Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

7909772 .. 7911879

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGCAAGTCTAATCATAAAAAACACAAGCACAATCACAAGCAACCTCTATTTTTCTCCGAGTTTGCTCACAAATCTACAGAGTTGGTTACGAAGGGTTACTACAGAGGCCAGATATTTAGCTTCACAACCCACAAAGATCTACTGGACCTTACTTCAACCATTGCAAGTAATGGAAGACACACAACTGCAGGTGTGGTAGGAGCATACCCATATAAAAATGCAACCTTTAGAGTTGGAGTTGACAAGGATTCAAAAATTGCAGCAAACTTCACTGTAAGTGAGAAGTTTCTTTCAGGCACAAAGACTACAGCTTCATTGAGCTTCCCTGATTACAAATCTAGCAAGCTCAAATTTCAATGTCTCCGAGAATATGCTGCTCTAGCCATGTCTGTTTCTCTGAACCAGTATCCTGCAATCAAATTTTCAGCTGCTGTTGGTTCTTCAAGTGTTGCCCTTGGCATGGAGGCAGAGTTCATGACTACTTCTAGATGTTTCTCCAAGTGCAGCGCAGGCATTAACATGAAGGGTCTCAATTGCAATGCTTCAATAATTCTGGAAAACAAAGGTGACTTGCTAAATGCATCATATGTTCATTATCTTGATCCAGAGAAGAGGAATGCAGCAGTGGTACAGTTCACTCAAGAACTCTCAACAAAGAGAAACACCTTAACCGTTGGAGGATCATGTGCTGTTGATAGTCATACAGCAGTGAAGGCTAGACTCGATGATCGAGGGAGGTTAAGAACTAACCTAGAGTACAGTTTCAGACCCAAGTCATGCTTGTCTATCTCTGGAGAGTTCAACACCCAGGCAGTTGACAGGAGTCCTAAAATTGGTGTGGAACTTGCTATTGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

287

Amino Acids

31.5

Weight (kDa)

