Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

7350747 .. 7354063

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1054100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCTGTTCTCGCGCCAACCTCTGTCTCAAAATACTCAATCTCCAATTCCTCCTCCTCCTCGGATTTTCACAGAATCCCATTCAACACACGACCAATCTTTGGTTCTAAGCTGAAATCAGGAAAAGTTCAGCCGACCCAACTGAGATTATTGACTACTTCCGACAATTGTCCAGGGTTGACTGTAAAGGCTTCAAGAGAGTCCTTAGGGATCACCGAACAACATAAAAACATCAAACTGGAGAGAGTAGCTGAAACTGATGATCGGAGCGAATTGTTTGAGGATATGAAACAACGGTTTCTTGACTTCAAAAACCATAAATACATGGAAAACTTGGAACATTATCAAAACCTTGCAAAGGGTCAAGCGCCAAAGTTCATGGTCATTTCTTGTGCAGATTCTAGGGTATGCCCCTCAACCATTCTGGGATTCCAACCGGGAGAAGCATTTATAGTGCGCAACATTGCGAATTTGGTGCCCTCCCTTGAGAGTGGACCCTCAGAAACAAATGCTGCATTGGAATTCTCTGTGAATTCTCTGAAAGTCGAAAACATATTGGTCGTTGGTCACAGCTGCTGTGGAGGCATTCGTGCTCTTATGAGCATGGATGATGAAATAGAGAAAAGTAGCTTTATCCAAAATTGGGTTGTTGTTGGGAAGGATGCAAGGTCGTGGACTAAGGCTGCTGCCTCCACGCTCAGTTTTGACCAGCAGTGCAAACATTGTGAGAAGGAATCAATCAACCGTTCATTGTTGAACCTGCTCACGTACCCGTGGATAGAAGAAAAAGTGAAGCAAGGTGTTCTTGCTGTACATGGTGGTTATTATGACTTTGTTGAATGTACATTTGAGAAATGGACGCTCGATTATAAGGAAGGCAACTTGAAGGAGAAACATGGCAGAATTTCTGTCAAAAATCATTTGTTTTGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

312

Amino Acids

34.98

Weight (kDa)

