Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

29647450 .. 29650794

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0300000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGGTTCCGAGCAGAACAGGTTTCCTCAGCAGGAACGGAGAAAGAGATGGGGAGGATGTTTGGGTGCATTCTCTTGTTTCGGTACACAGAAAGGTGGAAAGCGTATAGTCCCTGCATCTCGTATACCTGACGGCAATGCATCAGCGACCCAGCCAAATGGACCCCAAGCAGCTGGGTTGGCAAACCAAGCAACAGGATTAGCTCCATCTCTTTTAGCTCCGCCTTCTTCGCCAGCATCATTTACAAATTCCGCCCTTCCTTCAACAGCTCAGTCACCCAGTTGTTACTTGTCATTAGCTGCGAACTCACCTGGAGGTCCTTCAAACAGAATGTTTGCAACTGGGCCATACGCCAATGAAACACAACTGGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCGTCCACAGCTCCTCTTACTCCCCCTCCAGAATTGGCACATCTAACTACTCCCTCTTCCCCAGATGTGCCATTTGCTCGTTTCCTCTCATCTTCAGCGGATATTAAAAGCACTGAGAAGACCAATTACATTGCTGCAAATGATCTTCAAGCAACATATTCGCTGTATCCTGGGAGCCCTGCTAGTAGTCTCAGATCTCCAATTTCAAGGGCATCAAATGACTGTCGCGATTTCCCCCCACAGTGGGATCCCTCAGTTTCTCCCCAAAATGGAAACTATCCAAGGAGTGGTTCTGGCAGGTTGTATGGGCATGACACAACTGGACCCTCTGTGGCATCTCAAGACTCGAATTTCTTCTGTCCTGCAACATTTGCACAGTTTTATCTGGATAATCCTCCATTCCCTCATACTGGAGGAAGGTTAAGTGTTTCCAAGGATTCAGATGCTTACTCAACTAGTGGAAATGGAAATGGAAATGGAAGTCAGAACAGGCACAATAGAAGCCCTAAGCAAGATGTGGAAGAATTAGAAGCCTATAGAGCATCCTTTGGGTTCAGTGCTGATGAAATTATTACCACCACCCAGTATGTTGAGATTACTGATGTCATGGACGAATCATTTACCATTGGCTCTCATAAATCTCCCCCAGAGGAAAGCGTAGAGCCTAAATCTGCCGTTGCAGGACGCTCTGACTTGCCAGTATTGTCCAATGGATATGAAGATCAAAAGTCCCGAAGACAGCCTTGTGATGTCTCTCGATCAACTACGCCTGGTATGCGTACTGTGGCCAATGAAGAAGACATATTCTCAAAGATGGGGTCATCTAAATCGAGCAGAAGGTATCAGATGGGGCAATCTTGCTCTGATGCGGAAATCGACTATAGAAGAGGAAGAAGCTTACGAGAGGGCAAAGGGGATTTCACATGGCATGACAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

448

Amino Acids

48.06

Weight (kDa)

6.13

Isoelectric Point (pI)