9.5

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	16 - 280	1.1e-38	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AclWI	GGATC	2 cut(s)	599, 691
AcsI	RAATTY	2 cut(s)	353, 422
AfaI	GTAC	2 cut(s)	633, 761
AfiI	CCNNNNNNNGG	2 cut(s)	463, 836
AgsI	TTSAA	6 cut(s)	159, 255, 359, 447, 549, 805
AjnI	CCWGG	1 cut(s)	810
AloI	GAACNNNNNNTCC	2 cut(s)	458, 490
AluBI	AGCT	5 cut(s)	123, 314, 324, 349, 431
AluI	AGCT	5 cut(s)	123, 314, 324, 349, 431
Alw26I	GTCTC	2 cut(s)	368, 536
AlwI	GGATC	2 cut(s)	599, 691
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	5 cut(s)	263, 377, 431, 507, 623
ApoI	RAATTY	2 cut(s)	353, 422
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	5 cut(s)	275, 364, 418, 519, 635
BciT130I	CCWGG	1 cut(s)	812
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	368, 536
BfaI	CTAG	5 cut(s)	342, 383, 489, 720, 755
BfmI	CTRYAG	4 cut(s)	78, 103, 189, 309
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	5 cut(s)	264, 378, 432, 508, 624
BlsI	GCNGC	5 cut(s)	265, 379, 433, 509, 625
Bme1390I	CCNGG	1 cut(s)	812
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	812
BmsI	GCATC	1 cut(s)	593
BoxI	GACNNNNGTC	2 cut(s)	775, 825
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	457, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 836
Bse1I	ACTGG	2 cut(s)	150, 406
Bse3DI	GCAATG	2 cut(s)	162, 547
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	2 cut(s)	457, 810
BseLI	CCNNNNNNNGG	2 cut(s)	463, 836
BseMI	GCAATG	2 cut(s)	162, 547
BseNI	ACTGG	2 cut(s)	150, 406
BseXI	GCAGC	5 cut(s)	275, 364, 418, 519, 635
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	463, 836
BsmAI	GTCTC	2 cut(s)	368, 536
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	536
Bsp143I	GATC	5 cut(s)	139, 604, 683, 730, 856
BspANI	GGCC	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	2 cut(s)	599, 691
BspTNI	GGTCTC	1 cut(s)	536
BsrDI	GCAATG	2 cut(s)	162, 547
BsrI	ACTGG	2 cut(s)	150, 406
BssECI	CCNNGG	2 cut(s)	457, 810
BssMI	GATC	5 cut(s)	139, 604, 683, 730, 856
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	4 cut(s)	277, 636, 676, 764
Bst6I	CTCTTC	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	347, 514
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	5 cut(s)	142, 607, 686, 733, 859
BstMAI	GTCTC	2 cut(s)	368, 536
BstMBI	GATC	5 cut(s)	139, 604, 683, 730, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 513, 716
BstNI	CCWGG	1 cut(s)	812
BstPAI	GACNNNNGTC	2 cut(s)	775, 825
BstSCI	CCNGG	1 cut(s)	810
BstSFI	CTRYAG	4 cut(s)	78, 103, 189, 309
BstV1I	GCAGC	5 cut(s)	275, 364, 418, 519, 635
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	111
BtsI	GCAGTG	2 cut(s)	633, 717
BtsIMutI	CAGTG	3 cut(s)	273, 633, 717
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	347, 514
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	477
CfoI	GCGC	1 cut(s)	512
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	632, 760
CviAII	CATG	6 cut(s)	388, 463, 478, 523, 687, 780
CviJI	RGCY	8 cut(s)	111, 123, 314, 324, 349, 386, 431, 719
CviKI_1	RGCY	8 cut(s)	111, 123, 314, 324, 349, 386, 431, 719
CviQI	GTAC	2 cut(s)	632, 760
DpnI	GATC	5 cut(s)	141, 606, 685, 732, 858
DpnII	GATC	5 cut(s)	139, 604, 683, 730, 856
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	6 cut(s)	391, 466, 481, 526, 690, 783
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	6 cut(s)	387, 462, 477, 522, 686, 779
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	264, 378, 432, 508, 624
Fsp4HI	GCNGC	5 cut(s)	264, 378, 432, 508, 624
FspBI	CTAG	5 cut(s)	342, 383, 489, 720, 755
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	5 cut(s)	264, 378, 432, 508, 624
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	512
Hin1II	CATG	6 cut(s)	391, 466, 481, 526, 690, 783
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	2 cut(s)	244, 820
HindII	GTYRAC	2 cut(s)	244, 820
HinfI	GANTC	3 cut(s)	251, 723, 826
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	3 cut(s)	244, 639, 820
Hpy188I	TCNGA	5 cut(s)	61, 368, 402, 770, 863
Hpy188III	TCNNGA	7 cut(s)	478, 489, 557, 602, 608, 644, 795
Hpy8I	GTNNAC	3 cut(s)	244, 639, 820
HpyAV	CCTTC	3 cut(s)	88, 520, 709
HpyCH4III	ACNGT	4 cut(s)	277, 636, 676, 764
HpyCH4V	TGCA	9 cut(s)	167, 191, 224, 263, 416, 507, 540, 584, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 513, 716
Hsp92II	CATG	6 cut(s)	391, 466, 481, 526, 690, 783
HspAI	GCGC	1 cut(s)	510
Kzo9I	GATC	5 cut(s)	139, 604, 683, 730, 856
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	5 cut(s)	275, 364, 418, 519, 635
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	5 cut(s)	342, 383, 489, 720, 755
MaeIII	GTNAC	3 cut(s)	88, 98, 569
MalI	GATC	5 cut(s)	141, 606, 685, 732, 858
MboI	GATC	5 cut(s)	139, 604, 683, 730, 856
MboII	GAAGA	3 cut(s)	189, 435, 625
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	6 cut(s)	258, 353, 422, 535, 552, 834
MlyI	GAGTC	2 cut(s)	717, 835
MmeI	TCCRAC	2 cut(s)	217, 658
MnlI	CCTC	7 cut(s)	57, 101, 460, 609, 674, 728, 732
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	3 cut(s)	519, 671, 743
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	812
MunI	CAATTG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	3 cut(s)	383, 513, 716
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	5 cut(s)	139, 604, 683, 730, 856
NlaIII	CATG	6 cut(s)	391, 466, 481, 526, 690, 783
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	586
PagI	TCATGA	1 cut(s)	477
PaqCI	CACCTGC	1 cut(s)	182
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	265, 379, 433, 509, 625
PleI	GAGTC	2 cut(s)	717, 834
PpsI	GAGTC	2 cut(s)	717, 834
PshAI	GACNNNNGTC	2 cut(s)	775, 825
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	633, 761
RsaNI	GTAC	2 cut(s)	632, 760
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	519, 671, 743
SatI	GCNGC	5 cut(s)	264, 378, 432, 508, 624
Sau3AI	GATC	5 cut(s)	139, 604, 683, 730, 856
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	2 cut(s)	717, 835
ScrFI	CCNGG	1 cut(s)	812
SfaNI	GCATC	1 cut(s)	593
SfcI	CTRYAG	4 cut(s)	78, 103, 189, 309
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
Sse9I	AATT	6 cut(s)	258, 353, 422, 535, 552, 834
SspMI	CTAG	5 cut(s)	342, 383, 489, 720, 755
StyD4I	CCNGG	1 cut(s)	810
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	4 cut(s)	277, 636, 676, 764
TaqI	TCGA	2 cut(s)	726, 733
TasI	AATT	6 cut(s)	258, 353, 422, 535, 552, 834
TatI	WGTACW	1 cut(s)	759
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	519, 671, 743
Tru9I	TTAA	3 cut(s)	519, 671, 743
TscAI	CASTG	3 cut(s)	280, 633, 717
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	5 cut(s)	263, 377, 431, 507, 623
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	306, 466, 539, 584
TspRI	CASTG	3 cut(s)	280, 633, 717
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	353, 422
XbaI	TCTAGA	1 cut(s)	488
XspI	CTAG	5 cut(s)	342, 383, 489, 720, 755
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.