Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

9886967 .. 9889432

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTCTGGCCAATCCGCCAACAAGCTTCTCGGATTGCTCCAACAGTGGCTGCTCTAAGTTTTCTAAGACCTAGTTTAAGTAATACCCATCTGGGTGTTCATAGACACTCCTCTGGTTCAAACCAGAGAAATTTGGCACAAGCTGAAGAAGTCCAAGTAGGATTACTGCATGAAATCAAAAGACATCCAGTTGTAAGAGTGGAGGCTTTGAGTGATGTGTCAAAAGCTAAGAATGGGCCCAACTTTAGTGAAATGAAGGATAGGTTTCTCAGTTTTAAGAAGCACAAATTTTTGAAAGAGTCGGAGCATTTCCAAAATCTGGCTCAAGTTCAAGATCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGAGTATGCCCCTCTAACATCCTAGGCTTTCAACCTGGAGAGGCGTTTATGATTAGAAATGTAGCAAACCTTGTTCCCCCCTTTGAGAATGGTGCATCAGAGACTAATGCAGCCCTCGAGTTTGCAGTAAATACTCTTGAAGTTGAGAATATATTCGTCATTGGCCACAGTAGTTGTGCAGGAATTGAGACTCTCATGACAATGCAAGATGATGGTGATTCAAGTAGCTTTACTCATAGATGGGTTATGAATGCTAAAGTCGCCAAATTAAGAACAAAAGCTGATGCGCTGCACCTTAGCTTTGATCAGCAATGCAGATACTGTGAGAAGGAATCAATCAATCGTTCATTATTGAATTTGCTTGCGTATCCATGGATAGCAGACAAAGTAGGGAAGAATATGCTCTCTGTTCATGGAGGATACTATGATTTCTTGAATTGTGCATTTGATAAATGGACACTTGATGTAAATGGTAACAGCAGTACCCTAGGGGACAAACAGTACTTGGTTAAAGATCGAGAACTTTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

301

Amino Acids

33.75

Weight (kDa)

