Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

31269162 .. 31273973

Gene Structure 4812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAATTCTGGCCCCGACCTCCTCCTCCCTTTCAAAAGACTCGTCGTACTCATTCTCGTTACATATTCAATCATCCACAATCTTTGGTTCTAAGCTCAAATCAGGGGAATTTCAGCAGACCCGTTTCAGGTTATTCAGTAATTCCAACAGTTATCCAGGTTTGACCATAAAGGCTTCCAGAGAATCCTTAGGGCTGACTCAACAACTTAAGAGCAACAAACTGGAGAGAGCAGTGGAAACTGAAGATGGGAGCGATTTGTTTGAAGATATGAAACATCGGTTTCTTAGCTTCAAAAAGCATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAAGCACCAAAGTTCTTGGTGATTGGTTGTGCAGATTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCTGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCTGAAACAAATGCTGCACTAGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAATAGACAAAAGTAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGTAACTGATTTTATATTTTATGTAATTACAAATGTGTGCCATGCACTAGGTTTCTTTTTTTTTTTTTTTTGGATATATGGGGACCCAAAAGAAAAAACTACATATGAGAAACTATGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

279

Amino Acids

31.39

Weight (kDa)

8.39

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	122 - 236	2.7e-31	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	443
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	460
AcsI	RAATTY	4 cut(s)	110, 454, 506, 517
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	50, 462
AfiI	CCNNNNNNNGG	2 cut(s)	129, 628
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	36, 71, 266, 295, 527
AjnI	CCWGG	2 cut(s)	157, 421
AluBI	AGCT	6 cut(s)	97, 291, 558, 615, 682, 687
AluI	AGCT	6 cut(s)	97, 291, 558, 615, 682, 687
Alw21I	GWGCWC	1 cut(s)	580
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	3 cut(s)	497, 668, 671
ApoI	RAATTY	4 cut(s)	110, 454, 506, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp718I	GGTACC	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	4 cut(s)	13, 479, 799, 834
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	3 cut(s)	479, 799, 834
AxyI	CCTNAGG	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	3 cut(s)	484, 655, 658
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	159, 423
BfaI	CTAG	3 cut(s)	387, 503, 764
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	498, 669, 672
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	3 cut(s)	499, 670, 673
Bme1390I	CCNGG	2 cut(s)	159, 423
Bme18I	GGWCC	3 cut(s)	479, 799, 834
BmgT120I	GGNCC	4 cut(s)	13, 479, 799, 834
BmiI	GGNNCC	5 cut(s)	15, 462, 481, 800, 801
BmrFI	CCNGG	2 cut(s)	159, 423
BmsI	GCATC	1 cut(s)	637
BpmI	CTGGAG	2 cut(s)	245, 444
Bpu1102I	GCTNAGC	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 628
Bse1I	ACTGG	1 cut(s)	228
Bse21I	CCTNAGG	1 cut(s)	190
Bse3DI	GCAATG	2 cut(s)	447, 704
BseBI	CCWGG	2 cut(s)	159, 423
BseGI	GGATG	2 cut(s)	74, 652
BseLI	CCNNNNNNNGG	2 cut(s)	129, 628
BseMI	GCAATG	2 cut(s)	447, 704
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	13, 16
BseXI	GCAGC	3 cut(s)	484, 655, 658
BsgI	GTGCAG	2 cut(s)	399, 483
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	580
BslFI	GGGAC	2 cut(s)	381, 812
BslI	CCNNNNNNNGG	2 cut(s)	129, 628
BsmFI	GGGAC	2 cut(s)	381, 812
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp1720I	GCTNAGC	1 cut(s)	683
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	696
BspLI	GGNNCC	5 cut(s)	15, 462, 481, 800, 801
BspT107I	GGYRCC	1 cut(s)	460
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	447, 704
BsrI	ACTGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	159, 423
Bst4CI	ACNGT	2 cut(s)	152, 710
BstAFI	CTTAAG	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	93, 190, 287, 683
BstF5I	GGATG	2 cut(s)	74, 652
BstHHI	GCGC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	159, 423
BstSCI	CCNGG	2 cut(s)	157, 421
BstV1I	GCAGC	3 cut(s)	484, 655, 658
