Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

25359592 .. 25362329

Gene Structure 2738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1196500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTGAAGGCGGGAAGAGAGATGGTGTGGCCAATCCCCTCAAAATTCGCTCGTTGGATGATTCCAGCACTGGTTTGTAGAGACTCGTTTGGCTGCTGCTCACTCTTTTCTGGTTTAACCAATTCCTCTCTAGCTCAAATTCACAGAAAATCATCTTTTCCAAACAAGACAAATTCTGCACAAGTTGAAGGCATCCCTGTCGAATTTCCGCCTTCGATCAAAAACAACCCAGTTCTAAGGCCGGAGGCATCAAATGATTCCGAGGATCTTGCTCGTGAATGTACAAAATTTAAAGTAGAAAATGTATCGAAAGCCAAGGATGGGATGGACTCGTTTGTAGCGATGAAAGAGAGGTTTCTGAGTTTTAAAAAGCAAAAATTTTTGAAAGAGTCAGAGCATTTCCAAACCCTAGCTCAAGTACAAGCACCCAAGTTCATGGTGATTGCTTGTGCAGACTCTAGGGTTTGTCCCTCTAATATCCTAGGGTTTCAACCAGGGGAAGCTTTCATGGTTAGAAATGTAGCAAACCTTGTCCCCCCATTTGAGTATGGAACATCAGAAACTAATGCCGCCCTTGAGTTTGCAGTAAATACTCTTCAAGTTGAGAATATATTAGTCATTGGCCACAGTAGCTGTGCAGGAATTCAGACCCTATTGAGAATGCAAGATGACGGTGATTCGAGTAGCTTTACTCAAAGTTGGGTTAACAACGCGAAAATCGCCAAACTAAGAACAAAATCTATTGCACAGCACCTCAGCTTTGAACAACAGTGTAGGCACTGTGAGAAGGAATCGATCAATCGTTCATTGTTGAATCTTCGGACGTACCCATGGATAGAAAACAAAGCAAAGAAAGAGTTGATCTGTCTACATGGAGGATATTACGATTTTTCGAGTTGTACATTTGAGAAATGGAGCCTTGATATAAATGGCAGCAGCAGCTTTGTAGGAGGCAGATACTTGATCAAAGATGAAGCACTTTGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

330

Amino Acids

37.01

Weight (kDa)

