Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

10111055 .. 10114752

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G068900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTATTCTTGCGCCAACCTCTGTTTCAAAAGACCCCTTGTCCCTTCGCACCTCCTCCAATTCCTCCTCCTCGGATCTCCAGAGAATCTCATTGAACCCTCCAAGAATCTTTGGTTCTAAGATGAAATCAGGGAAGATTGAGCAGACCCCGTCGAGATTATTGACTGCTTCCAACAATTGTTCAGATTTAACTGCAAAGGCTTCAAGAAAGCCGTTAGGGCTCACTGAAGAACTTAAAAACAACAAACTAGAGAGCGTAGTAGAAACTGATGATGGGAGCTGTTTATTTGAAGATATGAAACGTCGGTTTCTAAGCTTCAAAAAGCATAAATATATGGAAAACTTGGAACATTATCAAAATCTTGCGGAGGGTCAAGCACCAAAGTTCATGGTGATTTCTTGTGCAGATTCTAGGGTATGCCCTTCAACCATTTTGGGATTCCAACCGGGAGAAGCATTTATAGTGCGCAACATTGCGAATTTGGTGCCCTCCTTCAAGAGTGGACCCTCAGAAACAAATGCTGCATTAGAATTTTCTGTGAATGCCCTGGAAGTTGAGAACATATTGGTCGTTGGTCACAGCTGCTGTGGAGGCATTCGTGCTCTTATGAGTATGGATGATGAAGTAGAGAAAAGTAGCTTTATCCAAAATTGGGTTGTTGTTGGGAGGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGTTTTGACCAGCAGTGCAAACACTGTGAGAAGGAGTCGATCAACCGTTCGTTGTTGAACCTTCTCACGTACCCGTGGATAGAAGAGAAAGTGAAGAATGGTATTCTTTCTGTGCATGGTGGTTATTATGACTTTGTTGACTGTACATTTGAAAAATGGACACTGGATTATAAGGAAGACAACTTGAAGGAGAAACACGGCAGAATTTCTGTAAAAAATCATTTGTTTTGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

316

Amino Acids

35.3

Weight (kDa)