69.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	693
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	221, 252, 503, 1274
AclWI	GGATC	2 cut(s)	647, 660
AcoI	YGGCCR	1 cut(s)	1191
AcsI	RAATTY	2 cut(s)	247, 754
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	85, 1186
AfiI	CCNNNNNNNGG	5 cut(s)	648, 649, 674, 692, 815
AgsI	TTSAA	4 cut(s)	264, 324, 554, 612
AhlI	ACTAGT	1 cut(s)	860
AjnI	CCWGG	3 cut(s)	310, 574, 1174
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AluBI	AGCT	7 cut(s)	173, 203, 218, 269, 299, 416, 1302
AluI	AGCT	7 cut(s)	173, 203, 218, 269, 299, 416, 1302
Alw26I	GTCTC	3 cut(s)	376, 599, 1162
AlwI	GGATC	2 cut(s)	647, 660
AoxI	GGCC	2 cut(s)	344, 1191
ApeKI	GCWGC	3 cut(s)	170, 299, 539
ApoI	RAATTY	2 cut(s)	247, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	1208, 1240
Asp700I	GAANNNNTTC	1 cut(s)	758
AspS9I	GGNCC	4 cut(s)	161, 317, 344, 728
AsuHPI	GGTGA	2 cut(s)	267, 300
AvaII	GGWCC	3 cut(s)	161, 317, 728
BalI	TGGCCA	1 cut(s)	1193
BamHI	GGATCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	584
BarI	GAAGNNNNNNTAC	2 cut(s)	515, 547
BbsI	GAAGAC	3 cut(s)	530, 1147, 1209
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	182, 286, 526
BccI	CCATC	4 cut(s)	42, 214, 1213, 1246
BceAI	ACGGC	3 cut(s)	148, 391, 1064
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciT130I	CCWGG	3 cut(s)	312, 576, 1176
BciVI	GTATCC	1 cut(s)	582
BcoDI	GTCTC	3 cut(s)	376, 599, 1162
BcuI	ACTAGT	1 cut(s)	860
BfaI	CTAG	2 cut(s)	588, 861
BfmI	CTRYAG	2 cut(s)	940, 1285
BfuAI	ACCTGC	1 cut(s)	693
BfuI	GTATCC	1 cut(s)	582
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	3 cut(s)	171, 300, 540
BlsI	GCNGC	3 cut(s)	172, 301, 541
Bme1390I	CCNGG	3 cut(s)	312, 576, 1176
Bme18I	GGWCC	3 cut(s)	161, 317, 728
BmgT120I	GGNCC	4 cut(s)	161, 317, 344, 728
BmiI	GGNNCC	5 cut(s)	7, 163, 581, 654, 730
BmrFI	CCNGG	3 cut(s)	312, 576, 1176
BmrI	ACTGGG	3 cut(s)	273, 351, 982
BmsI	GCATC	8 cut(s)	125, 149, 245, 626, 749, 838, 956, 1261
BmuI	ACTGGG	3 cut(s)	273, 351, 982
BpiI	GAAGAC	3 cut(s)	530, 1147, 1209
BpmI	CTGGAG	3 cut(s)	333, 417, 837
Bpu10I	CCTNAGC	2 cut(s)	27, 912
BpuEI	CTTGAG	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	575, 686, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	5 cut(s)	648, 649, 674, 692, 815
Bse1I	ACTGG	7 cut(s)	279, 346, 372, 730, 820, 988, 1103
Bse3DI	GCAATG	2 cut(s)	142, 534
BseBI	CCWGG	3 cut(s)	312, 576, 1176
BseDI	CCNNGG	3 cut(s)	575, 686, 837
BseGI	GGATG	2 cut(s)	62, 947
BseLI	CCNNNNNNNGG	5 cut(s)	648, 649, 674, 692, 815
BseMI	GCAATG	2 cut(s)	142, 534
BseMII	CTCAG	6 cut(s)	41, 284, 393, 510, 610, 672
BseNI	ACTGG	7 cut(s)	279, 346, 372, 730, 820, 988, 1103
BseRI	GAGGAG	2 cut(s)	366, 408
BseXI	GCAGC	3 cut(s)	182, 286, 526
BseYI	CCCAGC	2 cut(s)	150, 173
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	346, 1193
BslFI	GGGAC	2 cut(s)	95, 1120
BslI	CCNNNNNNNGG	5 cut(s)	648, 649, 674, 692, 815
BsmAI	GTCTC	3 cut(s)	376, 599, 1162
BsmFI	GGGAC	2 cut(s)	95, 1120
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	346, 1193
Bso31I	GGTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp143I	GATC	5 cut(s)	547, 599, 652, 1126, 1163
Bsp68I	TCGCGA	1 cut(s)	633
BspACI	CCGC	4 cut(s)	221, 252, 503, 1274
BspANI	GGCC	2 cut(s)	346, 1193
