Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

28550528 .. 28554103

Gene Structure 3576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGCCTCTCTCTCTTTCTCTCTTCCATGGCAATTCTGGCCCCGACCTCCTCCTCCCTTTCAAAAGACTCGTCGTACTCATTCTCGTTACATATTCAATCATCCACAATCTTTGGTTCTAAGCTCAAATCAGGGGAATTTCAGCAGACCCGTTTCAGGTTTTTCAGTAATTCCAACAGTTATCCAGGTTTGACCATAAAGGCTTCCAGAGAGTCCTTAGGGCTGACTCAAGAACTTAAGAGCAACAAACTGGAGAGAGCAGTGGAAACTGAAGATGGGAGCGATTTGTTTGAAGATATGAAACATCGGTTTCTTAGCTTCAAAAAGCATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAAGCACCAAAGTTCTTGGTGATTGGTTGTGCAGATTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCAGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTAGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAATAGACAAAAGTAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTCAACCGTTCGTTGTTAAACCTACTCACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTTTCTGTACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACACTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAATCTCAGTTAAAAGTCATTTACTTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

315

Amino Acids

35.41

Weight (kDa)

8.36

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	131 - 284	1.9e-42	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	470
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	487
AcsI	RAATTY	4 cut(s)	137, 481, 533, 544
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	4 cut(s)	77, 489, 825, 856
AfiI	CCNNNNNNNGG	2 cut(s)	156, 655
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	6 cut(s)	63, 98, 293, 322, 554, 898
AjnI	CCWGG	2 cut(s)	184, 448
AluBI	AGCT	7 cut(s)	124, 318, 585, 642, 709, 714, 945
AluI	AGCT	7 cut(s)	124, 318, 585, 642, 709, 714, 945
Alw21I	GWGCWC	1 cut(s)	607
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	524, 695, 698
ApoI	RAATTY	4 cut(s)	137, 481, 533, 544
ArsI	GACNNNNNNTTYG	4 cut(s)	56, 88, 842, 874
Asp718I	GGTACC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	40, 506
AsuHPI	GGTGA	2 cut(s)	406, 814
AvaII	GGWCC	1 cut(s)	506
AxyI	CCTNAGG	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	3 cut(s)	511, 682, 685
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	186, 450
BfaI	CTAG	2 cut(s)	414, 530
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	3 cut(s)	525, 696, 699
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	3 cut(s)	526, 697, 700
Bme1390I	CCNGG	2 cut(s)	186, 450
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	40, 506
BmiI	GGNNCC	3 cut(s)	42, 489, 508
BmrFI	CCNGG	2 cut(s)	186, 450
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	894
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	27, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 655
Bse1I	ACTGG	1 cut(s)	255
Bse21I	CCTNAGG	1 cut(s)	217
Bse3DI	GCAATG	2 cut(s)	474, 731
BseBI	CCWGG	2 cut(s)	186, 450
BseDI	CCNNGG	2 cut(s)	27, 785
BseGI	GGATG	2 cut(s)	101, 679
BseLI	CCNNNNNNNGG	2 cut(s)	156, 655
BseMI	GCAATG	2 cut(s)	474, 731
BseMII	CTCAG	3 cut(s)	525, 724, 933
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	40, 43
BseXI	GCAGC	3 cut(s)	511, 682, 685
BsgI	GTGCAG	2 cut(s)	426, 510
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	156, 655
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	2 cut(s)	597, 813
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp1407I	TGTACA	2 cut(s)	823, 854
Bsp1720I	GCTNAGC	1 cut(s)	710
Bsp19I	CCATGG	1 cut(s)	27
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	3 cut(s)	524, 723, 932
BspLI	GGNNCC	3 cut(s)	42, 489, 508
BspT107I	GGYRCC	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	474, 731
BsrGI	TGTACA	2 cut(s)	823, 854
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	27, 785
BssT1I	CCWWGG	2 cut(s)	27, 785
Bst2UI	CCWGG	2 cut(s)	186, 450
Bst4CI	ACNGT	4 cut(s)	179, 737, 758, 854
Bst6I	CTCTTC	1 cut(s)	28
BstAFI	CTTAAG	1 cut(s)	236
BstAUI	TGTACA	2 cut(s)	823, 854
BstDEI	CTNAG	6 cut(s)	120, 217, 314, 511, 710, 919
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	101, 679
BstHHI	GCGC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	186, 450
BstSCI	CCNGG	2 cut(s)	184, 448
BstV1I	GCAGC	3 cut(s)	511, 682, 685