8.01

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
Acc16I	TGCGCA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	487
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	3 cut(s)	481, 533, 915
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	782, 856
AfiI	CCNNNNNNNGG	1 cut(s)	655
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	549
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	5 cut(s)	282, 318, 585, 642, 709
AluI	AGCT	5 cut(s)	282, 318, 585, 642, 709
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	588
ApeKI	GCWGC	4 cut(s)	524, 585, 695, 698
ApoI	RAATTY	3 cut(s)	481, 533, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	842, 874
AspLEI	GCGC	2 cut(s)	16, 471
AspS9I	GGNCC	2 cut(s)	506, 942
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	506, 942
BaeGI	GKGCMC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	4 cut(s)	511, 572, 682, 685
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	199, 925
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	450
BfaI	CTAG	2 cut(s)	251, 414
BglI	GCCNNNNNGGC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	525, 586, 696, 699
BlsI	GCNGC	4 cut(s)	526, 587, 697, 700
Bme1390I	CCNGG	2 cut(s)	450, 551
Bme18I	GGWCC	2 cut(s)	506, 942
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	506, 942
BmiI	GGNNCC	2 cut(s)	489, 508
BmrFI	CCNGG	2 cut(s)	450, 551
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	894
BpmI	CTGGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	780
BsaJI	CCNNGG	3 cut(s)	72, 549, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	72, 549, 785
BseGI	GGATG	2 cut(s)	625, 679
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	525, 724
BseNI	ACTGG	1 cut(s)	879
BseRI	GAGGAG	3 cut(s)	46, 58, 61
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	511, 572, 682, 685
BsgI	GTGCAG	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	2 cut(s)	550, 597
Bsp1286I	GDGCHC	3 cut(s)	225, 492, 607
Bsp1407I	TGTACA	1 cut(s)	854
Bsp143I	GATC	2 cut(s)	76, 750
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	524, 723
BspLI	GGNNCC	2 cut(s)	489, 508
BspPI	GGATC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	854
BsrI	ACTGG	1 cut(s)	879
BssECI	CCNNGG	3 cut(s)	72, 549, 785
BssMI	GATC	2 cut(s)	76, 750
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	3 cut(s)	737, 758, 854
Bst6I	CTCTTC	1 cut(s)	789
BstAUI	TGTACA	1 cut(s)	854
BstBAI	YACGTR	1 cut(s)	780
BstDEI	CTNAG	4 cut(s)	120, 314, 511, 710
BstDSI	CCRYGG	1 cut(s)	785
BstF5I	GGATG	2 cut(s)	625, 679
BstHHI	GCGC	2 cut(s)	16, 471
BstKTI	GATC	2 cut(s)	79, 753
BstMBI	GATC	2 cut(s)	76, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 220, 594
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	448, 549
BstSLI	GKGCMC	1 cut(s)	492
BstV1I	GCAGC	4 cut(s)	511, 572, 682, 685
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	785
BtsCI	GGATG	2 cut(s)	625, 679
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	4 cut(s)	225, 731, 733, 872
CaiI	CAGNNNCTG	1 cut(s)	588
CfoI	GCGC	2 cut(s)	16, 471
Cfr13I	GGNCC	2 cut(s)	506, 942
Csp6I	GTAC	2 cut(s)	781, 855
CviAII	CATG	2 cut(s)	391, 827
CviQI	GTAC	2 cut(s)	781, 855
DdeI	CTNAG	4 cut(s)	120, 314, 511, 710
DpnI	GATC	2 cut(s)	78, 752
DpnII	GATC	2 cut(s)	76, 750
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	789
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	506, 942
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	394, 830
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	2 cut(s)	390, 826
Fnu4HI	GCNGC	4 cut(s)	525, 586, 696, 699
FokI	GGATG	2 cut(s)	632, 686
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	525, 586, 696, 699
FspBI	CTAG	2 cut(s)	251, 414
FspI	TGCGCA	1 cut(s)	470
GlaI	GCGC	2 cut(s)	15, 470
GluI	GCNGC	4 cut(s)	525, 586, 696, 699
GsuI	CTGGAG	1 cut(s)	65
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	16, 471
Hin1II	CATG	2 cut(s)	394, 830
Hin6I	GCGC	2 cut(s)	14, 469
HinP1I	GCGC	2 cut(s)	14, 469
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	5 cut(s)	87, 108, 410, 441, 746
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	506, 687, 850
Hpy188I	TCNGA	3 cut(s)	76, 187, 514
Hpy188III	TCNNGA	5 cut(s)	82, 156, 207, 499, 945
Hpy8I	GTNNAC	3 cut(s)	506, 687, 850
Hpy99I	CGWCG	2 cut(s)	157, 309
HpyAV	CCTTC	6 cut(s)	56, 435, 505, 736, 782, 892
HpyCH4III	ACNGT	3 cut(s)	737, 758, 854
HpyCH4IV	ACGT	2 cut(s)	304, 779
HpyCH4V	TGCA	6 cut(s)	197, 407, 527, 677, 729, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 220, 594
HpyF3I	CTNAG	4 cut(s)	120, 314, 511, 710
HpySE526I	ACGT	2 cut(s)	304, 779
Hsp92II	CATG	2 cut(s)	394, 830
HspAI	GCGC	2 cut(s)	14, 469
Kzo9I	GATC	2 cut(s)	76, 750
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	7 cut(s)	95, 117, 462, 536, 563, 734, 860
Lsp1109I	GCAGC	4 cut(s)	511, 572, 682, 685
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	2 cut(s)	251, 414
MaeII	ACGT	2 cut(s)	304, 779
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	2 cut(s)	78, 752
MboI	GATC	2 cut(s)	76, 750
MboII	GAAGA	6 cut(s)	148, 242, 305, 806, 817, 899
MfeI	CAATTG	1 cut(s)	178
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	225, 492, 607
MluCI	AATT	6 cut(s)	61, 178, 481, 533, 652, 915
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	2 cut(s)	198, 469
MseI	TTAA	2 cut(s)	191, 237
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	450, 551
MunI	CAATTG	1 cut(s)	178
Mva1269I	GAATGC	2 cut(s)	550, 597
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	11, 220, 594
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	2 cut(s)	76, 750
NlaIII	CATG	2 cut(s)	394, 830
NlaIV	GGNNCC	2 cut(s)	489, 508
NmuCI	GTSAC	1 cut(s)	578
NsbI	TGCGCA	1 cut(s)	470
PctI	GAATGC	2 cut(s)	550, 597
PfeI	GAWTC	4 cut(s)	87, 108, 410, 441
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	4 cut(s)	526, 587, 697, 700
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
Ppu21I	YACGTR	1 cut(s)	780
PsiI	TTATAA	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	489, 508
PspPI	GGNCC	2 cut(s)	506, 942
PstNI	CAGNNNCTG	1 cut(s)	588
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	585
RsaI	GTAC	2 cut(s)	782, 856
RsaNI	GTAC	2 cut(s)	781, 855
SaqAI	TTAA	2 cut(s)	191, 237
SatI	GCNGC	4 cut(s)	525, 586, 696, 699
Sau3AI	GATC	2 cut(s)	76, 750
Sau96I	GGNCC	2 cut(s)	506, 942
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	2 cut(s)	450, 551
SduI	GDGCHC	3 cut(s)	225, 492, 607
SfaNI	GCATC	1 cut(s)	664
SinI	GGWCC	2 cut(s)	506, 942
Sse9I	AATT	6 cut(s)	61, 178, 481, 533, 652, 915
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	251, 414
StyD4I	CCNGG	2 cut(s)	448, 549
TaaI	ACNGT	3 cut(s)	737, 758, 854
TaiI	ACGT	2 cut(s)	307, 782
TaqI	TCGA	2 cut(s)	155, 749
TasI	AATT	6 cut(s)	61, 178, 481, 533, 652, 915
TatI	WGTACW	1 cut(s)	854
TfiI	GAWTC	4 cut(s)	87, 108, 410, 441
Tru1I	TTAA	2 cut(s)	191, 237
Tru9I	TTAA	2 cut(s)	191, 237
TscAI	CASTG	4 cut(s)	232, 731, 740, 879
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	4 cut(s)	524, 585, 695, 698
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	4 cut(s)	140, 314, 379, 639
TspRI	CASTG	4 cut(s)	232, 731, 740, 879
Tth111I	GACNNNGTC	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	506, 942
XapI	RAATTY	3 cut(s)	481, 533, 915
XspI	CTAG	2 cut(s)	251, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.