BspCNI	CTCAG	6 cut(s)	40, 283, 394, 511, 609, 671
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	5 cut(s)	7, 163, 581, 654, 730
BspMI	ACCTGC	1 cut(s)	693
BspPI	GGATC	2 cut(s)	647, 660
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	142, 534
BsrI	ACTGG	7 cut(s)	279, 346, 372, 730, 820, 988, 1103
BssECI	CCNNGG	3 cut(s)	575, 686, 837
BssMI	GATC	5 cut(s)	547, 599, 652, 1126, 1163
BssNAI	GTATAC	1 cut(s)	125
BssT1I	CCWWGG	2 cut(s)	686, 837
Bst1107I	GTATAC	1 cut(s)	125
Bst2UI	CCWGG	3 cut(s)	312, 576, 1176
Bst4CI	ACNGT	4 cut(s)	629, 648, 783, 1189
Bst6I	CTCTTC	2 cut(s)	466, 1285
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	7 cut(s)	27, 270, 402, 519, 596, 658, 912
BstF5I	GGATG	2 cut(s)	62, 947
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	5 cut(s)	550, 602, 655, 1129, 1166
BstMAI	GTCTC	3 cut(s)	376, 599, 1162
BstMBI	GATC	5 cut(s)	547, 599, 652, 1126, 1163
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 188, 229, 776, 944, 1180
BstNI	CCWGG	3 cut(s)	312, 576, 1176
BstSCI	CCNGG	3 cut(s)	310, 574, 1174
BstSFI	CTRYAG	2 cut(s)	940, 1285
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	182, 286, 526
BstV2I	GAAGAC	3 cut(s)	530, 1147, 1209
BstX2I	RGATCY	2 cut(s)	599, 652
BstXI	CCANNNNNNTGG	2 cut(s)	158, 173
BstYI	RGATCY	2 cut(s)	599, 652
BstZ17I	GTATAC	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	346, 1193
BtsCI	GGATG	2 cut(s)	62, 947
BtsIMutI	CAGTG	3 cut(s)	516, 653, 967
BtuMI	TCGCGA	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	4 cut(s)	161, 317, 344, 728
CseI	GACGC	1 cut(s)	1098
Csp6I	GTAC	2 cut(s)	84, 1185
CviAII	CATG	4 cut(s)	716, 1012, 1329, 1334
CviQI	GTAC	2 cut(s)	84, 1185
DdeI	CTNAG	7 cut(s)	27, 270, 402, 519, 596, 658, 912
DpnI	GATC	5 cut(s)	549, 601, 654, 1128, 1165
DpnII	GATC	5 cut(s)	547, 599, 652, 1126, 1163
EaeI	YGGCCR	1 cut(s)	1191
Eam1104I	CTCTTC	2 cut(s)	466, 1285
EarI	CTCTTC	2 cut(s)	466, 1285
EciI	GGCGGA	2 cut(s)	210, 241
Eco130I	CCWWGG	2 cut(s)	686, 837
Eco24I	GRGCYC	1 cut(s)	584
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	161, 317, 728
Eco57I	CTGAAG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	310, 574, 1174
EcoT14I	CCWWGG	2 cut(s)	686, 837
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	2 cut(s)	686, 837
FaeI	CATG	4 cut(s)	719, 1015, 1332, 1337
FalI	AAGNNNNNCTT	2 cut(s)	1132, 1164
FaqI	GGGAC	2 cut(s)	95, 1120
FatI	CATG	4 cut(s)	715, 1011, 1328, 1333
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	171, 300, 540
FokI	GGATG	2 cut(s)	69, 934
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	171, 300, 540
FspBI	CTAG	2 cut(s)	588, 861
GluI	GCNGC	3 cut(s)	171, 300, 540
GsaI	CCCAGC	2 cut(s)	154, 177
GsuI	CTGGAG	3 cut(s)	333, 417, 837
HaeIII	GGCC	2 cut(s)	346, 1193
HgaI	GACGC	1 cut(s)	1098
Hin1II	CATG	4 cut(s)	719, 1015, 1332, 1337
HindIII	AAGCTT	1 cut(s)	1300
HinfI	GANTC	3 cut(s)	749, 842, 1019
HphI	GGTGA	2 cut(s)	267, 300
Hpy166II	GTNNAC	3 cut(s)	86, 125, 411
Hpy188I	TCNGA	7 cut(s)	10, 599, 847, 891, 1096, 1251, 1270
Hpy188III	TCNNGA	6 cut(s)	434, 632, 746, 791, 1137, 1161
Hpy8I	GTNNAC	3 cut(s)	86, 125, 411
HpyAV	CCTTC	7 cut(s)	234, 266, 270, 330, 403, 816, 1236
HpyCH4III	ACNGT	4 cut(s)	629, 648, 783, 1189
HpyCH4V	TGCA	8 cut(s)	68, 116, 140, 338, 542, 770, 779, 1085
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 188, 229, 776, 944, 1180