Bsu36I	CCTNAGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	74, 652
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	240, 706
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	4 cut(s)	13, 479, 799, 834
Csp6I	GTAC	2 cut(s)	49, 461
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	1 cut(s)	758
CviQI	GTAC	2 cut(s)	49, 461
DdeI	CTNAG	4 cut(s)	93, 190, 287, 683
Eco47I	GGWCC	3 cut(s)	479, 799, 834
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	157, 421
FaeI	CATG	1 cut(s)	761
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	2 cut(s)	381, 812
FatI	CATG	1 cut(s)	757
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	498, 669, 672
FokI	GGATG	2 cut(s)	61, 659
Fsp4HI	GCNGC	3 cut(s)	498, 669, 672
FspBI	CTAG	3 cut(s)	387, 503, 764
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	3 cut(s)	498, 669, 672
GsuI	CTGGAG	2 cut(s)	245, 444
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	761
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	5 cut(s)	41, 185, 199, 383, 414
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	479, 660
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	180, 311, 524
Hpy8I	GTNNAC	2 cut(s)	479, 660
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	637, 709
HpyCH4III	ACNGT	2 cut(s)	152, 710
HpyCH4V	TGCA	7 cut(s)	341, 380, 452, 500, 650, 702, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	93, 190, 287, 683
Hsp92II	CATG	1 cut(s)	761
HspAI	GCGC	1 cut(s)	442
KflI	GGGWCCC	1 cut(s)	799
KpnI	GGTACC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	3 cut(s)	484, 655, 658
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	3 cut(s)	387, 503, 764
MaeIII	GTNAC	3 cut(s)	60, 551, 718
MboII	GAAGA	2 cut(s)	257, 278
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	7 cut(s)	6, 110, 142, 454, 506, 517, 741
MlyI	GAGTC	2 cut(s)	35, 193
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	31, 34, 37, 409, 493, 560, 685
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	558
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	159, 423
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	159, 423
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	820
NlaIII	CATG	1 cut(s)	761
NlaIV	GGNNCC	5 cut(s)	15, 462, 481, 800, 801
NmuCI	GTSAC	1 cut(s)	551
NsbI	TGCGCA	1 cut(s)	443
PctI	GAATGC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	185, 383, 414
PkrI	GCNGC	3 cut(s)	499, 670, 673
PleI	GAGTC	2 cut(s)	35, 193
PpsI	GAGTC	2 cut(s)	35, 193
PpuMI	RGGWCCY	1 cut(s)	799
Psp5II	RGGWCCY	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	157, 421
PspGI	CCWGG	2 cut(s)	157, 421
PspN4I	GGNNCC	5 cut(s)	15, 462, 481, 800, 801
PspPI	GGNCC	4 cut(s)	13, 479, 799, 834
PspPPI	RGGWCCY	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	2 cut(s)	50, 462
RsaNI	GTAC	2 cut(s)	49, 461
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	498, 669, 672
Sau96I	GGNCC	4 cut(s)	13, 479, 799, 834
SchI	GAGTC	2 cut(s)	35, 193
ScrFI	CCNGG	2 cut(s)	159, 423
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	3 cut(s)	479, 799, 834
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	7 cut(s)	6, 110, 142, 454, 506, 517, 741
SspMI	CTAG	3 cut(s)	387, 503, 764
StyD4I	CCNGG	2 cut(s)	157, 421
TaaI	ACNGT	2 cut(s)	152, 710
TasI	AATT	7 cut(s)	6, 110, 142, 454, 506, 517, 741
TfiI	GAWTC	3 cut(s)	185, 383, 414
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	240, 713
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	497, 668, 671
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	287, 605, 612
TspRI	CASTG	2 cut(s)	240, 713
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	479, 799, 834
XapI	RAATTY	4 cut(s)	110, 454, 506, 517
XspI	CTAG	3 cut(s)	387, 503, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.