Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

25969143 .. 25972251

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35470.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTCTGGCCAATCCGCCAAAAAGCTTCTTGGATGGCAGCCGTAAGTACTCTAGGACCTGGTTTAAGAAATACCCATCTGGGTGTTCATAAACACTCCTCTAGATCAAACCAGAGAAATTTGGCACAAGCTGAAGAAACCCATCTAGGATTACTGCATGAAATCAAAAGGCATCCAGTTGTAAGACCGGAGGCTTTGAGTGATGTGTCAAAAGCTAAGAATGGACTCAACTTTGGTGAAATGAAGGATAGGTTTCTCAGTTTCAAGAAGCAGAAATTTTTGAGAGAGTCAGAGCATTTCCAAAATCTAGCTCAAGTTCAAGATCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGAGTATGCCCCTCTAACATACTAGGCTTTCAACCTGGAGAGGCCTTTATGATTAGAAATGTAGCAAACCTCGTTCCCCCTTTTGAGAATGGAGCATCAGAGACTAATGCAGCCCTCGAATTTGCAGTAAATACTCTTGAAGTTGAGAACATATTTGTCATTGGCCACAGTAGTTGTGCAGGAATTGAGACCCTCATGACAATGCAAGATGATGGTGATTCAAGCTTTACGCATAGATGGGTTGTGAATGCTAAAGTTGCCAAATTAAGAACAAAAGCTGCTGCGCCGCACCTTAGCTTTGATCAGCAATGCAGGAATCGATCAATCGTTCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

232

Amino Acids

25.86

Weight (kDa)

