)	110, 338
Psp1406I	AACGTT	1 cut(s)	682
Psp6I	CCWGG	2 cut(s)	591, 651
PspGI	CCWGG	2 cut(s)	591, 651
PspN4I	GGNNCC	2 cut(s)	6, 309
PspPI	GGNCC	3 cut(s)	136, 147, 586
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	4 cut(s)	171, 174, 193, 663
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	3 cut(s)	136, 147, 586
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	2 cut(s)	111, 339
ScrFI	CCNGG	2 cut(s)	593, 653
SetI	ASST	7 cut(s)	68, 221, 493, 533, 625, 657, 685
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	376, 601
SsiI	CCGC	7 cut(s)	21, 139, 171, 174, 180, 190, 193
SspMI	CTAG	2 cut(s)	528, 611
StyD4I	CCNGG	2 cut(s)	591, 651
StyI	CCWWGG	1 cut(s)	497
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	2 cut(s)	116, 222
TasI	AATT	2 cut(s)	376, 601
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	3 cut(s)	173, 176, 195
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	331, 520
TseI	GCWGC	1 cut(s)	662
Tsp45I	GTSAC	2 cut(s)	331, 520
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	528, 611
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.