Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

43383892 .. 43387238

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G530700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTCTTCCCAATCCGCTCAAAAGCTCGTCGGATTCTTTCAACAATGGCAGCTGTAAGACCTTCCTCAACCTGTAGCAATTACAGAAGAAAATCCTCTGCCTCAAACCTGACAAATTCTGCAGAAGTTGAACAAGGAACCCATGTAGAATTACTGCCTTCAGTCAAAAGACAACCAGTTAGAAGGCTGGAGGCTTCAAGTGATTCCATGGAACTTGCCCATGAATGTTCAAATTGTGAAGGAGAAAATGTGTCAAAAGCTAATAATGGGCCTGACTTGTTTGGTGAGATGAAAGAGAGGTTTCTGAGTTTTAAGAAGCACAAATTTTTGAAAGAGTCAGAGCATTTCCAAACTCTAGCTCAAGCTCAAGCACCCAAGTTCATGGTGATTGCTTGTGCAGACTCTAGGGTATGTCCCTCTAACATCCTAGGCTTTCAACCTGGAGAAGCATTCATGATTAGAAATGTAGCAAACCTTGTTCCCCCATTTGAGAATGAAGCATCAGAAACTAATGCTGCCCTTGAGTTTGCAGTAAATACTCTTGAAGTTAAGAATATATTAGTCATTGGCCACAGTAGCTGTGCAGGAATTGAGACCCTCATGAGAATGCAAGATGATGGTGATTCAAGTAGCTTAACTCATAGTTGGGTTATCAATGCCAAAGTTGCCAAACTAAGAACAAAAGCTGTTGCACCACACCTTAGCTTTGATCAGCAATGCAGACACTGTGAGAAGGAATCAATCAATAGTTCATTATTGAATTTACGGACATACCCATGGATAGAAGACAGAGCAAAGAAAGAGATGCTCTCTCTTCATGGAGGATATTATGATTTCTTGAGGTGTACGTTTGAGAAATGGACTCTTGATATGAATGGTATCAGACCTGTTGGAGGAGGCAGATACTTGGACAAAGATCGAGAACTTTGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

312

Amino Acids

34.92

Weight (kDa)

