Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

57282541 .. 57285009

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTCTGGCCAATCCCTTCTCGGATTGCTCCAACAATGGCAGCTCTAAGTTTTCTAAGACCTGGTTTAAGTAATACCCATCTGGGTGTTCATAGACACTCCTCTGGTTCAAACCAGAGAAATTTGGCACAAGCTGAAGAAGTCCAAGTAGGATTACTGCATGAAATCAAAAGACATCCAGTTGTAAGAGTGGAGGCTTTGAGTGATGTGTCAAAAGCTAAGAATGGGCCCAACTTTAGTGAAATGAAGGATAGGTTTCTCAGTTTTAAGAAGCACAAATTTTTGGAAGAGCCGGAGCATTTCCAAAATCTGGCTCAAGTTCAAGATCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGAGTATGCCCCTCTAACATCCTAGGCTTTCAACCTGGAGAGGCGTTTATGATTAGAAATGTAGCAAACCTTGTTCCCCCCTTTGAGAATGGTGCATCAGAGACTAATGCAGCCCTCGAGTTTGCAGTAAATACTCTTGAAGTTGAGAATATATTCGTCATTGGCCACAGTAGTTGTGCAGGAATTGAGACTCTCATGACAATGCAAGATGATGGTGATTCAAGTAGCTTTACTCATAGATGGGTTGTGAATGCTAAAGTCGCCAAATTAAGAACAAAAGCTGATGCGCTGCACCTTAGCTTTGATCAGCAATGCAGATACTGTGAGAAGGAATCGATCAATCGTTCATTATTGAATTTGCTAGCATATCCATGGATAGCAGACAAAGTAGGGAAGAATATGCTCTCTGTTCATGGAGGACACTATGATTTCTTGAATTGTGCATTTGATAAATGGACACTTGATGTAAATGGTAACAACAGTACCCTAGGGGACAGACAGTACTTGGTTAAAGATCGAGAACTTTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

297

Amino Acids

33.37

Weight (kDa)

