Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

29293053 .. 29297165

Gene Structure 4113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24321

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAATTCTGCCCCCGACCTCCTCCTCCCTTTCAAAAGACTCGTCGTACTCATTCTCGTTACATATTCAATCATCCACAATCTTTGGTTCTAAGCTCAAATCAGGGGAATTTCAGCAGACCCGTTTCAGGTTATTCAGTAATTCCAACAGTTATCCAGGTTTGACCATAAAGGCTTCCAGAGAGTCCTTAGGGCTGACTCAAGAACTTAAGAGCAACAAACTGGAGAGAGTAGTGGAAACTGAAGATGGGAGCGATTTGTTTGAAGATATGAAACATCGGTTTCTTAGCTTCAAAAAGCATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAAGCACCAAAGTTCTTGGTGATTGGTTGTGCAGACTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCAGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTAGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAATAGATAAAAGTAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTCAACCGTTCGTTGTTAAACCTACTCACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTTTCTGTACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACACTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAATCTCAGTTAAAAGTCATATACTTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

8.36

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	122 - 275	1.8e-42	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
Acc16I	TGCGCA	1 cut(s)	443
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	460
AcsI	RAATTY	4 cut(s)	110, 454, 506, 517
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	4 cut(s)	50, 462, 798, 829
AfiI	CCNNNNNNNGG	2 cut(s)	129, 628
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	36, 71, 266, 295, 527, 871
AjnI	CCWGG	2 cut(s)	157, 421
AluBI	AGCT	7 cut(s)	97, 291, 558, 615, 682, 687, 918
AluI	AGCT	7 cut(s)	97, 291, 558, 615, 682, 687, 918
Alw21I	GWGCWC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	497, 668, 671
ApoI	RAATTY	4 cut(s)	110, 454, 506, 517
ArsI	GACNNNNNNTTYG	4 cut(s)	29, 61, 815, 847
Asp718I	GGTACC	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	379, 787
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	867
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	3 cut(s)	484, 655, 658
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	159, 423
BfaI	CTAG	2 cut(s)	387, 503
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	498, 669, 672
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	3 cut(s)	499, 670, 673
Bme1390I	CCNGG	2 cut(s)	159, 423
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	462, 481
BmrFI	CCNGG	2 cut(s)	159, 423
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	867
BpmI	CTGGAG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 628
Bse1I	ACTGG	1 cut(s)	228
Bse21I	CCTNAGG	1 cut(s)	190
Bse3DI	GCAATG	2 cut(s)	447, 704
BseBI	CCWGG	2 cut(s)	159, 423
BseDI	CCNNGG	1 cut(s)	758
BseGI	GGATG	2 cut(s)	74, 652
BseLI	CCNNNNNNNGG	2 cut(s)	129, 628
BseMI	GCAATG	2 cut(s)	447, 704
BseMII	CTCAG	3 cut(s)	498, 697, 906
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	13, 16
BseXI	GCAGC	3 cut(s)	484, 655, 658
BsgI	GTGCAG	2 cut(s)	399, 483
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	580
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	129, 628
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	2 cut(s)	570, 786
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp1407I	TGTACA	2 cut(s)	796, 827
Bsp1720I	GCTNAGC	1 cut(s)	683
BspCNI	CTCAG	3 cut(s)	497, 696, 905
BspLI	GGNNCC	2 cut(s)	462, 481
BspT107I	GGYRCC	1 cut(s)	460
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	447, 704
BsrGI	TGTACA	2 cut(s)	796, 827
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	758
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	2 cut(s)	159, 423
Bst4CI	ACNGT	4 cut(s)	152, 710, 731, 827
BstAFI	CTTAAG	1 cut(s)	209
BstAUI	TGTACA	2 cut(s)	796, 827
BstDEI	CTNAG	6 cut(s)	93, 190, 287, 484, 683, 892
BstF5I	GGATG	2 cut(s)	74, 652
