Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

39844593 .. 39847651

Gene Structure 3059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAATTCTGGCCCTGACCTCCTCCCTTTCAAAAGACTCGTACTCATTCCCGTTACATATTCAATCATCCACAATCTTTGGTTCTAAGCTCAAATCAGGGGAATTTCAGCAGCCCCGTTTCAGGTTATTCCGTAATTCCAACAGTTATCCAGGTTTGACCGTAAAGGCTTCCAGAGAGTCCTTAGGGCTGACTCAAGAACTTAAGAGCAACAAACTGGAGAGAGTAGTGGAAACTGAAGATGGTAGCGATTTGTTTGAAGATATGAAACATCGGTTTCTTAGCTTCAAAAAGCATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAAGCACCAAAGTTCTTGGTGATTGGTTGTGCAGATTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCAGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTAGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAATAGACAAAAGTAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTCAACCGTTCGTTGTTAAACCTACTTACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTTTCTGTACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACACTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAATCTCAGTTAAAAGTCATTTACTTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

305

Amino Acids

34.34

Weight (kDa)

8.55

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	120 - 273	1.8e-42	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AcsI	RAATTY	4 cut(s)	104, 448, 500, 511
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	4 cut(s)	44, 456, 792, 823
AfiI	CCNNNNNNNGG	2 cut(s)	123, 622
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	6 cut(s)	33, 65, 260, 289, 521, 865
AjnI	CCWGG	2 cut(s)	151, 415
AluBI	AGCT	7 cut(s)	91, 285, 552, 609, 676, 681, 912
AluI	AGCT	7 cut(s)	91, 285, 552, 609, 676, 681, 912
Alw21I	GWGCWC	1 cut(s)	574
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	4 cut(s)	112, 491, 662, 665
ApoI	RAATTY	4 cut(s)	104, 448, 500, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	13, 473
AsuHPI	GGTGA	2 cut(s)	373, 781
AvaII	GGWCC	1 cut(s)	473
AxyI	CCTNAGG	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	124, 478, 649, 652
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	153, 417
BfaI	CTAG	2 cut(s)	381, 497
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	4 cut(s)	113, 492, 663, 666
BlpI	GCTNAGC	1 cut(s)	677
BlsI	GCNGC	4 cut(s)	114, 493, 664, 667
Bme1390I	CCNGG	2 cut(s)	153, 417
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	13, 473
BmiI	GGNNCC	2 cut(s)	456, 475
BmrFI	CCNGG	2 cut(s)	153, 417
BmsI	GCATC	1 cut(s)	631
BpiI	GAAGAC	1 cut(s)	861
BpmI	CTGGAG	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	752
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 622
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	441, 698
BseBI	CCWGG	2 cut(s)	153, 417
BseDI	CCNNGG	1 cut(s)	752
BseGI	GGATG	2 cut(s)	68, 646
BseLI	CCNNNNNNNGG	2 cut(s)	123, 622
BseMI	GCAATG	2 cut(s)	441, 698
BseMII	CTCAG	3 cut(s)	492, 691, 900
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	4 cut(s)	124, 478, 649, 652
BsgI	GTGCAG	2 cut(s)	393, 477
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	123, 622
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	2 cut(s)	564, 780
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp1407I	TGTACA	2 cut(s)	790, 821
Bsp1720I	GCTNAGC	1 cut(s)	677
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	3 cut(s)	491, 690, 899
BspLI	GGNNCC	2 cut(s)	456, 475
BspT107I	GGYRCC	1 cut(s)	454
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	441, 698
BsrGI	TGTACA	2 cut(s)	790, 821
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	752
BssT1I	CCWWGG	1 cut(s)	752
Bst2UI	CCWGG	2 cut(s)	153, 417
Bst4CI	ACNGT	5 cut(s)	146, 163, 704, 725, 821
BstAFI	CTTAAG	1 cut(s)	203
BstAUI	TGTACA	2 cut(s)	790, 821
BstDEI	CTNAG	6 cut(s)	87, 184, 281, 478, 677, 886
BstF5I	GGATG	2 cut(s)	68, 646
BstHHI	GCGC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	153, 417
BstSCI	CCNGG	2 cut(s)	151, 415
BstV1I	GCAGC	4 cut(s)	124, 478, 649, 652
BstV2I	GAAGAC	1 cut(s)	861
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	68, 646