HpyF3I	CTNAG	7 cut(s)	27, 270, 402, 519, 596, 658, 912
Hsp92II	CATG	4 cut(s)	719, 1015, 1332, 1337
Kzo9I	GATC	5 cut(s)	547, 599, 652, 1126, 1163
LmnI	GCTCC	4 cut(s)	208, 223, 421, 579
Lsp1109I	GCAGC	3 cut(s)	182, 286, 526
LweI	GCATC	8 cut(s)	125, 149, 245, 626, 749, 838, 956, 1261
MaeI	CTAG	2 cut(s)	588, 861
MaeIII	GTNAC	2 cut(s)	273, 284
MalI	GATC	5 cut(s)	549, 601, 654, 1128, 1165
MboI	GATC	5 cut(s)	547, 599, 652, 1126, 1163
MflI	RGATCY	2 cut(s)	599, 652
MhlI	GDGCHC	1 cut(s)	584
MlsI	TGGCCA	1 cut(s)	1193
MluCI	AATT	7 cut(s)	247, 437, 529, 606, 754, 929, 972
MluNI	TGGCCA	1 cut(s)	1193
MlyI	GAGTC	1 cut(s)	743
Mox20I	TGGCCA	1 cut(s)	1193
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	1193
MseI	TTAA	2 cut(s)	510, 827
Msp20I	TGGCCA	1 cut(s)	1193
MspA1I	CMGCKG	2 cut(s)	173, 503
MspR9I	CCNGG	3 cut(s)	312, 576, 1176
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	3 cut(s)	312, 576, 1176
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	6 cut(s)	179, 188, 229, 776, 944, 1180
NdeII	GATC	5 cut(s)	547, 599, 652, 1126, 1163
NlaIII	CATG	4 cut(s)	719, 1015, 1332, 1337
NlaIV	GGNNCC	5 cut(s)	7, 163, 581, 654, 730
NmuCI	GTSAC	1 cut(s)	273
NruI	TCGCGA	1 cut(s)	633
NsiI	ATGCAT	1 cut(s)	142
PctI	GAATGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	842, 1019
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	172, 301, 541
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PpuMI	RGGWCCY	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	310, 574, 1174
PspFI	CCCAGC	2 cut(s)	150, 173
PspGI	CCWGG	3 cut(s)	310, 574, 1174
PspN4I	GGNNCC	5 cut(s)	7, 163, 581, 654, 730
PspPI	GGNCC	4 cut(s)	161, 317, 344, 728
PspPPI	RGGWCCY	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	599, 652
PvuII	CAGCTG	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	633
RsaI	GTAC	2 cut(s)	85, 1186
RsaNI	GTAC	2 cut(s)	84, 1185
SaqAI	TTAA	2 cut(s)	510, 827
SatI	GCNGC	3 cut(s)	171, 300, 540
Sau3AI	GATC	5 cut(s)	547, 599, 652, 1126, 1163
Sau96I	GGNCC	4 cut(s)	161, 317, 344, 728
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	3 cut(s)	312, 576, 1176
SduI	GDGCHC	1 cut(s)	584
SfaNI	GCATC	8 cut(s)	125, 149, 245, 626, 749, 838, 956, 1261
SfcI	CTRYAG	2 cut(s)	940, 1285
SinI	GGWCC	3 cut(s)	161, 317, 728
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
SpeI	ACTAGT	1 cut(s)	860
Sse9I	AATT	7 cut(s)	247, 437, 529, 606, 754, 929, 972
SsiI	CCGC	4 cut(s)	221, 252, 503, 1274
SspMI	CTAG	2 cut(s)	588, 861
StyD4I	CCNGG	3 cut(s)	310, 574, 1174
StyI	CCWWGG	2 cut(s)	686, 837
TaaI	ACNGT	4 cut(s)	629, 648, 783, 1189
TaqI	TCGA	4 cut(s)	752, 1162, 1235, 1281
TasI	AATT	7 cut(s)	247, 437, 529, 606, 754, 929, 972
TfiI	GAWTC	2 cut(s)	842, 1019
Tru1I	TTAA	2 cut(s)	510, 827
Tru9I	TTAA	2 cut(s)	510, 827
TscAI	CASTG	3 cut(s)	523, 653, 967
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	3 cut(s)	170, 299, 539
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	4 cut(s)	372, 984, 1137, 1212
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	523, 653, 967
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	161, 317, 728
XapI	RAATTY	2 cut(s)	247, 754
XmiI	GTMKAC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	2 cut(s)	588, 861
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.