9.3

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	112 - 262	9e-39	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	16, 644
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	2 cut(s)	8, 520
AcsI	RAATTY	3 cut(s)	118, 275, 476
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	265, 320, 389, 497, 579
AjnI	CCWGG	2 cut(s)	58, 391
AluBI	AGCT	7 cut(s)	26, 131, 215, 311, 582, 635, 654
AluI	AGCT	7 cut(s)	26, 131, 215, 311, 582, 635, 654
Alw26I	GTCTC	2 cut(s)	452, 539
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	3 cut(s)	8, 399, 520
ApeKI	GCWGC	4 cut(s)	38, 467, 635, 638
ApoI	RAATTY	3 cut(s)	118, 275, 476
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	248, 349, 584
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	2 cut(s)	10, 522
BbvI	GCAGC	4 cut(s)	50, 479, 622, 625
BccI	CCATC	5 cut(s)	28, 84, 150, 563, 588
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	60, 393
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	2 cut(s)	452, 539
BfaI	CTAG	6 cut(s)	53, 102, 146, 308, 357, 380
BisI	GCNGC	5 cut(s)	39, 468, 636, 639, 644
BlsI	GCNGC	5 cut(s)	40, 469, 637, 640, 645
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	60, 393
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	2 cut(s)	60, 393
BmsI	GCATC	2 cut(s)	181, 461
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	671
BseBI	CCWGG	2 cut(s)	60, 393
BseCI	ATCGAT	1 cut(s)	676
BseGI	GGATG	2 cut(s)	39, 172
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	4 cut(s)	50, 479, 622, 625
BsgI	GTGCAG	2 cut(s)	369, 555
BshFI	GGCC	3 cut(s)	10, 401, 522
BshVI	ATCGAT	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	452, 539
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	3 cut(s)	10, 401, 522
Bso31I	GGTCTC	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	104, 322, 658, 677
BspACI	CCGC	2 cut(s)	16, 644
BspANI	GGCC	3 cut(s)	10, 401, 522
BspCNI	CTCAG	1 cut(s)	270
BspDI	ATCGAT	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	552
BspPI	GGATC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	4 cut(s)	104, 322, 658, 677
Bst2UI	CCWGG	2 cut(s)	60, 393
Bst4CI	ACNGT	1 cut(s)	527
BstDEI	CTNAG	4 cut(s)	216, 257, 327, 650
BstF5I	GGATG	2 cut(s)	39, 172
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	4 cut(s)	107, 325, 661, 680
BstMAI	GTCTC	2 cut(s)	452, 539
BstMBI	GATC	4 cut(s)	104, 322, 658, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	2 cut(s)	60, 393
BstSCI	CCNGG	2 cut(s)	58, 391
BstV1I	GCAGC	4 cut(s)	50, 479, 622, 625
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	10, 401, 522
BsuTUI	ATCGAT	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	39, 172
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	1 cut(s)	56
ClaI	ATCGAT	1 cut(s)	676
CsiI	ACCWGGT	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	512, 547
CviAII	CATG	2 cut(s)	158, 553
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	4 cut(s)	216, 257, 327, 650
DpnI	GATC	4 cut(s)	106, 324, 660, 679
DpnII	GATC	4 cut(s)	104, 322, 658, 677
EaeI	YGGCCR	2 cut(s)	8, 520
EciI	GGCGGA	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	58, 391
FaeI	CATG	2 cut(s)	161, 556
FaiI	YATR	9 cut(s)	90, 159, 335, 364, 377, 407, 509, 554, 591
FatI	CATG	2 cut(s)	157, 552
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	5 cut(s)	39, 468, 636, 639, 644
FokI	GGATG	2 cut(s)	46, 159
Fsp4HI	GCNGC	5 cut(s)	39, 468, 636, 639, 644
FspBI	CTAG	6 cut(s)	53, 102, 146, 308, 357, 380
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	5 cut(s)	39, 468, 636, 639, 644
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	10, 401, 522
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	2 cut(s)	161, 556
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HindIII	AAGCTT	2 cut(s)	24, 580
HinfI	GANTC	5 cut(s)	225, 287, 353, 575, 673
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	248, 349, 584
Hpy188I	TCNGA	2 cut(s)	292, 457
Hpy188III	TCNNGA	6 cut(s)	102, 265, 320, 357, 494, 553
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	7 cut(s)	157, 350, 467, 482, 536, 562, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	4 cut(s)	216, 257, 327, 650
Hsp92II	CATG	2 cut(s)	161, 556
HspAI	GCGC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	104, 322, 658, 677
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	4 cut(s)	50, 479, 622, 625
LweI	GCATC	2 cut(s)	181, 461
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	6 cut(s)	53, 102, 146, 308, 357, 380
MalI	GATC	4 cut(s)	106, 324, 660, 679
MboI	GATC	4 cut(s)	104, 322, 658, 677
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	1 cut(s)	322
MlsI	TGGCCA	2 cut(s)	10, 522
MluCI	AATT	5 cut(s)	118, 275, 476, 540, 620
MluNI	TGGCCA	2 cut(s)	10, 522
MlyI	GAGTC	3 cut(s)	219, 296, 347
MnlI	CCTC	7 cut(s)	109, 184, 379, 391, 437, 482, 560
Mox20I	TGGCCA	2 cut(s)	10, 522
MscI	TGGCCA	2 cut(s)	10, 522
MseI	TTAA	2 cut(s)	65, 623
MslI	CAYNNNNRTG	2 cut(s)	81, 557
Msp20I	TGGCCA	2 cut(s)	10, 522
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	60, 393
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	2 cut(s)	60, 393
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	4 cut(s)	104, 322, 658, 677
NlaIII	CATG	2 cut(s)	161, 556
PagI	TCATGA	1 cut(s)	552
PceI	AGGCCT	1 cut(s)	401
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	575, 673
PkrI	GCNGC	5 cut(s)	40, 469, 637, 640, 645
PleI	GAGTC	3 cut(s)	219, 295, 347
PpsI	GAGTC	3 cut(s)	219, 295, 347
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	58, 391
PspGI	CCWGG	2 cut(s)	58, 391
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	81, 557
SaqAI	TTAA	2 cut(s)	65, 623
SatI	GCNGC	5 cut(s)	39, 468, 636, 639, 644
Sau3AI	GATC	4 cut(s)	104, 322, 658, 677
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	3 cut(s)	219, 296, 347
ScrFI	CCNGG	2 cut(s)	60, 393
SexAI	ACCWGGT	1 cut(s)	58
SfaNI	GCATC	2 cut(s)	181, 461
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	81, 557
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	5 cut(s)	118, 275, 476, 540, 620
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	2 cut(s)	16, 644
SspMI	CTAG	6 cut(s)	53, 102, 146, 308, 357, 380
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	58, 391
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	474, 676
TasI	AATT	5 cut(s)	118, 275, 476, 540, 620
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	575, 673
Tru1I	TTAA	2 cut(s)	65, 623
Tru9I	TTAA	2 cut(s)	65, 623
TseI	GCWGC	4 cut(s)	38, 467, 635, 638
TspDTI	ATGAA	3 cut(s)	77, 174, 257
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	3 cut(s)	118, 275, 476
XbaI	TCTAGA	2 cut(s)	101, 356
XspI	CTAG	6 cut(s)	53, 102, 146, 308, 357, 380
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.