BstV2I	GAAGAC	1 cut(s)	894
Bsu36I	CCTNAGG	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	101, 679
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 733
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	40, 506
Csp6I	GTAC	4 cut(s)	76, 488, 824, 855
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	2 cut(s)	28, 827
CviQI	GTAC	4 cut(s)	76, 488, 824, 855
DdeI	CTNAG	6 cut(s)	120, 217, 314, 511, 710, 919
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	27, 785
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	184, 448
EcoT14I	CCWWGG	2 cut(s)	27, 785
ErhI	CCWWGG	2 cut(s)	27, 785
FaeI	CATG	2 cut(s)	31, 830
FalI	AAGNNNNNCTT	4 cut(s)	698, 730, 801, 833
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	2 cut(s)	27, 826
Fnu4HI	GCNGC	3 cut(s)	525, 696, 699
FokI	GGATG	2 cut(s)	88, 686
Fsp4HI	GCNGC	3 cut(s)	525, 696, 699
FspBI	CTAG	2 cut(s)	414, 530
FspI	TGCGCA	1 cut(s)	470
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	3 cut(s)	525, 696, 699
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	2 cut(s)	31, 830
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	2 cut(s)	754, 850
HindII	GTYRAC	2 cut(s)	754, 850
HinfI	GANTC	7 cut(s)	68, 212, 226, 410, 441, 746, 915
HphI	GGTGA	2 cut(s)	406, 814
Hpy166II	GTNNAC	4 cut(s)	506, 687, 754, 850
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	4 cut(s)	207, 230, 338, 551
Hpy8I	GTNNAC	4 cut(s)	506, 687, 754, 850
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	664, 736
HpyCH4III	ACNGT	4 cut(s)	179, 737, 758, 854
HpyCH4V	TGCA	6 cut(s)	368, 407, 479, 527, 677, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	6 cut(s)	120, 217, 314, 511, 710, 919
Hsp92II	CATG	2 cut(s)	31, 830
HspAI	GCGC	1 cut(s)	469
KpnI	GGTACC	1 cut(s)	491
LmnI	GCTCC	2 cut(s)	279, 942
Lsp1109I	GCAGC	3 cut(s)	511, 682, 685
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	2 cut(s)	414, 530
MaeIII	GTNAC	2 cut(s)	87, 578
MboII	GAAGA	6 cut(s)	15, 284, 305, 806, 817, 899
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	7 cut(s)	33, 137, 169, 481, 533, 544, 892
MlyI	GAGTC	3 cut(s)	62, 220, 221
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	8 cut(s)	17, 58, 61, 64, 436, 520, 587, 712
MseI	TTAA	3 cut(s)	237, 767, 924
MspA1I	CMGCKG	1 cut(s)	585
MspCI	CTTAAG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	186, 450
Mva1269I	GAATGC	2 cut(s)	597, 813
MvaI	CCWGG	2 cut(s)	186, 450
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	2 cut(s)	31, 830
NlaIV	GGNNCC	3 cut(s)	42, 489, 508
NmuCI	GTSAC	1 cut(s)	578
NsbI	TGCGCA	1 cut(s)	470
PctI	GAATGC	2 cut(s)	597, 813
PfeI	GAWTC	4 cut(s)	410, 441, 746, 915
PkrI	GCNGC	3 cut(s)	526, 697, 700
PleI	GAGTC	3 cut(s)	62, 220, 220
PpsI	GAGTC	3 cut(s)	62, 220, 220
Psp6I	CCWGG	2 cut(s)	184, 448
PspGI	CCWGG	2 cut(s)	184, 448
PspN4I	GGNNCC	3 cut(s)	42, 489, 508
PspPI	GGNCC	2 cut(s)	40, 506
PvuII	CAGCTG	1 cut(s)	585
RsaI	GTAC	4 cut(s)	77, 489, 825, 856
RsaNI	GTAC	4 cut(s)	76, 488, 824, 855
SaqAI	TTAA	3 cut(s)	237, 767, 924
SatI	GCNGC	3 cut(s)	525, 696, 699
Sau96I	GGNCC	2 cut(s)	40, 506
SchI	GAGTC	3 cut(s)	62, 220, 221
ScrFI	CCNGG	2 cut(s)	186, 450
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	1 cut(s)	664
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	228, 236
SmoI	CTYRAG	2 cut(s)	228, 236
Sse9I	AATT	7 cut(s)	33, 137, 169, 481, 533, 544, 892
SspMI	CTAG	2 cut(s)	414, 530
StyD4I	CCNGG	2 cut(s)	184, 448
StyI	CCWWGG	2 cut(s)	27, 785
TaaI	ACNGT	4 cut(s)	179, 737, 758, 854
TaqI	TCGA	1 cut(s)	876
TasI	AATT	7 cut(s)	33, 137, 169, 481, 533, 544, 892
TatI	WGTACW	2 cut(s)	823, 854
TfiI	GAWTC	4 cut(s)	410, 441, 746, 915
Tru1I	TTAA	3 cut(s)	237, 767, 924
Tru9I	TTAA	3 cut(s)	237, 767, 924
TscAI	CASTG	2 cut(s)	267, 740
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	3 cut(s)	524, 695, 698
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	314, 632, 639
TspRI	CASTG	2 cut(s)	267, 740
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	4 cut(s)	137, 481, 533, 544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	2 cut(s)	414, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.