Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

10230426 .. 10234282

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11680.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCACTTCTGGCCCCGACCTCCTCCCTTTCAAAAGACTCGTACTCTGTATCATCCACAATCCGTGGTTCTAAGCTCCAATCTCAGCACACCCGTTTCAGGTCATTCCGTGGTTCCAAAGAGTCCTTAGGCCTGACTCAACAACTGAAAAGCAACAAACTGGAGAGAGTAGTGGAAACTGAGGATGGGAGCGATTTGTTTGAAGATATGAAACATCGGTTTCTTAGCTTCAAAAGGCAGAAATATTTGGAAAACTTGGAACACTATCAAAATCTTGCCAAGGGTCAATCACCAAAGTTCTTGGTGATTGGTTGTGCAGACTCTAGGGTCTGTCCCTCAACAATTCTGGGATTCCAGCCAGGAGAAGCGTTTATGGTTCGCAACATTGCAAATTTGGTTCCACCCTTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTGGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCATAGCTGCTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAGTAGACAAAAGTAACTTTGTCCAAAGTTGGGTTGTCAATGCAAAGGATGCAAGGTTGTGGACAAAGATTGCTGCCTCCAATCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTTAACCGTTCGTTGTTAAATCTACTCACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTATCTATACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACTCTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAGTCTCAGTTAAAAATCATTTACTTTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

286

Amino Acids

32.25

Weight (kDa)