BtsIMutI	CAGTG	1 cut(s)	700
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	13, 473
Csp6I	GTAC	4 cut(s)	43, 455, 791, 822
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	1 cut(s)	794
CviQI	GTAC	4 cut(s)	43, 455, 791, 822
DdeI	CTNAG	6 cut(s)	87, 184, 281, 478, 677, 886
Eco130I	CCWWGG	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	258
Eco81I	CCTNAGG	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	151, 415
EcoT14I	CCWWGG	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	1 cut(s)	797
FaiI	YATR	9 cut(s)	60, 266, 297, 431, 533, 578, 584, 795, 807
FalI	AAGNNNNNCTT	4 cut(s)	665, 697, 768, 800
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	1 cut(s)	793
Fnu4HI	GCNGC	4 cut(s)	113, 492, 663, 666
FokI	GGATG	2 cut(s)	55, 653
Fsp4HI	GCNGC	4 cut(s)	113, 492, 663, 666
FspBI	CTAG	2 cut(s)	381, 497
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	4 cut(s)	113, 492, 663, 666
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	797
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	2 cut(s)	721, 817
HindII	GTYRAC	2 cut(s)	721, 817
HinfI	GANTC	7 cut(s)	38, 179, 193, 377, 408, 713, 882
HphI	GGTGA	2 cut(s)	373, 781
Hpy166II	GTNNAC	4 cut(s)	473, 654, 721, 817
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	4 cut(s)	174, 197, 305, 518
Hpy8I	GTNNAC	4 cut(s)	473, 654, 721, 817
HpyAV	CCTTC	2 cut(s)	631, 703
HpyCH4III	ACNGT	5 cut(s)	146, 163, 704, 725, 821
HpyCH4V	TGCA	6 cut(s)	335, 374, 446, 494, 644, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	6 cut(s)	87, 184, 281, 478, 677, 886
Hsp92II	CATG	1 cut(s)	797
HspAI	GCGC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	458
LmnI	GCTCC	1 cut(s)	909
Lsp1109I	GCAGC	4 cut(s)	124, 478, 649, 652
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	2 cut(s)	381, 497
MaeIII	GTNAC	2 cut(s)	54, 545
MboII	GAAGA	5 cut(s)	251, 272, 773, 784, 866
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	7 cut(s)	6, 104, 136, 448, 500, 511, 859
MlyI	GAGTC	3 cut(s)	32, 187, 188
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	31, 34, 403, 487, 554, 679
MseI	TTAA	3 cut(s)	204, 734, 891
MspA1I	CMGCKG	1 cut(s)	552
MspCI	CTTAAG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	153, 417
Mva1269I	GAATGC	2 cut(s)	564, 780
MvaI	CCWGG	2 cut(s)	153, 417
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	797
NlaIV	GGNNCC	2 cut(s)	456, 475
NmuCI	GTSAC	1 cut(s)	545
NsbI	TGCGCA	1 cut(s)	437
PctI	GAATGC	2 cut(s)	564, 780
PfeI	GAWTC	4 cut(s)	377, 408, 713, 882
PkrI	GCNGC	4 cut(s)	114, 493, 664, 667
PleI	GAGTC	3 cut(s)	32, 187, 187
PpsI	GAGTC	3 cut(s)	32, 187, 187
Psp6I	CCWGG	2 cut(s)	151, 415
PspGI	CCWGG	2 cut(s)	151, 415
PspN4I	GGNNCC	2 cut(s)	456, 475
PspPI	GGNCC	2 cut(s)	13, 473
PvuII	CAGCTG	1 cut(s)	552
RsaI	GTAC	4 cut(s)	44, 456, 792, 823
RsaNI	GTAC	4 cut(s)	43, 455, 791, 822
SaqAI	TTAA	3 cut(s)	204, 734, 891
SatI	GCNGC	4 cut(s)	113, 492, 663, 666
Sau96I	GGNCC	2 cut(s)	13, 473
SchI	GAGTC	3 cut(s)	32, 187, 188
ScrFI	CCNGG	2 cut(s)	153, 417
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	631
SinI	GGWCC	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	195, 203
SmoI	CTYRAG	2 cut(s)	195, 203
Sse9I	AATT	7 cut(s)	6, 104, 136, 448, 500, 511, 859
SspMI	CTAG	2 cut(s)	381, 497
StyD4I	CCNGG	2 cut(s)	151, 415
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	5 cut(s)	146, 163, 704, 725, 821
TaqI	TCGA	1 cut(s)	843
TasI	AATT	7 cut(s)	6, 104, 136, 448, 500, 511, 859
TatI	WGTACW	2 cut(s)	790, 821
TfiI	GAWTC	4 cut(s)	377, 408, 713, 882
Tru1I	TTAA	3 cut(s)	204, 734, 891
Tru9I	TTAA	3 cut(s)	204, 734, 891
TscAI	CASTG	1 cut(s)	707
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	4 cut(s)	112, 491, 662, 665
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	281, 599, 606
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	4 cut(s)	104, 448, 500, 511
XspI	CTAG	2 cut(s)	381, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.