Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

29633431 .. 29634015

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACAGTCGACGCAGTTTCTTTGACTCCAGCAGCTTCCATGGAGAAGGCGCAGCAACAGCAGCAGCAACATTCTCCTAAGTCGACCTTGGCAAAGCTGTGCCGTAAACTGTCTTCGAGAAAGGCAGAGAAGCGCACTCTATCGAGTCCAACCAGCAGCTCATGCAGCAGCGAGCTCGAGAAGGTGTTCTATTACTTTGACGAGAACGGTGACGGTAAGATATCCCCGGCAGAACTTCAGACCTGTGTGAGGACTGTCGGAGGAGAGCTCTCCGAGGAGGAAGCGCAAGCGGCCGTGGAGGCTTCCGATTTGGATGGGGATGGGATGCTGGGATTTGAAGAGTTCCAGAAGTTGATGGAGGCCACAAATGGAGACGAGGAGAACAAGAGCAAAGAGCTCAGCGATGCCTTTCGGATGTATGAAATGGAGGGCTCGGGGTGCATAACACCAGCAAGCTTGAAGAGGATGCTGGGTAGGTTGGGCGAGTCGCGCTCCATTGAGGATTGCAAGACCATGATTCGCATGTTCGACCTCAATGGAGATGGAGTTCTCAACTTTGATGAGTTCAGAATCATGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

194

Amino Acids

21.41

Weight (kDa)