8.7

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	146 - 299	4e-40	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	868
AccII	CGCG	1 cut(s)	713
AciI	CCGC	3 cut(s)	11, 209, 570
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	29, 622
AcsI	RAATTY	7 cut(s)	44, 138, 172, 203, 287, 377, 642
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	4 cut(s)	283, 420, 827, 901
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	6 cut(s)	188, 385, 491, 599, 764, 814
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	7 cut(s)	134, 413, 503, 633, 687, 759, 942
AluI	AGCT	7 cut(s)	134, 413, 503, 633, 687, 759, 942
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	633
AoxI	GGCC	3 cut(s)	29, 239, 622
ApeKI	GCWGC	5 cut(s)	93, 96, 933, 936, 939
ApoI	RAATTY	7 cut(s)	44, 138, 172, 203, 287, 377, 642
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	987
AsuHPI	GGTGA	2 cut(s)	451, 686
AvrII	CCTAGG	1 cut(s)	481
BalI	TGGCCA	2 cut(s)	31, 624
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
BauI	CACGAG	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	755
BbvI	GCAGC	5 cut(s)	80, 83, 945, 948, 951
BccI	CCATC	3 cut(s)	16, 314, 319
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 251, 285
BciT130I	CCWGG	1 cut(s)	495
BclI	TGATCA	1 cut(s)	963
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	4 cut(s)	131, 410, 459, 482
BfoI	RGCGCY	1 cut(s)	988
BisI	GCNGC	6 cut(s)	94, 97, 570, 934, 937, 940
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	6 cut(s)	95, 98, 571, 935, 938, 941
Bme1390I	CCNGG	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	917
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	201, 257
BmuI	ACTGGG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	755
BpuEI	CTTGAG	2 cut(s)	399, 596
Bsa29I	ATCGAT	1 cut(s)	794
BsaJI	CCNNGG	5 cut(s)	261, 315, 481, 494, 830
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	75, 230
BseBI	CCWGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	794
BseDI	CCNNGG	5 cut(s)	261, 315, 481, 494, 830
BseGI	GGATG	4 cut(s)	63, 192, 325, 330
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	350, 769
BseNI	ACTGG	2 cut(s)	75, 230
BseXI	GCAGC	5 cut(s)	80, 83, 945, 948, 951
BsgI	GTGCAG	3 cut(s)	162, 471, 657
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	3 cut(s)	31, 241, 624
BshVI	ATCGAT	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	453, 518
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	453, 518
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	3 cut(s)	31, 241, 624
Bsp1407I	TGTACA	2 cut(s)	281, 899
Bsp143I	GATC	5 cut(s)	216, 265, 795, 861, 963
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	3 cut(s)	11, 209, 570
BspANI	GGCC	3 cut(s)	31, 241, 624
BspCNI	CTCAG	2 cut(s)	351, 768
BspDI	ATCGAT	1 cut(s)	794
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	1 cut(s)	917
BspPI	GGATC	1 cut(s)	273
BsrGI	TGTACA	2 cut(s)	281, 899
BsrI	ACTGG	2 cut(s)	75, 230
BssECI	CCNNGG	5 cut(s)	261, 315, 481, 494, 830
BssMI	GATC	5 cut(s)	216, 265, 795, 861, 963
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	3 cut(s)	315, 481, 830
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	4 cut(s)	629, 674, 771, 782
Bst6I	CTCTTC	2 cut(s)	10, 600
BstAUI	TGTACA	2 cut(s)	281, 899
BstDEI	CTNAG	4 cut(s)	236, 359, 728, 755
BstDSI	CCRYGG	1 cut(s)	830
BstF5I	GGATG	4 cut(s)	63, 192, 325, 330
BstFNI	CGCG	1 cut(s)	713
BstH2I	RGCGCY	1 cut(s)	988
BstHHI	GCGC	1 cut(s)	987
BstKTI	GATC	5 cut(s)	219, 268, 798, 864, 966
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	5 cut(s)	216, 265, 795, 861, 963
BstMWI	GCNNNNNNNGC	3 cut(s)	630, 719, 939
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	5 cut(s)	80, 83, 945, 948, 951
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	31, 241, 624
BsuTUI	ATCGAT	1 cut(s)	794
BtgI	CCRYGG	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	4 cut(s)	63, 192, 325, 330
BtsIMutI	CAGTG	3 cut(s)	68, 776, 778
CaiI	CAGNNNCTG	1 cut(s)	633
CfoI	GCGC	1 cut(s)	987
ClaI	ATCGAT	1 cut(s)	794
Csp6I	GTAC	4 cut(s)	282, 419, 826, 900
CviAII	CATG	4 cut(s)	436, 508, 831, 872
CviQI	GTAC	4 cut(s)	282, 419, 826, 900
DdeI	CTNAG	4 cut(s)	236, 359, 728, 755
DpnI	GATC	5 cut(s)	218, 267, 797, 863, 965
DpnII	GATC	5 cut(s)	216, 265, 795, 861, 963
DraI	TTTAAA	2 cut(s)	292, 367
EaeI	YGGCCR	2 cut(s)	29, 622
Eam1104I	CTCTTC	2 cut(s)	10, 600
