Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

4499606 .. 4501436

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03920.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAACAACGGTTTCTCGACTTCAAAAAGCATAAATACATGGGAAACTTGGAACATTATCAAAATCTTGCAAAGGGTCAAGCGCCAAAGTTCATGGTCATCTCTTGTGCAGATTCTAGGGTATGCCCCTCGACCATTCTGGGATTTCAACCGGGAGAAGCATTTATAGTGCGCAACATTGCGAATTTGGTGCCCCCCCTTGAGAGTGGACCCTCAGAAACAAATGCTGCATTGGAATTTTCTGTGAATTTTCTGAAAATTGAAAACATATTGGTCGTTGGTCACAGCTGCTGTGGAGGCATTCGTGCTCTTATGGGCATGGATGATGAAGTTGATAAAAGTAGCTTTATCCAAAATTGGGTTGTTGTTGGGAAGGATGCAAGGTCGTGGACAAAAGCTGCTGCCTCCAAACTCAGTTTTGACCAGCAGTGCACGCATTGTGAGAAGGAATCAATCAACCGTTCATTGTTGAACCTGCTCACGTACCCATGGATAGAAGAAAAAGTGAAGAAAGGTGTTCTTGCTGTTCATGGTGGTTATTATGACTTTGTTGAATGTACATTTGAGAAATGGACGCTCGATTATAAGGAAGACAACTTGAAGGAGAAACATGGCAGAATTTCAGTTAAAAATCATTTGTTTTGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

217

Amino Acids

24.6

Weight (kDa)

8.41

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	190
AcsI	RAATTY	4 cut(s)	184, 236, 247, 618
AfaI	GTAC	2 cut(s)	485, 559
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	6 cut(s)	25, 149, 263, 472, 554, 601
AluBI	AGCT	3 cut(s)	288, 345, 398
AluI	AGCT	3 cut(s)	288, 345, 398
Alw21I	GWGCWC	2 cut(s)	310, 434
Alw44I	GTGCAC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	291
ApaLI	GTGCAC	1 cut(s)	430
ApeKI	GCWGC	4 cut(s)	227, 288, 398, 401
ApoI	RAATTY	4 cut(s)	184, 236, 247, 618
AspLEI	GCGC	2 cut(s)	85, 174
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	2 cut(s)	195, 434
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	310, 434
BbvI	GCAGC	4 cut(s)	214, 275, 385, 388
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	4 cut(s)	228, 289, 399, 402
BlsI	GCNGC	4 cut(s)	229, 290, 400, 403
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	192, 211
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	2 cut(s)	328, 382
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	228, 427
BseSI	GKGCMC	2 cut(s)	195, 434
BseXI	GCAGC	4 cut(s)	214, 275, 385, 388
BsgI	GTGCAG	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	310, 434
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	300
Bsp1286I	GDGCHC	3 cut(s)	195, 310, 434
Bsp1407I	TGTACA	1 cut(s)	557
Bsp19I	CCATGG	1 cut(s)	488
BspCNI	CTCAG	2 cut(s)	227, 426
BspLI	GGNNCC	2 cut(s)	192, 211
BspMI	ACCTGC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	12, 461
BstAUI	TGTACA	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	214, 413
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	328, 382
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 433
BstSCI	CCNGG	1 cut(s)	151
BstSLI	GKGCMC	2 cut(s)	195, 434
BstV1I	GCAGC	4 cut(s)	214, 275, 385, 388
BstV2I	GAAGAC	1 cut(s)	597
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	328, 382
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	434
CaiI	CAGNNNCTG	1 cut(s)	291
CfoI	GCGC	2 cut(s)	85, 174
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	484, 558
CviAII	CATG	6 cut(s)	40, 94, 319, 489, 530, 611
CviJI	RGCY	3 cut(s)	288, 345, 398
CviKI_1	RGCY	3 cut(s)	288, 345, 398
CviQI	GTAC	2 cut(s)	484, 558
DdeI	CTNAG	2 cut(s)	214, 413
Eco130I	CCWWGG	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	6 cut(s)	43, 97, 322, 492, 533, 614
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	6 cut(s)	39, 93, 318, 488, 529, 610
Fnu4HI	GCNGC	4 cut(s)	228, 289, 399, 402
FokI	GGATG	2 cut(s)	335, 389
Fsp4HI	GCNGC	4 cut(s)	228, 289, 399, 402
FspBI	CTAG	1 cut(s)	117
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	2 cut(s)	84, 173
GluI	GCNGC	4 cut(s)	228, 289, 399, 402
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	2 cut(s)	85, 174
Hin1II	CATG	6 cut(s)	43, 97, 322, 492, 533, 614
Hin6I	GCGC	2 cut(s)	83, 172
HinP1I	GCGC	2 cut(s)	83, 172
HinfI	GANTC	2 cut(s)	113, 449
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	209, 390, 432
Hpy188I	TCNGA	2 cut(s)	217, 255
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	3 cut(s)	209, 390, 432
HpyAV	CCTTC	3 cut(s)	367, 439, 595
HpyCH4III	ACNGT	2 cut(s)	12, 461
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	5 cut(s)	71, 110, 230, 380, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 433
HpyF3I	CTNAG	2 cut(s)	214, 413
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	6 cut(s)	43, 97, 322, 492, 533, 614
HspAI	GCGC	2 cut(s)	83, 172
LpnPI	CCDG	4 cut(s)	125, 165, 437, 488
Lsp1109I	GCAGC	4 cut(s)	214, 275, 385, 388
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	3 cut(s)	509, 520, 602
MhlI	GDGCHC	3 cut(s)	195, 310, 434
MluCI	AATT	6 cut(s)	184, 236, 247, 258, 355, 618
MnlI	CCTC	4 cut(s)	139, 223, 290, 415
MseI	TTAA	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	297, 433
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	488
NlaIII	CATG	6 cut(s)	43, 97, 322, 492, 533, 614
NlaIV	GGNNCC	2 cut(s)	192, 211
NmuCI	GTSAC	1 cut(s)	281
NsbI	TGCGCA	1 cut(s)	173
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	113, 449
PkrI	GCNGC	4 cut(s)	229, 290, 400, 403
Ppu21I	YACGTR	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	192, 211
PspPI	GGNCC	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	2 cut(s)	485, 559
RsaNI	GTAC	2 cut(s)	484, 558
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	4 cut(s)	228, 289, 399, 402
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	3 cut(s)	195, 310, 434
SetI	ASST	7 cut(s)	290, 347, 386, 400, 477, 485, 517
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	6 cut(s)	184, 236, 247, 258, 355, 618
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	12, 461
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	18, 131, 579
TasI	AATT	6 cut(s)	184, 236, 247, 258, 355, 618
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	113, 449
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	4 cut(s)	227, 288, 398, 401
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	17, 82, 342, 453, 518
TspRI	CASTG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	4 cut(s)	184, 236, 247, 618
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.