Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

29010340 .. 29014420

Gene Structure 4081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAACATCGGTTTCTTAGCTTCAAAAAGCATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAAGCACCAAAGTTCTTGGTGATTGGTTGTGCAGATTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCAGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCAGAAACAAATGCTGCACTAGAATTTTCTGTAAATTCTCTTGAAGTCAAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAATAGACAAAAGTAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTCAACCGTTCGTTGTTAAACCTACTCACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTTTCTGTACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACACTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAATCTCAGTTAAAAGTCATTTACTTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

216

Amino Acids

24.49

Weight (kDa)

8.6

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	32 - 185	6.7e-43	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	190
AcsI	RAATTY	3 cut(s)	184, 236, 247
AfaI	GTAC	3 cut(s)	192, 528, 559
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	25, 257, 601
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	6 cut(s)	21, 288, 345, 412, 417, 648
AluI	AGCT	6 cut(s)	21, 288, 345, 412, 417, 648
Alw21I	GWGCWC	1 cut(s)	310
ApeKI	GCWGC	3 cut(s)	227, 398, 401
ApoI	RAATTY	3 cut(s)	184, 236, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp718I	GGTACC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	109, 517
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	214, 385, 388
BciT130I	CCWGG	1 cut(s)	153
BfaI	CTAG	2 cut(s)	117, 233
BisI	GCNGC	3 cut(s)	228, 399, 402
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	3 cut(s)	229, 400, 403
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	192, 211
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	177, 434
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	2 cut(s)	177, 434
BseMII	CTCAG	3 cut(s)	228, 427, 636
BseXI	GCAGC	3 cut(s)	214, 385, 388
BsgI	GTGCAG	2 cut(s)	129, 213
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	2 cut(s)	300, 516
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	2 cut(s)	526, 557
Bsp1720I	GCTNAGC	1 cut(s)	413
BspCNI	CTCAG	3 cut(s)	227, 426, 635
BspLI	GGNNCC	2 cut(s)	192, 211
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	177, 434
BsrGI	TGTACA	2 cut(s)	526, 557
BssECI	CCNNGG	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	440, 461, 557
BstAUI	TGTACA	2 cut(s)	526, 557
BstDEI	CTNAG	4 cut(s)	17, 214, 413, 622
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	214, 385, 388
BstV2I	GAAGAC	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	436
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	191, 527, 558
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	8 cut(s)	21, 151, 288, 345, 398, 412, 417, 648
CviKI_1	RGCY	8 cut(s)	21, 151, 288, 345, 398, 412, 417, 648
CviQI	GTAC	3 cut(s)	191, 527, 558
DdeI	CTNAG	4 cut(s)	17, 214, 413, 622
Eco130I	CCWWGG	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	1 cut(s)	533
FaiI	YATR	7 cut(s)	33, 167, 269, 314, 320, 531, 543
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 504, 536
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	228, 399, 402
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	228, 399, 402
FspBI	CTAG	2 cut(s)	117, 233
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	3 cut(s)	228, 399, 402
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	457, 553
HindII	GTYRAC	2 cut(s)	457, 553
HinfI	GANTC	4 cut(s)	113, 144, 449, 618
HphI	GGTGA	2 cut(s)	109, 517
Hpy166II	GTNNAC	4 cut(s)	209, 390, 457, 553
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	41, 254
Hpy8I	GTNNAC	4 cut(s)	209, 390, 457, 553
HpyAV	CCTTC	2 cut(s)	367, 439
HpyCH4III	ACNGT	3 cut(s)	440, 461, 557
HpyCH4V	TGCA	6 cut(s)	71, 110, 182, 230, 380, 432
HpyF3I	CTNAG	4 cut(s)	17, 214, 413, 622
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	645
LpnPI	CCDG	6 cut(s)	26, 125, 138, 161, 165, 437
Lsp1109I	GCAGC	3 cut(s)	214, 385, 388
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	117, 233
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	3 cut(s)	509, 520, 602
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	4 cut(s)	184, 236, 247, 595
MnlI	CCTC	4 cut(s)	139, 223, 290, 415
MseI	TTAA	2 cut(s)	470, 627
MspA1I	CMGCKG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	2 cut(s)	300, 516
MvaI	CCWGG	1 cut(s)	153
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	192, 211
NmuCI	GTSAC	1 cut(s)	281
NsbI	TGCGCA	1 cut(s)	173
PctI	GAATGC	2 cut(s)	300, 516
PfeI	GAWTC	4 cut(s)	113, 144, 449, 618
PkrI	GCNGC	3 cut(s)	229, 400, 403
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	192, 211
PspPI	GGNCC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	3 cut(s)	192, 528, 559
RsaNI	GTAC	3 cut(s)	191, 527, 558
SaqAI	TTAA	2 cut(s)	470, 627
SatI	GCNGC	3 cut(s)	228, 399, 402
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	9 cut(s)	23, 290, 347, 386, 414, 419, 477, 507, 650
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	4 cut(s)	184, 236, 247, 595
SspMI	CTAG	2 cut(s)	117, 233
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	440, 461, 557
TaqI	TCGA	1 cut(s)	579
TasI	AATT	4 cut(s)	184, 236, 247, 595
TatI	WGTACW	2 cut(s)	526, 557
TfiI	GAWTC	4 cut(s)	113, 144, 449, 618
Tru1I	TTAA	2 cut(s)	470, 627
Tru9I	TTAA	2 cut(s)	470, 627
TscAI	CASTG	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	227, 398, 401
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 335, 342
TspRI	CASTG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	3 cut(s)	184, 236, 247
XspI	CTAG	2 cut(s)	117, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.