8.33

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	3 cut(s)	115, 323, 760
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	847
AfiI	CCNNNNNNNGG	1 cut(s)	893
AgsI	TTSAA	9 cut(s)	42, 131, 198, 231, 331, 437, 545, 627, 760
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	9 cut(s)	26, 53, 260, 359, 365, 579, 633, 686, 705
AluI	AGCT	9 cut(s)	26, 53, 260, 359, 365, 579, 633, 686, 705
Alw26I	GTCTC	1 cut(s)	587
AlwNI	CAGNNNCTG	2 cut(s)	579, 726
AoxI	GGCC	2 cut(s)	269, 568
ApeKI	GCWGC	2 cut(s)	50, 515
ApoI	RAATTY	3 cut(s)	115, 323, 760
AspA2I	CCTAGG	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	296, 397, 632
AvrII	CCTAGG	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	62, 502
BccI	CCATC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	3 cut(s)	356, 405, 428
BfmI	CTRYAG	2 cut(s)	73, 120
BisI	GCNGC	2 cut(s)	51, 516
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	2 cut(s)	52, 517
Bme1390I	CCNGG	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	509, 795
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
BpmI	CTGGAG	2 cut(s)	209, 462
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	4 cut(s)	345, 351, 542, 859
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	207, 427, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	207, 427, 776
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	909
BseXI	GCAGC	2 cut(s)	62, 502
BsgI	GTGCAG	2 cut(s)	417, 603
BshFI	GGCC	2 cut(s)	271, 570
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	893
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	2 cut(s)	449, 612
BsnI	GGCC	2 cut(s)	271, 570
Bso31I	GGTCTC	1 cut(s)	587
Bsp143I	GATC	2 cut(s)	709, 916
Bsp19I	CCATGG	2 cut(s)	207, 776
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	271, 570
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	2 cut(s)	453, 600
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	587
BsrBI	CCGCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	207, 427, 776
BssMI	GATC	2 cut(s)	709, 916
BssT1I	CCWWGG	3 cut(s)	207, 427, 776
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	575, 728
Bst6I	CTCTTC	1 cut(s)	819
BstDEI	CTNAG	3 cut(s)	305, 674, 701
BstDSI	CCRYGG	2 cut(s)	207, 776
BstENI	CCTNNNNNAGG	1 cut(s)	891
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	2 cut(s)	712, 919
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	2 cut(s)	709, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	576, 665
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	2 cut(s)	73, 120
BstV1I	GCAGC	2 cut(s)	62, 502
BstV2I	GAAGAC	1 cut(s)	792
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	271, 570
BtgI	CCRYGG	2 cut(s)	207, 776
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	724
CaiI	CAGNNNCTG	2 cut(s)	579, 726
CciI	TCATGA	2 cut(s)	453, 600
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	846
CviAII	CATG	8 cut(s)	143, 208, 221, 382, 454, 601, 777, 818
CviQI	GTAC	1 cut(s)	846
DdeI	CTNAG	3 cut(s)	305, 674, 701
DpnI	GATC	2 cut(s)	711, 918
DpnII	GATC	2 cut(s)	709, 916
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco130I	CCWWGG	3 cut(s)	207, 427, 776
Eco31I	GGTCTC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	891
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	3 cut(s)	207, 427, 776
ErhI	CCWWGG	3 cut(s)	207, 427, 776
FaeI	CATG	8 cut(s)	146, 211, 224, 385, 457, 604, 780, 821
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	8 cut(s)	142, 207, 220, 381, 453, 600, 776, 817
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	51, 516
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	51, 516
FspBI	CTAG	3 cut(s)	356, 405, 428
GluI	GCNGC	2 cut(s)	51, 516
GsuI	CTGGAG	2 cut(s)	209, 462
HaeIII	GGCC	2 cut(s)	271, 570
Hin1II	CATG	8 cut(s)	146, 211, 224, 385, 457, 604, 780, 821
HinfI	GANTC	7 cut(s)	34, 203, 335, 401, 623, 737, 862
HphI	GGTGA	3 cut(s)	296, 397, 632
Hpy166II	GTNNAC	1 cut(s)	846
Hpy188I	TCNGA	5 cut(s)	33, 306, 340, 505, 884
Hpy188III	TCNNGA	6 cut(s)	454, 542, 601, 838, 866, 920
Hpy8I	GTNNAC	1 cut(s)	846
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	5 cut(s)	72, 168, 177, 233, 727
HpyCH4III	ACNGT	2 cut(s)	575, 728
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	7 cut(s)	122, 398, 530, 584, 610, 692, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	576, 665
HpyF3I	CTNAG	3 cut(s)	305, 674, 701
HpySE526I	ACGT	1 cut(s)	848
Hsp92II	CATG	8 cut(s)	146, 211, 224, 385, 457, 604, 780, 821
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	709, 916
LpnPI	CCDG	9 cut(s)	85, 122, 173, 189, 285, 426, 453, 570, 900
Lsp1109I	GCAGC	2 cut(s)	62, 502
LweI	GCATC	2 cut(s)	509, 795
MaeI	CTAG	3 cut(s)	356, 405, 428
MaeII	ACGT	1 cut(s)	848
MalI	GATC	2 cut(s)	711, 918
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	2 cut(s)	709, 916
MboII	GAAGA	3 cut(s)	99, 797, 806
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	7 cut(s)	79, 115, 149, 232, 323, 588, 760
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	3 cut(s)	344, 395, 856
MmeI	TCCRAC	2 cut(s)	11, 871
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	3 cut(s)	312, 549, 635
MslI	CAYNNNNRTG	2 cut(s)	605, 775
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	2 cut(s)	449, 612
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	576, 665
NcoI	CCATGG	2 cut(s)	207, 776
NdeII	GATC	2 cut(s)	709, 916
NlaIII	CATG	8 cut(s)	146, 211, 224, 385, 457, 604, 780, 821
NlaIV	GGNNCC	1 cut(s)	139
PagI	TCATGA	2 cut(s)	453, 600
PctI	GAATGC	2 cut(s)	449, 612
PfeI	GAWTC	4 cut(s)	34, 203, 623, 737
PkrI	GCNGC	2 cut(s)	52, 517
PleI	GAGTC	3 cut(s)	343, 395, 856
PpsI	GAGTC	3 cut(s)	343, 395, 856
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	2 cut(s)	579, 726
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	847
RsaNI	GTAC	1 cut(s)	846
RseI	CAYNNNNRTG	2 cut(s)	605, 775
SaqAI	TTAA	3 cut(s)	312, 549, 635
SatI	GCNGC	2 cut(s)	51, 516
Sau3AI	GATC	2 cut(s)	709, 916
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	3 cut(s)	344, 395, 856
ScrFI	CCNGG	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	509, 795
SfcI	CTRYAG	2 cut(s)	73, 120
SmiMI	CAYNNNNRTG	2 cut(s)	605, 775
SmlI	CTYRAG	4 cut(s)	360, 366, 521, 838
SmoI	CTYRAG	4 cut(s)	360, 366, 521, 838
Sse9I	AATT	7 cut(s)	79, 115, 149, 232, 323, 588, 760
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	3 cut(s)	356, 405, 428
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	3 cut(s)	207, 427, 776
TaaI	ACNGT	2 cut(s)	575, 728
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	1 cut(s)	919
TasI	AATT	7 cut(s)	79, 115, 149, 232, 323, 588, 760
TfiI	GAWTC	4 cut(s)	34, 203, 623, 737
Tru1I	TTAA	3 cut(s)	312, 549, 635
Tru9I	TTAA	3 cut(s)	312, 549, 635
TscAI	CASTG	1 cut(s)	731
TseI	GCWGC	2 cut(s)	50, 515
TspDTI	ATGAA	8 cut(s)	237, 305, 370, 442, 510, 741, 806, 887
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	891
XapI	RAATTY	3 cut(s)	115, 323, 760
XmaJI	CCTAGG	1 cut(s)	427
XspI	CTAG	3 cut(s)	356, 405, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.