BstHHI	GCGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	159, 423
BstSCI	CCNGG	2 cut(s)	157, 421
BstV1I	GCAGC	3 cut(s)	484, 655, 658
BstV2I	GAAGAC	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	74, 652
BtsIMutI	CAGTG	1 cut(s)	706
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	4 cut(s)	49, 461, 797, 828
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	1 cut(s)	800
CviQI	GTAC	4 cut(s)	49, 461, 797, 828
DdeI	CTNAG	6 cut(s)	93, 190, 287, 484, 683, 892
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	157, 421
EcoT14I	CCWWGG	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	1 cut(s)	803
FalI	AAGNNNNNCTT	4 cut(s)	671, 703, 774, 806
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	799
Fnu4HI	GCNGC	3 cut(s)	498, 669, 672
FokI	GGATG	2 cut(s)	61, 659
Fsp4HI	GCNGC	3 cut(s)	498, 669, 672
FspBI	CTAG	2 cut(s)	387, 503
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	3 cut(s)	498, 669, 672
GsuI	CTGGAG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	803
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	2 cut(s)	727, 823
HindII	GTYRAC	2 cut(s)	727, 823
HinfI	GANTC	7 cut(s)	41, 185, 199, 383, 414, 719, 888
HphI	GGTGA	2 cut(s)	379, 787
Hpy166II	GTNNAC	4 cut(s)	479, 660, 727, 823
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	4 cut(s)	180, 203, 311, 524
Hpy8I	GTNNAC	4 cut(s)	479, 660, 727, 823
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	637, 709
HpyCH4III	ACNGT	4 cut(s)	152, 710, 731, 827
HpyCH4V	TGCA	6 cut(s)	341, 380, 452, 500, 650, 702
HpyF3I	CTNAG	6 cut(s)	93, 190, 287, 484, 683, 892
Hsp92II	CATG	1 cut(s)	803
HspAI	GCGC	1 cut(s)	442
KpnI	GGTACC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	252, 915
Lsp1109I	GCAGC	3 cut(s)	484, 655, 658
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	387, 503
MaeIII	GTNAC	2 cut(s)	60, 551
MboII	GAAGA	5 cut(s)	257, 278, 779, 790, 872
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	7 cut(s)	6, 110, 142, 454, 506, 517, 865
MlyI	GAGTC	4 cut(s)	35, 193, 194, 377
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	31, 34, 37, 409, 493, 560, 685
MseI	TTAA	3 cut(s)	210, 740, 897
MspA1I	CMGCKG	1 cut(s)	558
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	159, 423
Mva1269I	GAATGC	2 cut(s)	570, 786
MvaI	CCWGG	2 cut(s)	159, 423
NlaIII	CATG	1 cut(s)	803
NlaIV	GGNNCC	2 cut(s)	462, 481
NmuCI	GTSAC	1 cut(s)	551
NsbI	TGCGCA	1 cut(s)	443
PctI	GAATGC	2 cut(s)	570, 786
PfeI	GAWTC	3 cut(s)	414, 719, 888
PkrI	GCNGC	3 cut(s)	499, 670, 673
PleI	GAGTC	4 cut(s)	35, 193, 193, 377
PpsI	GAGTC	4 cut(s)	35, 193, 193, 377
Psp6I	CCWGG	2 cut(s)	157, 421
PspGI	CCWGG	2 cut(s)	157, 421
PspN4I	GGNNCC	2 cut(s)	462, 481
PspPI	GGNCC	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	4 cut(s)	50, 462, 798, 829
RsaNI	GTAC	4 cut(s)	49, 461, 797, 828
SaqAI	TTAA	3 cut(s)	210, 740, 897
SatI	GCNGC	3 cut(s)	498, 669, 672
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	4 cut(s)	35, 193, 194, 377
ScrFI	CCNGG	2 cut(s)	159, 423
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	201, 209
SmoI	CTYRAG	2 cut(s)	201, 209
Sse9I	AATT	7 cut(s)	6, 110, 142, 454, 506, 517, 865
SspMI	CTAG	2 cut(s)	387, 503
StyD4I	CCNGG	2 cut(s)	157, 421
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	4 cut(s)	152, 710, 731, 827
TaqI	TCGA	1 cut(s)	849
TasI	AATT	7 cut(s)	6, 110, 142, 454, 506, 517, 865
TatI	WGTACW	2 cut(s)	796, 827
TfiI	GAWTC	3 cut(s)	414, 719, 888
Tru1I	TTAA	3 cut(s)	210, 740, 897
Tru9I	TTAA	3 cut(s)	210, 740, 897
TscAI	CASTG	1 cut(s)	713
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	497, 668, 671
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	287, 605, 612
TspRI	CASTG	1 cut(s)	713
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	4 cut(s)	110, 454, 506, 517
XspI	CTAG	2 cut(s)	387, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.