6.63

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	113 - 264	2.5e-38	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	2 cut(s)	8, 523
AcsI	RAATTY	3 cut(s)	121, 278, 715
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	2 cut(s)	844, 863
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	7 cut(s)	111, 323, 392, 500, 582, 715, 796
AjnI	CCWGG	2 cut(s)	61, 394
AluBI	AGCT	6 cut(s)	44, 134, 218, 588, 641, 660
AluI	AGCT	6 cut(s)	44, 134, 218, 588, 641, 660
Alw26I	GTCTC	2 cut(s)	455, 542
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	681
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	3 cut(s)	8, 227, 523
ApaI	GGGCCC	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	41, 470, 649
ApoI	RAATTY	3 cut(s)	121, 278, 715
Asp700I	GAANNNNTTC	1 cut(s)	512
AspA2I	CCTAGG	2 cut(s)	382, 847
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	227, 228
AsuHPI	GGTGA	2 cut(s)	352, 587
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	476
AvrII	CCTAGG	2 cut(s)	382, 847
BaeGI	GKGCMC	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	826, 859
BalI	TGGCCA	2 cut(s)	10, 525
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	53, 482, 636
BccI	CCATC	3 cut(s)	87, 566, 594
BciT130I	CCWGG	2 cut(s)	63, 396
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	455, 542
BfaI	CTAG	4 cut(s)	360, 383, 722, 848
BisI	GCNGC	3 cut(s)	42, 471, 650
BlnI	CCTAGG	2 cut(s)	382, 847
BlsI	GCNGC	3 cut(s)	43, 472, 651
BmcAI	AGTACT	1 cut(s)	863
Bme1390I	CCNGG	2 cut(s)	63, 396
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	227, 228
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	63, 396
BmsI	GCATC	2 cut(s)	464, 634
BmtI	GCTAGC	1 cut(s)	725
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	382, 731, 847
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	2 cut(s)	63, 396
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	382, 731, 847
BseGI	GGATG	2 cut(s)	175, 378
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	53, 482, 636
BsgI	GTGCAG	3 cut(s)	372, 558, 635
BshFI	GGCC	3 cut(s)	10, 229, 525
BshVI	ATCGAT	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	455, 542
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	10, 229, 525
BsoBI	CYCGRG	1 cut(s)	476
Bsp120I	GGGCCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	325, 664, 696, 874
Bsp19I	CCATGG	1 cut(s)	731
BspANI	GGCC	3 cut(s)	10, 229, 525
BspCNI	CTCAG	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	695
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	229
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	382, 731, 847
BssMI	GATC	4 cut(s)	325, 664, 696, 874
BssT1I	CCWWGG	3 cut(s)	382, 731, 847
Bst2UI	CCWGG	2 cut(s)	63, 396
Bst4CI	ACNGT	4 cut(s)	530, 683, 842, 861
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	6 cut(s)	47, 56, 219, 260, 330, 656
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	2 cut(s)	175, 378
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	4 cut(s)	328, 667, 699, 877
BstMAI	GTCTC	2 cut(s)	455, 542
BstMBI	GATC	4 cut(s)	325, 664, 696, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	2 cut(s)	63, 396
BstSCI	CCNGG	2 cut(s)	61, 394
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	53, 482, 636
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	695
BsuRI	GGCC	3 cut(s)	10, 229, 525
BsuTUI	ATCGAT	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	175, 378
Cac8I	GCNNGC	1 cut(s)	723
CaiI	CAGNNNCTG	1 cut(s)	681
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	227, 228
ClaI	ATCGAT	1 cut(s)	695
CsiI	ACCWGGT	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	843, 862
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviAII	CATG	4 cut(s)	161, 556, 732, 773
CviQI	GTAC	2 cut(s)	843, 862
DdeI	CTNAG	6 cut(s)	47, 56, 219, 260, 330, 656
DpnI	GATC	4 cut(s)	327, 666, 698, 876
DpnII	GATC	4 cut(s)	325, 664, 696, 874
EaeI	YGGCCR	2 cut(s)	8, 523
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	3 cut(s)	382, 731, 847
Eco24I	GRGCYC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	61, 394
EcoT14I	CCWWGG	3 cut(s)	382, 731, 847
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	3 cut(s)	382, 731, 847
FaeI	CATG	4 cut(s)	164, 559, 735, 776
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	4 cut(s)	160, 555, 731, 772
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	3 cut(s)	42, 471, 650
FokI	GGATG	2 cut(s)	162, 365
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	42, 471, 650
FspBI	CTAG	4 cut(s)	360, 383, 722, 848
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	3 cut(s)	42, 471, 650
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	10, 229, 525
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	4 cut(s)	164, 559, 735, 776
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HinfI	GANTC	4 cut(s)	356, 550, 578, 692
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	352, 587
Hpy188I	TCNGA	3 cut(s)	24, 460, 893
Hpy188III	TCNNGA	6 cut(s)	323, 360, 497, 556, 793, 878
HpyAV	CCTTC	3 cut(s)	27, 241, 682
HpyCH4III	ACNGT	4 cut(s)	530, 683, 842, 861
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	6 cut(s)	47, 56, 219, 260, 330, 656
Hsp92II	CATG	4 cut(s)	164, 559, 735, 776
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	325, 664, 696, 874
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	34, 295
Lsp1109I	GCAGC	3 cut(s)	53, 482, 636
LweI	GCATC	2 cut(s)	464, 634
MabI	ACCWGGT	1 cut(s)	61
MaeI	CTAG	4 cut(s)	360, 383, 722, 848
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	4 cut(s)	327, 666, 698, 876
MboI	GATC	4 cut(s)	325, 664, 696, 874
MboII	GAAGA	3 cut(s)	149, 299, 766
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	2 cut(s)	10, 525
MluCI	AATT	6 cut(s)	121, 278, 543, 626, 715, 796
MluNI	TGGCCA	2 cut(s)	10, 525
MlyI	GAGTC	2 cut(s)	350, 544
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	112, 187, 382, 394, 485, 770
Mox20I	TGGCCA	2 cut(s)	10, 525
MroXI	GAANNNNTTC	1 cut(s)	512
MscI	TGGCCA	2 cut(s)	10, 525
MseI	TTAA	4 cut(s)	68, 267, 629, 870
MslI	CAYNNNNRTG	3 cut(s)	84, 560, 730
Msp20I	TGGCCA	2 cut(s)	10, 525
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	63, 396
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	63, 396
MwoI	GCNNNNNNNGC	1 cut(s)	620
NcoI	CCATGG	1 cut(s)	731
NdeII	GATC	4 cut(s)	325, 664, 696, 874
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	4 cut(s)	164, 559, 735, 776
NlaIV	GGNNCC	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	578, 692
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	43, 472, 651
PleI	GAGTC	2 cut(s)	350, 544
PpsI	GAGTC	2 cut(s)	350, 544
Psp6I	CCWGG	2 cut(s)	61, 394
PspGI	CCWGG	2 cut(s)	61, 394
PspN4I	GGNNCC	1 cut(s)	229
PspOMI	GGGCCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	227, 228
PspXI	VCTCGAGB	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	844, 863
RsaNI	GTAC	2 cut(s)	843, 862
RseI	CAYNNNNRTG	3 cut(s)	84, 560, 730
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	68, 267, 629, 870
SatI	GCNGC	3 cut(s)	42, 471, 650
Sau3AI	GATC	4 cut(s)	325, 664, 696, 874
Sau96I	GGNCC	2 cut(s)	227, 228
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	2 cut(s)	350, 544
ScrFI	CCNGG	2 cut(s)	63, 396
SduI	GDGCHC	1 cut(s)	231
SexAI	ACCWGGT	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	464, 634
Sfr274I	CTCGAG	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	3 cut(s)	84, 560, 730
SmlI	CTYRAG	2 cut(s)	315, 476
SmoI	CTYRAG	2 cut(s)	315, 476
Sse9I	AATT	6 cut(s)	121, 278, 543, 626, 715, 796
SspMI	CTAG	4 cut(s)	360, 383, 722, 848
StyD4I	CCNGG	2 cut(s)	61, 394
StyI	CCWWGG	3 cut(s)	382, 731, 847
TaaI	ACNGT	4 cut(s)	530, 683, 842, 861
TaqI	TCGA	3 cut(s)	477, 695, 877
TasI	AATT	6 cut(s)	121, 278, 543, 626, 715, 796
TatI	WGTACW	1 cut(s)	861
TfiI	GAWTC	2 cut(s)	578, 692
Tru1I	TTAA	4 cut(s)	68, 267, 629, 870
Tru9I	TTAA	4 cut(s)	68, 267, 629, 870
TseI	GCWGC	3 cut(s)	41, 470, 649
TspDTI	ATGAA	5 cut(s)	80, 177, 260, 696, 761
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	3 cut(s)	121, 278, 715
XbaI	TCTAGA	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	476
XmaJI	CCTAGG	2 cut(s)	382, 847
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	4 cut(s)	360, 383, 722, 848
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.