Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

41327041 .. 41330283

Gene Structure 3243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAATTCTGGCCCCGACCTCCTCCTCCCTTTCTAAAGACTCGTACTCATTCTCGTTACATATTCAATCATCCACAATCTTTGGTTCTAAGCTCAAATCAGGGGAATTTCAGCAGACCCGTTTCAGGTTATTCAGTAATTCCAATTATCCAGGTTTGACCATAAAGGCTTCCAGAGAGTCCGTAGGGCTGACTCAAGAACTTAAGAGCAACAAACTGGAGAGAGTAGTGGAAACTGAAGATGGGAGCGATTTGTTTGAAGATATGAAACATCGGTTTCTTAGCTTCAAAAAGCATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAGGCACCAAAGTTCTTGGTGATTGGTTGTGCAGACTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCAGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTAGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAGTAGACAAAAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTCAACCGTTCGTTGTTAAACCTACTCACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTTTCTGTACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACACTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAATCTCTGTTAAAAGTCATTTACTTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

303

Amino Acids

34.14

Weight (kDa)

8.36

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	120 - 272	2.5e-42	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
Acc16I	TGCGCA	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	346, 454
AccI	GTMKAC	1 cut(s)	597
AcsI	RAATTY	4 cut(s)	107, 448, 500, 511
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	4 cut(s)	47, 456, 789, 820
AfiI	CCNNNNNNNGG	2 cut(s)	126, 619
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	68, 260, 289, 521, 862
AjnI	CCWGG	2 cut(s)	151, 415
AluBI	AGCT	7 cut(s)	94, 285, 552, 606, 673, 678, 909
AluI	AGCT	7 cut(s)	94, 285, 552, 606, 673, 678, 909
Alw21I	GWGCWC	1 cut(s)	574
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	3 cut(s)	491, 659, 662
ApoI	RAATTY	4 cut(s)	107, 448, 500, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	13, 473
AsuHPI	GGTGA	2 cut(s)	373, 778
AvaII	GGWCC	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	346, 454
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	478, 646, 649
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	153, 417
BfaI	CTAG	2 cut(s)	381, 497
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	492, 660, 663
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	3 cut(s)	493, 661, 664
Bme1390I	CCNGG	2 cut(s)	153, 417
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	13, 473
BmiI	GGNNCC	4 cut(s)	15, 348, 456, 475
BmrFI	CCNGG	2 cut(s)	153, 417
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	858
BpmI	CTGGAG	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 619
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	2 cut(s)	441, 695
BseBI	CCWGG	2 cut(s)	153, 417
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	2 cut(s)	71, 643
BseLI	CCNNNNNNNGG	2 cut(s)	126, 619
BseMI	GCAATG	2 cut(s)	441, 695
BseMII	CTCAG	2 cut(s)	492, 688
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	13, 16
BseXI	GCAGC	3 cut(s)	478, 646, 649
BsgI	GTGCAG	2 cut(s)	393, 477
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	2 cut(s)	346, 454
BsiHKAI	GWGCWC	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	126, 619
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	2 cut(s)	564, 777
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp1407I	TGTACA	2 cut(s)	787, 818
Bsp1720I	GCTNAGC	1 cut(s)	674
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	491, 687
BspLI	GGNNCC	4 cut(s)	15, 348, 456, 475
BspT107I	GGYRCC	2 cut(s)	346, 454
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	441, 695
BsrGI	TGTACA	2 cut(s)	787, 818
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	2 cut(s)	153, 417
Bst4CI	ACNGT	3 cut(s)	701, 722, 818
BstAFI	CTTAAG	1 cut(s)	203
BstAUI	TGTACA	2 cut(s)	787, 818
BstDEI	CTNAG	4 cut(s)	90, 281, 478, 674
BstF5I	GGATG	2 cut(s)	71, 643
BstHHI	GCGC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	153, 417