EarI	CTCTTC	2 cut(s)	10, 600
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	3 cut(s)	315, 481, 830
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	3 cut(s)	315, 481, 830
ErhI	CCWWGG	3 cut(s)	315, 481, 830
FaeI	CATG	4 cut(s)	439, 511, 834, 875
FaiI	YATR	7 cut(s)	437, 509, 549, 611, 832, 873, 926
FaqI	GGGAC	2 cut(s)	453, 518
FatI	CATG	4 cut(s)	435, 507, 830, 871
FauI	CCCGC	1 cut(s)	4
FbaI	TGATCA	1 cut(s)	963
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	6 cut(s)	94, 97, 570, 934, 937, 940
FokI	GGATG	4 cut(s)	70, 179, 332, 337
Fsp4HI	GCNGC	6 cut(s)	94, 97, 570, 934, 937, 940
FspBI	CTAG	4 cut(s)	131, 410, 459, 482
GlaI	GCGC	1 cut(s)	986
GluI	GCNGC	6 cut(s)	94, 97, 570, 934, 937, 940
HaeII	RGCGCY	1 cut(s)	988
HaeIII	GGCC	3 cut(s)	31, 241, 624
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	987
Hin1II	CATG	4 cut(s)	439, 511, 834, 875
Hin6I	GCGC	1 cut(s)	985
HinP1I	GCGC	1 cut(s)	985
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	9 cut(s)	61, 83, 257, 329, 389, 455, 677, 791, 814
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	451, 686
Hpy166II	GTNNAC	2 cut(s)	706, 869
Hpy188I	TCNGA	6 cut(s)	262, 360, 394, 559, 648, 822
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	706, 869
HpyAV	CCTTC	3 cut(s)	182, 222, 781
HpyCH4III	ACNGT	4 cut(s)	629, 674, 771, 782
HpyCH4IV	ACGT	1 cut(s)	824
HpyCH4V	TGCA	6 cut(s)	179, 452, 584, 638, 664, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	630, 719, 939
HpyF3I	CTNAG	4 cut(s)	236, 359, 728, 755
HpySE526I	ACGT	1 cut(s)	824
Hsp92II	CATG	4 cut(s)	439, 511, 834, 875
HspAI	GCGC	1 cut(s)	985
Ksp22I	TGATCA	1 cut(s)	963
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	5 cut(s)	216, 265, 795, 861, 963
LmnI	GCTCC	1 cut(s)	915
LpnPI	CCDG	9 cut(s)	56, 78, 96, 210, 243, 255, 480, 507, 624
Lsp1109I	GCAGC	5 cut(s)	80, 83, 945, 948, 951
LweI	GCATC	2 cut(s)	201, 257
MaeI	CTAG	4 cut(s)	131, 410, 459, 482
MaeII	ACGT	1 cut(s)	824
MalI	GATC	5 cut(s)	218, 267, 797, 863, 965
MboI	GATC	5 cut(s)	216, 265, 795, 861, 963
MboII	GAAGA	3 cut(s)	27, 587, 809
MflI	RGATCY	1 cut(s)	265
MlsI	TGGCCA	2 cut(s)	31, 624
MluCI	AATT	8 cut(s)	44, 121, 138, 172, 203, 287, 377, 642
MluNI	TGGCCA	2 cut(s)	31, 624
MlyI	GAGTC	4 cut(s)	77, 323, 398, 449
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	49, 136, 238, 256, 345, 481, 764, 869, 944
Mox20I	TGGCCA	2 cut(s)	31, 624
MscI	TGGCCA	2 cut(s)	31, 624
MseI	TTAA	4 cut(s)	116, 291, 366, 705
Msp20I	TGGCCA	2 cut(s)	31, 624
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	3 cut(s)	630, 719, 939
NcoI	CCATGG	1 cut(s)	830
NdeII	GATC	5 cut(s)	216, 265, 795, 861, 963
NlaIII	CATG	4 cut(s)	439, 511, 834, 875
NlaIV	GGNNCC	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PctI	GAATGC	1 cut(s)	666
PfeI	GAWTC	5 cut(s)	61, 257, 677, 791, 814
PkrI	GCNGC	6 cut(s)	95, 98, 571, 935, 938, 941
PleI	GAGTC	4 cut(s)	77, 323, 397, 449
PpsI	GAGTC	4 cut(s)	77, 323, 397, 449
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	917
PstNI	CAGNNNCTG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	4 cut(s)	283, 420, 827, 901
RsaNI	GTAC	4 cut(s)	282, 419, 826, 900
SaqAI	TTAA	4 cut(s)	116, 291, 366, 705
SatI	GCNGC	6 cut(s)	94, 97, 570, 934, 937, 940
Sau3AI	GATC	5 cut(s)	216, 265, 795, 861, 963
SchI	GAGTC	4 cut(s)	77, 323, 398, 449
ScrFI	CCNGG	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	201, 257
SmlI	CTYRAG	2 cut(s)	414, 575
SmoI	CTYRAG	2 cut(s)	414, 575
Sse9I	AATT	8 cut(s)	44, 121, 138, 172, 203, 287, 377, 642
SsiI	CCGC	3 cut(s)	11, 209, 570
SspMI	CTAG	4 cut(s)	131, 410, 459, 482
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	3 cut(s)	315, 481, 830
TaaI	ACNGT	4 cut(s)	629, 674, 771, 782
TaiI	ACGT	1 cut(s)	827
TaqI	TCGA	6 cut(s)	201, 215, 308, 680, 794, 893
TasI	AATT	8 cut(s)	44, 121, 138, 172, 203, 287, 377, 642
TatI	WGTACW	3 cut(s)	281, 418, 899
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	5 cut(s)	61, 257, 677, 791, 814
Tru1I	TTAA	4 cut(s)	116, 291, 366, 705
Tru9I	TTAA	4 cut(s)	116, 291, 366, 705
TscAI	CASTG	3 cut(s)	75, 776, 785
TseI	GCWGC	5 cut(s)	93, 96, 933, 936, 939
TspDTI	ATGAA	5 cut(s)	359, 424, 496, 795, 987
TspRI	CASTG	3 cut(s)	75, 776, 785
XapI	RAATTY	7 cut(s)	44, 138, 172, 203, 287, 377, 642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	868
XspI	CTAG	4 cut(s)	131, 410, 459, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.