4.71

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	57 - 119	2.6e-14	EF-hand domain pair
EF-hand_5	PF13202	59 - 83	6.9e-07	EF hand
EF-hand_8	PF13833	71 - 120	6.1e-10	EF-hand domain pair
EF-hand_7	PF13499	132 - 193	7.8e-11	EF-hand domain pair
EF-hand_8	PF13833	145 - 193	1.9e-10	EF-hand domain pair
EF-hand_1	PF00036	168 - 193	1.3e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	9, 83
AccII	CGCG	1 cut(s)	490
AciI	CCGC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	338, 460
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
AluBI	AGCT	7 cut(s)	35, 97, 159, 175, 268, 397, 456
AluI	AGCT	7 cut(s)	35, 97, 159, 175, 268, 397, 456
Alw21I	GWGCWC	3 cut(s)	177, 270, 399
Alw26I	GTCTC	1 cut(s)	366
Ama87I	CYCGRG	2 cut(s)	176, 433
AoxI	GGCC	2 cut(s)	291, 360
ApeKI	GCWGC	7 cut(s)	32, 52, 61, 64, 156, 165, 168
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	4 cut(s)	52, 135, 286, 492
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	176, 433
BanII	GRGCYC	4 cut(s)	177, 270, 399, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	3 cut(s)	177, 270, 399
BbvI	GCAGC	7 cut(s)	44, 64, 73, 76, 168, 177, 180
BccI	CCATC	5 cut(s)	308, 314, 349, 536, 571
BceAI	ACGGC	2 cut(s)	87, 278
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	8 cut(s)	33, 53, 62, 65, 157, 166, 169, 291
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	8 cut(s)	34, 54, 63, 66, 158, 167, 170, 292
Bme1390I	CCNGG	1 cut(s)	227
BmeT110I	CYCGRG	2 cut(s)	176, 433
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	3 cut(s)	315, 394, 456
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	4 cut(s)	252, 284, 476, 508
BpmI	CTGGAG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	5 cut(s)	39, 87, 225, 273, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
BseDI	CCNNGG	5 cut(s)	39, 87, 225, 273, 294
BseGI	GGATG	5 cut(s)	319, 325, 330, 420, 471
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	412
BseRI	GAGGAG	3 cut(s)	276, 290, 392
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	7 cut(s)	44, 64, 73, 76, 168, 177, 180
BseYI	CCCAGC	2 cut(s)	328, 469
Bsh1236I	CGCG	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	293, 362
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	3 cut(s)	177, 270, 399
BsiHKCI	CYCGRG	2 cut(s)	176, 433
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	293, 362
BsoBI	CYCGRG	2 cut(s)	176, 433
Bsp1286I	GDGCHC	4 cut(s)	177, 270, 399, 434
Bsp1720I	GCTNAGC	1 cut(s)	398
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	2 cut(s)	293, 362
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	573
BssECI	CCNNGG	5 cut(s)	39, 87, 225, 273, 294
BssT1I	CCWWGG	2 cut(s)	39, 87
Bst4CI	ACNGT	5 cut(s)	7, 111, 209, 215, 256
Bst6I	CTCTTC	2 cut(s)	333, 455
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	173, 288, 454
BstDEI	CTNAG	2 cut(s)	78, 398
BstDSI	CCRYGG	2 cut(s)	39, 294
BstENI	CCTNNNNNAGG	1 cut(s)	247
BstF5I	GGATG	5 cut(s)	319, 325, 330, 420, 471
BstFNI	CGCG	1 cut(s)	490
BstHHI	GCGC	4 cut(s)	52, 135, 286, 492
BstMAI	GTCTC	1 cut(s)	366
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 61, 162, 165, 290, 299, 438, 489
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	7 cut(s)	44, 64, 73, 76, 168, 177, 180
BstV2I	GAAGAC	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	293, 362
BtgI	CCRYGG	2 cut(s)	39, 294
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	5 cut(s)	319, 325, 330, 420, 471
Cac8I	GCNNGC	3 cut(s)	173, 288, 454
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	4 cut(s)	52, 135, 286, 492
CseI	GACGC	1 cut(s)	20
CviAII	CATG	6 cut(s)	40, 162, 514, 523, 574, 582
DdeI	CTNAG	2 cut(s)	78, 398
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	333, 455
EarI	CTCTTC	2 cut(s)	333, 455
Ecl136II	GAGCTC	3 cut(s)	175, 268, 397
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	39, 87
Eco24I	GRGCYC	4 cut(s)	177, 270, 399, 434
Eco32I	GATATC	1 cut(s)	222
Eco52I	CGGCCG	1 cut(s)	291
Eco53kI	GAGCTC	3 cut(s)	175, 268, 397
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	2 cut(s)	176, 433
EcoICRI	GAGCTC	3 cut(s)	175, 268, 397
EcoNI	CCTNNNNNAGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	39, 87
EcoT38I	GRGCYC	4 cut(s)	177, 270, 399, 434
ErhI	CCWWGG	2 cut(s)	39, 87
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	6 cut(s)	43, 165, 517, 526, 577, 585
FaiI	YATR	8 cut(s)	41, 163, 420, 443, 515, 524, 575, 583
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	6 cut(s)	39, 161, 513, 522, 573, 581
FblI	GTMKAC	2 cut(s)	9, 83
Fnu4HI	GCNGC	8 cut(s)	33, 53, 62, 65, 157, 166, 169, 291
FokI	GGATG	5 cut(s)	326, 332, 337, 427, 478
FriOI	GRGCYC	4 cut(s)	177, 270, 399, 434
Fsp4HI	GCNGC	8 cut(s)	33, 53, 62, 65, 157, 166, 169, 291
GlaI	GCGC	4 cut(s)	51, 134, 285, 491
GluI	GCNGC	8 cut(s)	33, 53, 62, 65, 157, 166, 169, 291
GsaI	CCCAGC	2 cut(s)	332, 473
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	293, 362
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	4 cut(s)	52, 135, 286, 492
Hin1II	CATG	6 cut(s)	43, 165, 517, 526, 577, 585
Hin6I	GCGC	4 cut(s)	50, 133, 284, 490
HinP1I	GCGC	4 cut(s)	50, 133, 284, 490
HincII	GTYRAC	2 cut(s)	10, 84
HindII	GTYRAC	2 cut(s)	10, 84
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	5 cut(s)	25, 145, 485, 517, 570
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	10, 84, 107
Hpy188I	TCNGA	6 cut(s)	240, 260, 274, 307, 414, 569
Hpy188III	TCNNGA	4 cut(s)	117, 178, 346, 574
Hpy8I	GTNNAC	3 cut(s)	10, 84, 107
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	40, 175
HpyCH4III	ACNGT	5 cut(s)	7, 111, 209, 215, 256
HpyCH4V	TGCA	3 cut(s)	165, 441, 507
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 61, 162, 165, 290, 299, 438, 489
HpyF3I	CTNAG	2 cut(s)	78, 398
Hsp92II	CATG	6 cut(s)	43, 165, 517, 526, 577, 585
HspAI	GCGC	4 cut(s)	50, 133, 284, 490
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	8 cut(s)	42, 166, 240, 256, 314, 359, 455, 462
Lsp1109I	GCAGC	7 cut(s)	44, 64, 73, 76, 168, 177, 180
LweI	GCATC	3 cut(s)	315, 394, 456
MaeIII	GTNAC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	105, 350, 472
MhlI	GDGCHC	4 cut(s)	177, 270, 399, 434
MlyI	GAGTC	3 cut(s)	19, 154, 494
MmeI	TCCRAC	2 cut(s)	173, 238
MroXI	GAANNNNTTC	1 cut(s)	185
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	8 cut(s)	58, 61, 162, 165, 290, 299, 438, 489
NciI	CCSGG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	39
NlaIII	CATG	6 cut(s)	43, 165, 517, 526, 577, 585
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	517, 570
PkrI	GCNGC	8 cut(s)	34, 54, 63, 66, 158, 167, 170, 292
PleI	GAGTC	3 cut(s)	19, 153, 493
PpsI	GAGTC	3 cut(s)	19, 153, 493
Psp124BI	GAGCTC	3 cut(s)	177, 270, 399
PspFI	CCCAGC	2 cut(s)	328, 469
SacI	GAGCTC	3 cut(s)	177, 270, 399
SalI	GTCGAC	2 cut(s)	8, 82
SatI	GCNGC	8 cut(s)	33, 53, 62, 65, 157, 166, 169, 291
SchI	GAGTC	3 cut(s)	19, 154, 494
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	4 cut(s)	177, 270, 399, 434
SfaNI	GCATC	3 cut(s)	315, 394, 456
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	1 cut(s)	290
SstI	GAGCTC	3 cut(s)	177, 270, 399
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	39, 87
TaaI	ACNGT	5 cut(s)	7, 111, 209, 215, 256
TaqI	TCGA	6 cut(s)	9, 83, 116, 143, 177, 528
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	517, 570
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	7 cut(s)	32, 52, 61, 64, 156, 165, 168
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	247
XceI	RCATGY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	9, 83
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.