BstSCI	CCNGG	2 cut(s)	151, 415
BstV1I	GCAGC	3 cut(s)	478, 646, 649
BstV2I	GAAGAC	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	71, 643
BtsIMutI	CAGTG	1 cut(s)	697
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	13, 473
Csp6I	GTAC	4 cut(s)	46, 455, 788, 819
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	791
CviQI	GTAC	4 cut(s)	46, 455, 788, 819
DdeI	CTNAG	4 cut(s)	90, 281, 478, 674
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	151, 415
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	1 cut(s)	794
FalI	AAGNNNNNCTT	4 cut(s)	662, 694, 765, 797
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	3 cut(s)	492, 660, 663
FokI	GGATG	2 cut(s)	58, 650
Fsp4HI	GCNGC	3 cut(s)	492, 660, 663
FspBI	CTAG	2 cut(s)	381, 497
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	3 cut(s)	492, 660, 663
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	794
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	2 cut(s)	718, 814
HindII	GTYRAC	2 cut(s)	718, 814
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	7 cut(s)	41, 179, 193, 377, 408, 710, 879
HphI	GGTGA	2 cut(s)	373, 778
Hpy166II	GTNNAC	5 cut(s)	473, 598, 651, 718, 814
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	4 cut(s)	174, 197, 305, 518
Hpy8I	GTNNAC	5 cut(s)	473, 598, 651, 718, 814
HpyAV	CCTTC	2 cut(s)	628, 700
HpyCH4III	ACNGT	3 cut(s)	701, 722, 818
HpyCH4V	TGCA	6 cut(s)	335, 374, 446, 494, 641, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	90, 281, 478, 674
Hsp92II	CATG	1 cut(s)	794
HspAI	GCGC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	246, 906
Lsp1109I	GCAGC	3 cut(s)	478, 646, 649
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	381, 497
MaeIII	GTNAC	2 cut(s)	57, 545
MboII	GAAGA	5 cut(s)	251, 272, 770, 781, 863
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	8 cut(s)	6, 107, 139, 145, 448, 500, 511, 856
MlyI	GAGTC	4 cut(s)	35, 187, 188, 371
MnlI	CCTC	7 cut(s)	31, 34, 37, 403, 487, 554, 676
MseI	TTAA	3 cut(s)	204, 731, 888
MspA1I	CMGCKG	1 cut(s)	552
MspCI	CTTAAG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	153, 417
Mva1269I	GAATGC	2 cut(s)	564, 777
MvaI	CCWGG	2 cut(s)	153, 417
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	4 cut(s)	15, 348, 456, 475
NmuCI	GTSAC	1 cut(s)	545
NsbI	TGCGCA	1 cut(s)	437
PctI	GAATGC	2 cut(s)	564, 777
PfeI	GAWTC	3 cut(s)	408, 710, 879
PkrI	GCNGC	3 cut(s)	493, 661, 664
PleI	GAGTC	4 cut(s)	35, 187, 187, 371
PpsI	GAGTC	4 cut(s)	35, 187, 187, 371
Psp6I	CCWGG	2 cut(s)	151, 415
PspGI	CCWGG	2 cut(s)	151, 415
PspN4I	GGNNCC	4 cut(s)	15, 348, 456, 475
PspPI	GGNCC	2 cut(s)	13, 473
PvuII	CAGCTG	1 cut(s)	552
RsaI	GTAC	4 cut(s)	47, 456, 789, 820
RsaNI	GTAC	4 cut(s)	46, 455, 788, 819
SaqAI	TTAA	3 cut(s)	204, 731, 888
SatI	GCNGC	3 cut(s)	492, 660, 663
Sau96I	GGNCC	2 cut(s)	13, 473
SchI	GAGTC	4 cut(s)	35, 187, 188, 371
ScrFI	CCNGG	2 cut(s)	153, 417
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	628
SinI	GGWCC	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	195, 203
SmoI	CTYRAG	2 cut(s)	195, 203
Sse9I	AATT	8 cut(s)	6, 107, 139, 145, 448, 500, 511, 856
SspMI	CTAG	2 cut(s)	381, 497
StyD4I	CCNGG	2 cut(s)	151, 415
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	3 cut(s)	701, 722, 818
TaqI	TCGA	1 cut(s)	840
TasI	AATT	8 cut(s)	6, 107, 139, 145, 448, 500, 511, 856
TatI	WGTACW	2 cut(s)	787, 818
TfiI	GAWTC	3 cut(s)	408, 710, 879
Tru1I	TTAA	3 cut(s)	204, 731, 888
Tru9I	TTAA	3 cut(s)	204, 731, 888
TscAI	CASTG	1 cut(s)	704
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	3 cut(s)	491, 659, 662
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	281, 599, 606
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	704
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	4 cut(s)	107, 448, 500, 511
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	2 cut(s)	381, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.