8.58

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	111 - 264	2.5e-42	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	391, 443, 454
AfaI	GTAC	2 cut(s)	44, 766
AfiI	CCNNNNNNNGG	2 cut(s)	99, 565
AgsI	TTSAA	5 cut(s)	33, 203, 232, 464, 808
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	5 cut(s)	76, 228, 495, 624, 855
AluI	AGCT	5 cut(s)	76, 228, 495, 624, 855
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	832
AoxI	GGCC	2 cut(s)	12, 130
ApeKI	GCWGC	3 cut(s)	434, 495, 608
ApoI	RAATTY	3 cut(s)	391, 443, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AspS9I	GGNCC	2 cut(s)	13, 416
AsuHPI	GGTGA	3 cut(s)	282, 316, 724
AvaII	GGWCC	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	3 cut(s)	421, 482, 595
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	832
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	3 cut(s)	435, 496, 609
BlsI	GCNGC	3 cut(s)	436, 497, 610
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	13, 416
BmiI	GGNNCC	4 cut(s)	15, 115, 399, 418
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	64, 109, 279, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 565
Bse1I	ACTGG	2 cut(s)	165, 444
Bse21I	CCTNAGG	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	384, 641
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	64, 109, 279, 695
BseGI	GGATG	3 cut(s)	53, 190, 589
BseLI	CCNNNNNNNGG	2 cut(s)	99, 565
BseMI	GCAATG	2 cut(s)	384, 641
BseMII	CTCAG	5 cut(s)	98, 171, 435, 634, 843
BseNI	ACTGG	2 cut(s)	165, 444
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	421, 482, 595
BsgI	GTGCAG	2 cut(s)	336, 420
BshFI	GGCC	2 cut(s)	14, 132
BsiHKAI	GWGCWC	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	99, 565
BsmAI	GTCTC	1 cut(s)	832
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	2 cut(s)	507, 723
BsnI	GGCC	2 cut(s)	14, 132
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp1407I	TGTACA	1 cut(s)	764
BspANI	GGCC	2 cut(s)	14, 132
BspCNI	CTCAG	5 cut(s)	97, 172, 434, 633, 842
BspLI	GGNNCC	4 cut(s)	15, 115, 399, 418
BsrDI	GCAATG	2 cut(s)	384, 641
BsrGI	TGTACA	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	165, 444
BssECI	CCNNGG	4 cut(s)	64, 109, 279, 695
BssT1I	CCWWGG	2 cut(s)	279, 695
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	647, 668, 764
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	764
BstDEI	CTNAG	8 cut(s)	72, 84, 127, 180, 224, 421, 620, 829
BstDSI	CCRYGG	2 cut(s)	64, 109
BstF5I	GGATG	3 cut(s)	53, 190, 589
BstMAI	GTCTC	1 cut(s)	832
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 504, 584
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	421, 482, 595
BstV2I	GAAGAC	1 cut(s)	804
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	14, 132
BtgI	CCRYGG	2 cut(s)	64, 109
BtsCI	GGATG	3 cut(s)	53, 190, 589
BtsIMutI	CAGTG	2 cut(s)	437, 643
Cfr13I	GGNCC	2 cut(s)	13, 416
Csp6I	GTAC	2 cut(s)	43, 765
CviAII	CATG	1 cut(s)	737
CviJI	RGCY	8 cut(s)	14, 76, 132, 228, 358, 495, 624, 855
CviKI_1	RGCY	8 cut(s)	14, 76, 132, 228, 358, 495, 624, 855
CviQI	GTAC	2 cut(s)	43, 765
DdeI	CTNAG	8 cut(s)	72, 84, 127, 180, 224, 421, 620, 829
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	279, 695
Eco147I	AGGCCT	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	279, 695
ErhI	CCWWGG	2 cut(s)	279, 695
FaeI	CATG	1 cut(s)	740
FaiI	YATR	9 cut(s)	209, 374, 476, 492, 521, 527, 734, 738, 750
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	435, 496, 609
FokI	GGATG	3 cut(s)	40, 197, 596
Fsp4HI	GCNGC	3 cut(s)	435, 496, 609
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	435, 496, 609
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	14, 132
Hin1II	CATG	1 cut(s)	740
HincII	GTYRAC	2 cut(s)	664, 760
HindII	GTYRAC	2 cut(s)	664, 760
HinfI	GANTC	8 cut(s)	38, 122, 136, 320, 351, 656, 781, 825
HpaI	GTTAAC	1 cut(s)	664
HphI	GGTGA	3 cut(s)	282, 316, 724
Hpy166II	GTNNAC	5 cut(s)	416, 541, 597, 664, 760
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	2 cut(s)	461, 785
Hpy8I	GTNNAC	5 cut(s)	416, 541, 597, 664, 760
HpyAV	CCTTC	1 cut(s)	646
HpyCH4III	ACNGT	3 cut(s)	647, 668, 764
HpyCH4V	TGCA	6 cut(s)	317, 389, 437, 578, 587, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 504, 584
HpyF3I	CTNAG	8 cut(s)	72, 84, 127, 180, 224, 421, 620, 829
Hsp92II	CATG	1 cut(s)	740
KspAI	GTTAAC	1 cut(s)	664
LmnI	GCTCC	3 cut(s)	81, 189, 852
LpnPI	CCDG	9 cut(s)	85, 146, 146, 332, 345, 368, 372, 425, 644
Lsp1109I	GCAGC	3 cut(s)	421, 482, 595
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	548
MboII	GAAGA	4 cut(s)	215, 716, 727, 809
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	5 cut(s)	342, 391, 443, 454, 802
MlyI	GAGTC	6 cut(s)	32, 130, 131, 314, 775, 834
MnlI	CCTC	7 cut(s)	31, 34, 175, 346, 430, 497, 622
MseI	TTAA	3 cut(s)	663, 677, 834
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	2 cut(s)	507, 723
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	11, 504, 584
NlaIII	CATG	1 cut(s)	740
NlaIV	GGNNCC	4 cut(s)	15, 115, 399, 418
PceI	AGGCCT	1 cut(s)	132
PctI	GAATGC	2 cut(s)	507, 723
PfeI	GAWTC	2 cut(s)	351, 656
PkrI	GCNGC	3 cut(s)	436, 497, 610
PleI	GAGTC	6 cut(s)	32, 130, 130, 314, 775, 833
PpsI	GAGTC	6 cut(s)	32, 130, 130, 314, 775, 833
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	15, 115, 399, 418
PspPI	GGNCC	2 cut(s)	13, 416
RsaI	GTAC	2 cut(s)	44, 766
RsaNI	GTAC	2 cut(s)	43, 765
SaqAI	TTAA	3 cut(s)	663, 677, 834
SatI	GCNGC	3 cut(s)	435, 496, 609
Sau96I	GGNCC	2 cut(s)	13, 416
SchI	GAGTC	6 cut(s)	32, 130, 131, 314, 775, 834
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	517
SetI	ASST	9 cut(s)	23, 78, 104, 230, 497, 593, 626, 714, 857
SfaNI	GCATC	1 cut(s)	574
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	5 cut(s)	342, 391, 443, 454, 802
SseBI	AGGCCT	1 cut(s)	132
SspI	AATATT	1 cut(s)	245
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	279, 695
TaaI	ACNGT	3 cut(s)	647, 668, 764
TaqI	TCGA	1 cut(s)	786
TasI	AATT	5 cut(s)	342, 391, 443, 454, 802
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	351, 656
Tru1I	TTAA	3 cut(s)	663, 677, 834
Tru9I	TTAA	3 cut(s)	663, 677, 834
TscAI	CASTG	2 cut(s)	444, 650
TseI	GCWGC	3 cut(s)	434, 495, 608
TspDTI	ATGAA	3 cut(s)	224, 542, 549
TspGWI	ACGGA	2 cut(s)	53, 98
TspRI	CASTG	2 cut(s)	444, 650
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	3 cut(s)	391, 443, 454
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.