Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

62497995 .. 62500718

Gene Structure 2724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG455100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAGGATAGGTTTCTCAGTTTTAAGAAGCACAAATATTTGAAAGAGCCGGAGCATTTCCAAAATCTGGCTCAAGTTCAAGATCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGAGTATGCCCCTCTAACATCCTAGGCTTTCAACCTGGAGAGGCGTTTATGATTAGAAATGTAGCAAACCTTGTTCCCCCCTTTGAGAATGGTGCATCAGAGACTAATGCAGCCCTCGAGTTTGCAGTAAATACTCTTGAAGTTGAGAATATATTCGTCATTGGCCACAGTAGTTGTGCAGGAATTGAGACTCTCATGACAATGCAAGATGATGGTGATTCAAGTAGCTTTACTCATAGATGGGTTGTGAATGCTAAAGTCGCCAAATTAAGAACAAAAGCTGATGCGCTGCACCTTAGCTTTGATCAGCAATGCAGATACTGTGAGAAGGAATCGATCAATCGTTCATTATTGAATTTGCTAGCATATCCATGGATAGCAGACAAAGTAGGGAAGAATATGCTCTCTGTTCATGGAGGATACTATGATTTCTTGAATTGTGCATTTGATAAATGGACACTTGATGTAAATGGTAACAACAGTACCCTAGGGGACAGACAGTACTTGGTTAAAGATCGAGAACTTTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

216

Amino Acids

24.55

Weight (kDa)

6.07

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	32 - 183	3.7e-39	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	601, 620
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	7 cut(s)	43, 80, 149, 257, 339, 472, 553
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	345, 398, 417
AluI	AGCT	3 cut(s)	345, 398, 417
Alw26I	GTCTC	2 cut(s)	212, 299
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	227, 406
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	269
AspA2I	CCTAGG	2 cut(s)	139, 604
AspLEI	GCGC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	109, 344
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	233
AvrII	CCTAGG	2 cut(s)	139, 604
BaeI	ACNNNNGTAYC	2 cut(s)	583, 616
BalI	TGGCCA	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	239, 393
BccI	CCATC	2 cut(s)	323, 351
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	212, 299
BfaI	CTAG	4 cut(s)	117, 140, 479, 605
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	228, 407
BlnI	CCTAGG	2 cut(s)	139, 604
BlsI	GCNGC	2 cut(s)	229, 408
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	221, 391
BmtI	GCTAGC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	139, 488, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	139, 488, 604
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	239, 393
BsgI	GTGCAG	3 cut(s)	129, 315, 392
BshFI	GGCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	212, 299
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	82, 421, 453, 631
Bsp19I	CCATGG	1 cut(s)	488
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	452
BspHI	TCATGA	1 cut(s)	312
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	434
BssECI	CCNNGG	3 cut(s)	139, 488, 604
BssMI	GATC	4 cut(s)	82, 421, 453, 631
BssT1I	CCWWGG	3 cut(s)	139, 488, 604
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	4 cut(s)	287, 440, 599, 618
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	17, 87, 413
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	4 cut(s)	85, 424, 456, 634
BstMAI	GTCTC	2 cut(s)	212, 299
BstMBI	GATC	4 cut(s)	82, 421, 453, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	239, 393
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	452
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	1 cut(s)	438
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	600, 619
CspCI	CAANNNNNGTGG	2 cut(s)	272, 307
CviAII	CATG	3 cut(s)	313, 489, 530
CviJI	RGCY	8 cut(s)	49, 71, 144, 230, 282, 345, 398, 417
CviKI_1	RGCY	8 cut(s)	49, 71, 144, 230, 282, 345, 398, 417
CviQI	GTAC	2 cut(s)	600, 619
DdeI	CTNAG	3 cut(s)	17, 87, 413
DpnI	GATC	4 cut(s)	84, 423, 455, 633
DpnII	GATC	4 cut(s)	82, 421, 453, 631
EaeI	YGGCCR	1 cut(s)	280
Eco130I	CCWWGG	3 cut(s)	139, 488, 604
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	3 cut(s)	139, 488, 604
ErhI	CCWWGG	3 cut(s)	139, 488, 604
FaeI	CATG	3 cut(s)	316, 492, 533
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	3 cut(s)	312, 488, 529
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	228, 407
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	228, 407
FspBI	CTAG	4 cut(s)	117, 140, 479, 605
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	228, 407
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	316, 492, 533
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	4 cut(s)	113, 307, 335, 449
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	109, 344
Hpy188I	TCNGA	2 cut(s)	217, 650
Hpy188III	TCNNGA	6 cut(s)	80, 117, 254, 313, 550, 635
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	287, 440, 599, 618
HpyCH4V	TGCA	9 cut(s)	110, 212, 227, 242, 296, 322, 409, 432, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	17, 87, 413
Hsp92II	CATG	3 cut(s)	316, 492, 533
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	82, 421, 453, 631
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	53, 63, 138, 165, 282
Lsp1109I	GCAGC	2 cut(s)	239, 393
LweI	GCATC	2 cut(s)	221, 391
MaeI	CTAG	4 cut(s)	117, 140, 479, 605
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	4 cut(s)	84, 423, 455, 633
MboI	GATC	4 cut(s)	82, 421, 453, 631
MboII	GAAGA	1 cut(s)	523
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	4 cut(s)	300, 383, 472, 553
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	107, 301
MnlI	CCTC	4 cut(s)	139, 151, 242, 527
Mox20I	TGGCCA	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	3 cut(s)	24, 386, 627
MslI	CAYNNNNRTG	2 cut(s)	317, 487
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	4 cut(s)	82, 421, 453, 631
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	3 cut(s)	316, 492, 533
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	312
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	335, 449
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	229, 408
PleI	GAGTC	2 cut(s)	107, 301
PpsI	GAGTC	2 cut(s)	107, 301
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspXI	VCTCGAGB	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	2 cut(s)	601, 620
RsaNI	GTAC	2 cut(s)	600, 619
RseI	CAYNNNNRTG	2 cut(s)	317, 487
SaqAI	TTAA	3 cut(s)	24, 386, 627
SatI	GCNGC	2 cut(s)	228, 407
Sau3AI	GATC	4 cut(s)	82, 421, 453, 631
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	2 cut(s)	107, 301
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	7 cut(s)	14, 154, 189, 347, 400, 414, 419
SfaNI	GCATC	2 cut(s)	221, 391
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	317, 487
SmlI	CTYRAG	2 cut(s)	72, 233
SmoI	CTYRAG	2 cut(s)	72, 233
Sse9I	AATT	4 cut(s)	300, 383, 472, 553
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	4 cut(s)	117, 140, 479, 605
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	3 cut(s)	139, 488, 604
TaaI	ACNGT	4 cut(s)	287, 440, 599, 618
TaqI	TCGA	3 cut(s)	234, 452, 634
TasI	AATT	4 cut(s)	300, 383, 472, 553
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	335, 449
Tru1I	TTAA	3 cut(s)	24, 386, 627
Tru9I	TTAA	3 cut(s)	24, 386, 627
TseI	GCWGC	2 cut(s)	227, 406
TspDTI	ATGAA	3 cut(s)	17, 453, 518
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	233
XmaJI	CCTAGG	2 cut(s)	139, 604
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	4 cut(s)	117, 140, 479, 605
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.