7.69

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	116 - 267	5.5e-39	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	2 cut(s)	8, 532
AcsI	RAATTY	3 cut(s)	130, 287, 724
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	853, 872
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	8 cut(s)	120, 295, 332, 401, 509, 591, 724, 805
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	6 cut(s)	26, 143, 227, 597, 650, 669
AluI	AGCT	6 cut(s)	26, 143, 227, 597, 650, 669
Alw26I	GTCTC	2 cut(s)	464, 551
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	2 cut(s)	50, 690
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	8, 236, 532
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	50, 479, 658
ApoI	RAATTY	3 cut(s)	130, 287, 724
Asp700I	GAANNNNTTC	1 cut(s)	521
AspA2I	CCTAGG	2 cut(s)	391, 856
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	236, 237
AsuHPI	GGTGA	2 cut(s)	361, 596
AvaI	CYCGRG	1 cut(s)	485
AvrII	CCTAGG	2 cut(s)	391, 856
BaeGI	GKGCMC	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	835, 868
BalI	TGGCCA	2 cut(s)	10, 534
BanII	GRGCYC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	37, 491, 645
BccI	CCATC	3 cut(s)	96, 575, 603
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	2 cut(s)	747, 782
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	464, 551
BfaI	CTAG	4 cut(s)	72, 369, 392, 857
BfuI	GTATCC	2 cut(s)	747, 782
BisI	GCNGC	3 cut(s)	51, 480, 659
BlnI	CCTAGG	2 cut(s)	391, 856
BlsI	GCNGC	3 cut(s)	52, 481, 660
BmcAI	AGTACT	1 cut(s)	872
Bme1390I	CCNGG	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	236, 237
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	473, 643
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	391, 740, 856
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	391, 740, 856
BseGI	GGATG	2 cut(s)	184, 387
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	37, 491, 645
BsgI	GTGCAG	3 cut(s)	381, 567, 644
BshFI	GGCC	3 cut(s)	10, 238, 534
BsiHKCI	CYCGRG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	464, 551
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	10, 238, 534
BsoBI	CYCGRG	1 cut(s)	485
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	334, 673, 883
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	3 cut(s)	10, 238, 534
BspCNI	CTCAG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	391, 740, 856
BssMI	GATC	3 cut(s)	334, 673, 883
BssT1I	CCWWGG	3 cut(s)	391, 740, 856
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	46, 539, 692, 870
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	6 cut(s)	56, 65, 228, 269, 339, 665
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	2 cut(s)	184, 387
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	3 cut(s)	337, 676, 886
BstMAI	GTCTC	2 cut(s)	464, 551
BstMBI	GATC	3 cut(s)	334, 673, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	37, 491, 645
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	2 cut(s)	747, 782
BsuRI	GGCC	3 cut(s)	10, 238, 534
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	2 cut(s)	184, 387
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	732
CaiI	CAGNNNCTG	2 cut(s)	50, 690
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	236, 237
Csp6I	GTAC	2 cut(s)	852, 871
CspCI	CAANNNNNGTGG	2 cut(s)	524, 559
CviAII	CATG	4 cut(s)	170, 565, 741, 782
CviQI	GTAC	2 cut(s)	852, 871
DdeI	CTNAG	6 cut(s)	56, 65, 228, 269, 339, 665
DpnI	GATC	3 cut(s)	336, 675, 885
DpnII	GATC	3 cut(s)	334, 673, 883
EaeI	YGGCCR	2 cut(s)	8, 532
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	3 cut(s)	391, 740, 856
Eco24I	GRGCYC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	3 cut(s)	391, 740, 856
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	3 cut(s)	391, 740, 856
FaeI	CATG	4 cut(s)	173, 568, 744, 785
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	4 cut(s)	169, 564, 740, 781
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	51, 480, 659
FokI	GGATG	2 cut(s)	171, 374
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	51, 480, 659
FspBI	CTAG	4 cut(s)	72, 369, 392, 857
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	3 cut(s)	51, 480, 659
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	10, 238, 534
HhaI	GCGC	1 cut(s)	658
Hin1II	CATG	4 cut(s)	173, 568, 744, 785
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	5 cut(s)	299, 365, 559, 587, 701
HphI	GGTGA	2 cut(s)	361, 596
Hpy188I	TCNGA	4 cut(s)	33, 304, 469, 902
Hpy188III	TCNNGA	6 cut(s)	332, 369, 506, 565, 802, 887
HpyAV	CCTTC	2 cut(s)	250, 691
HpyCH4III	ACNGT	4 cut(s)	46, 539, 692, 870
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	6 cut(s)	56, 65, 228, 269, 339, 665
Hsp92II	CATG	4 cut(s)	173, 568, 744, 785
HspAI	GCGC	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	3 cut(s)	334, 673, 883
LmnI	GCTCC	2 cut(s)	43, 304
LpnPI	CCDG	8 cut(s)	77, 99, 137, 201, 305, 390, 417, 534
Lsp1109I	GCAGC	3 cut(s)	37, 491, 645
LweI	GCATC	2 cut(s)	473, 643
MaeI	CTAG	4 cut(s)	72, 369, 392, 857
MaeIII	GTNAC	1 cut(s)	842
MalI	GATC	3 cut(s)	336, 675, 885
MboI	GATC	3 cut(s)	334, 673, 883
MboII	GAAGA	2 cut(s)	158, 775
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	2 cut(s)	10, 534
MluCI	AATT	6 cut(s)	130, 287, 552, 635, 724, 805
MluNI	TGGCCA	2 cut(s)	10, 534
MlyI	GAGTC	3 cut(s)	308, 359, 553
MmeI	TCCRAC	2 cut(s)	65, 282
MnlI	CCTC	6 cut(s)	121, 196, 391, 403, 494, 779
Mox20I	TGGCCA	2 cut(s)	10, 534
MroXI	GAANNNNTTC	1 cut(s)	521
MscI	TGGCCA	2 cut(s)	10, 534
MseI	TTAA	4 cut(s)	77, 276, 638, 879
MslI	CAYNNNNRTG	2 cut(s)	93, 569
Msp20I	TGGCCA	2 cut(s)	10, 534
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	629
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	3 cut(s)	334, 673, 883
NlaIII	CATG	4 cut(s)	173, 568, 744, 785
NlaIV	GGNNCC	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	485
PagI	TCATGA	1 cut(s)	564
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	587, 701
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	52, 481, 660
PleI	GAGTC	3 cut(s)	307, 359, 553
PpsI	GAGTC	3 cut(s)	307, 359, 553
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	238
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	236, 237
PspXI	VCTCGAGB	1 cut(s)	485
PstNI	CAGNNNCTG	2 cut(s)	50, 690
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	853, 872
RsaNI	GTAC	2 cut(s)	852, 871
RseI	CAYNNNNRTG	2 cut(s)	93, 569
SaqAI	TTAA	4 cut(s)	77, 276, 638, 879
SatI	GCNGC	3 cut(s)	51, 480, 659
Sau3AI	GATC	3 cut(s)	334, 673, 883
Sau96I	GGNCC	2 cut(s)	236, 237
ScaI	AGTACT	1 cut(s)	872
SchI	GAGTC	3 cut(s)	308, 359, 553
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	473, 643
Sfr274I	CTCGAG	1 cut(s)	485
SlaI	CTCGAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	93, 569
SmlI	CTYRAG	2 cut(s)	324, 485
SmoI	CTYRAG	2 cut(s)	324, 485
Sse9I	AATT	6 cut(s)	130, 287, 552, 635, 724, 805
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	4 cut(s)	72, 369, 392, 857
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	3 cut(s)	391, 740, 856
TaaI	ACNGT	4 cut(s)	46, 539, 692, 870
TaqI	TCGA	2 cut(s)	486, 886
TasI	AATT	6 cut(s)	130, 287, 552, 635, 724, 805
TatI	WGTACW	1 cut(s)	870
TfiI	GAWTC	2 cut(s)	587, 701
Tru1I	TTAA	4 cut(s)	77, 276, 638, 879
Tru9I	TTAA	4 cut(s)	77, 276, 638, 879
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	3 cut(s)	50, 479, 658
TspDTI	ATGAA	6 cut(s)	89, 186, 269, 632, 705, 770
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	319
XapI	RAATTY	3 cut(s)	130, 287, 724
XbaI	TCTAGA	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	485
XmaJI	CCTAGG	2 cut(s)	391, 856
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	4 cut(s)	72, 369, 392, 857
ZrmI	AGTACT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.