8.05

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	127 - 279	1.4e-41	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
Acc16I	TGCGCA	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	1 cut(s)	14
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	4 cut(s)	469, 521, 532, 903
AfaI	GTAC	3 cut(s)	770, 813, 844
AfiI	CCNNNNNNNGG	3 cut(s)	101, 358, 643
AgsI	TTSAA	6 cut(s)	85, 195, 310, 757, 839, 886
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	4 cut(s)	112, 251, 573, 630
AluI	AGCT	4 cut(s)	112, 251, 573, 630
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	576
ApeKI	GCWGC	4 cut(s)	512, 573, 683, 686
ApoI	RAATTY	4 cut(s)	469, 521, 532, 903
AspLEI	GCGC	3 cut(s)	16, 370, 459
AspS9I	GGNCC	2 cut(s)	494, 930
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	494, 930
AxyI	CCTNAGG	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	4 cut(s)	499, 560, 670, 673
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	768
BisI	GCNGC	4 cut(s)	513, 574, 684, 687
BlsI	GCNGC	4 cut(s)	514, 575, 685, 688
Bme1390I	CCNGG	2 cut(s)	174, 438
Bme18I	GGWCC	2 cut(s)	494, 930
BmgT120I	GGNCC	2 cut(s)	494, 930
BmiI	GGNNCC	2 cut(s)	477, 496
BmrFI	CCNGG	2 cut(s)	174, 438
BmsI	GCATC	1 cut(s)	652
BoxI	GACNNNNGTC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	60, 173, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 358, 643
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	60, 173, 773
BseGI	GGATG	2 cut(s)	613, 667
BseLI	CCNNNNNNNGG	3 cut(s)	101, 358, 643
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	134, 513, 712
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	3 cut(s)	43, 46, 49
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	4 cut(s)	499, 560, 670, 673
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	101, 358, 643
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	585
Bsp1286I	GDGCHC	2 cut(s)	480, 595
Bsp1407I	TGTACA	2 cut(s)	811, 842
Bsp143I	GATC	2 cut(s)	210, 262
BspCNI	CTCAG	3 cut(s)	135, 512, 711
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	477, 496
BspMI	ACCTGC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	2 cut(s)	811, 842
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	60, 173, 773
BssMI	GATC	2 cut(s)	210, 262
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	184, 297, 746
BstAUI	TGTACA	2 cut(s)	811, 842
BstBAI	YACGTR	1 cut(s)	768
BstDEI	CTNAG	6 cut(s)	108, 143, 205, 499, 678, 698
BstDSI	CCRYGG	1 cut(s)	773
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	613, 667
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	3 cut(s)	16, 370, 459
BstKTI	GATC	2 cut(s)	213, 265
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	210, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 582
BstNI	CCWGG	1 cut(s)	174
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	172, 436
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	4 cut(s)	499, 560, 670, 673
Bsu36I	CCTNAGG	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	613, 667
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	1 cut(s)	719
BveI	ACCTGC	1 cut(s)	768
CaiI	CAGNNNCTG	1 cut(s)	576
CfoI	GCGC	3 cut(s)	16, 370, 459
Cfr13I	GGNCC	2 cut(s)	494, 930
CseI	GACGC	1 cut(s)	868
Csp6I	GTAC	3 cut(s)	769, 812, 843
CviAII	CATG	5 cut(s)	325, 379, 604, 815, 896
CviJI	RGCY	8 cut(s)	5, 112, 133, 191, 251, 573, 630, 683
CviKI_1	RGCY	8 cut(s)	5, 112, 133, 191, 251, 573, 630, 683
CviQI	GTAC	3 cut(s)	769, 812, 843
DdeI	CTNAG	6 cut(s)	108, 143, 205, 499, 678, 698
DpnI	GATC	2 cut(s)	212, 264
DpnII	GATC	2 cut(s)	210, 262
Eco47I	GGWCC	2 cut(s)	494, 930
Eco81I	CCTNAGG	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoRI	GAATTC	2 cut(s)	521, 532
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	328, 382, 607, 818, 899
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FatI	CATG	5 cut(s)	324, 378, 603, 814, 895
Fnu4HI	GCNGC	4 cut(s)	513, 574, 684, 687
FokI	GGATG	2 cut(s)	620, 674
Fsp4HI	GCNGC	4 cut(s)	513, 574, 684, 687
FspBI	CTAG	1 cut(s)	402
FspI	TGCGCA	1 cut(s)	458
GlaI	GCGC	3 cut(s)	15, 369, 458
GluI	GCNGC	4 cut(s)	513, 574, 684, 687
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	371
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	1 cut(s)	868
HhaI	GCGC	3 cut(s)	16, 370, 459
Hin1II	CATG	5 cut(s)	328, 382, 607, 818, 899
Hin6I	GCGC	3 cut(s)	14, 368, 457
HinP1I	GCGC	3 cut(s)	14, 368, 457
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	5 cut(s)	75, 200, 398, 429, 734
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	3 cut(s)	180, 494, 675
Hpy188I	TCNGA	5 cut(s)	64, 163, 267, 502, 540
Hpy188III	TCNNGA	4 cut(s)	120, 195, 302, 933
Hpy8I	GTNNAC	3 cut(s)	180, 494, 675
HpyAV	CCTTC	4 cut(s)	652, 724, 869, 880
HpyCH4III	ACNGT	3 cut(s)	184, 297, 746
HpyCH4IV	ACGT	1 cut(s)	767
HpyCH4V	TGCA	5 cut(s)	356, 395, 515, 665, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 582
HpyF3I	CTNAG	6 cut(s)	108, 143, 205, 499, 678, 698
HpySE526I	ACGT	1 cut(s)	767
Hsp92II	CATG	5 cut(s)	328, 382, 607, 818, 899
HspAI	GCGC	3 cut(s)	14, 368, 457
Kzo9I	GATC	2 cut(s)	210, 262
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	8 cut(s)	105, 159, 186, 224, 410, 450, 722, 773
Lsp1109I	GCAGC	4 cut(s)	499, 560, 670, 673
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	767
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	2 cut(s)	212, 264
MboI	GATC	2 cut(s)	210, 262
MboII	GAAGA	1 cut(s)	794
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	480, 595
MluCI	AATT	8 cut(s)	46, 166, 272, 469, 521, 532, 640, 903
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	186, 457
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	174, 438
MunI	CAATTG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	11, 582
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	210, 262
NlaIII	CATG	5 cut(s)	328, 382, 607, 818, 899
NlaIV	GGNNCC	2 cut(s)	477, 496
NmuCI	GTSAC	1 cut(s)	566
NsbI	TGCGCA	1 cut(s)	458
PctI	GAATGC	1 cut(s)	585
PfeI	GAWTC	4 cut(s)	75, 398, 429, 734
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	514, 575, 685, 688
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	768
PshAI	GACNNNNGTC	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	477, 496
PspPI	GGNCC	2 cut(s)	494, 930
PstNI	CAGNNNCTG	1 cut(s)	576
PvuII	CAGCTG	1 cut(s)	573
RsaI	GTAC	3 cut(s)	770, 813, 844
RsaNI	GTAC	3 cut(s)	769, 812, 843
SatI	GCNGC	4 cut(s)	513, 574, 684, 687
Sau3AI	GATC	2 cut(s)	210, 262
Sau96I	GGNCC	2 cut(s)	494, 930
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	174, 438
SduI	GDGCHC	2 cut(s)	480, 595
SfaNI	GCATC	1 cut(s)	652
SinI	GGWCC	2 cut(s)	494, 930
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	8 cut(s)	46, 166, 272, 469, 521, 532, 640, 903
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	172, 436
TaaI	ACNGT	3 cut(s)	184, 297, 746
TaiI	ACGT	1 cut(s)	770
TaqI	TCGA	2 cut(s)	546, 864
TasI	AATT	8 cut(s)	46, 166, 272, 469, 521, 532, 640, 903
TatI	WGTACW	2 cut(s)	811, 842
TfiI	GAWTC	4 cut(s)	75, 398, 429, 734
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	4 cut(s)	512, 573, 683, 686
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	4 cut(s)	302, 367, 627, 738
TspRI	CASTG	1 cut(s)	719
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	494, 930
XagI	CCTNNNNNAGG	1 cut(s)	356
XapI	RAATTY	4 cut(s)	469, 521, 532, 903
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.