Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

8025430 .. 8028425

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTCTGGCCAATCCGCCAACAAGCTTCTCGGATTGCTCCAACAGTGGCAGCTCTAAGTTTTCTAAGACCTAGTTTAAGTAATACCCATCTGGGTGTTCATAGACACTCCTCTGGTTCAAACCAGAGAAATTTGGCACAAGCTGAAGAAGTCCAAGTAGGATTACTGCATGAAATCAAAAGACATCCAGTTGTAAGAGTGGAGGCTTTGAGTGATGTGTCAAAAGCTAAGAATGGGCCCAACTTTAGTGAAATGAAGGATAGGTTTCTCAGTTTTAAGAAGCGCAAATTTTTGAAAGAGTCGGAGCATTTCCAAAATCTGGCTCAAGTTCAAGATCCTAAGGTTGAGAATATATTCGTCATTGGCCACAGTAGTTGTGCAGGAATTGAGACTCTCATGACAATGCAAGATGATGGTGATTCAAGTAGCTTTACTCATAGATGGGTTGTGAATGCTAAAGTCGCCAAATTAAGAACAAAAGCTGATGCGCTGCACCTTAGCTTTGATCAGCAATGCAGATACTGTGAGATGGAATCGATCAATCGTTCATTATTGAATTTGCTTGCATATCCATGGATAGCAGACAAAGTAGGGAAGAATATGCTCTCTGTTCATGGAGGATACTATGATTTCTTGAATTGTGCATTTGATAAATGGACACTAGATGTAAATGGTAACAACAGTACCCTAGGGGACAAACAGTACTTGGTTAAAGATCGAGAACTTTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

244

Amino Acids

27.79

Weight (kDa)

9.0

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	110 - 211	7.2e-16	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	2 cut(s)	8, 364
AcsI	RAATTY	3 cut(s)	130, 287, 556
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	685, 704
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	6 cut(s)	120, 295, 332, 423, 556, 637
AluBI	AGCT	7 cut(s)	26, 53, 143, 227, 429, 482, 501
AluI	AGCT	7 cut(s)	26, 53, 143, 227, 429, 482, 501
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	522
AoxI	GGCC	3 cut(s)	8, 236, 364
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	50, 490
ApoI	RAATTY	3 cut(s)	130, 287, 556
Asp700I	GAANNNNTTC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	688
AspLEI	GCGC	2 cut(s)	285, 490
AspS9I	GGNCC	2 cut(s)	236, 237
AsuHPI	GGTGA	1 cut(s)	428
AvrII	CCTAGG	1 cut(s)	688
AxyI	CCTNAGG	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	667, 700
BalI	TGGCCA	2 cut(s)	10, 366
BanII	GRGCYC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	62, 477
BccI	CCATC	4 cut(s)	96, 407, 435, 523
BciVI	GTATCC	1 cut(s)	614
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	3 cut(s)	72, 662, 689
BfuI	GTATCC	1 cut(s)	614
BisI	GCNGC	2 cut(s)	51, 491
BlnI	CCTAGG	1 cut(s)	688
BlsI	GCNGC	2 cut(s)	52, 492
BmcAI	AGTACT	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	236, 237
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	475
Bpu10I	CCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	572, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	518
BseCI	ATCGAT	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	572, 688
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	62, 477
BsgI	GTGCAG	2 cut(s)	399, 476
BshFI	GGCC	3 cut(s)	10, 238, 366
BshVI	ATCGAT	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	10, 238, 366
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	334, 505, 537, 715
Bsp19I	CCATGG	1 cut(s)	572
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	3 cut(s)	10, 238, 366
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	572, 688
BssMI	GATC	4 cut(s)	334, 505, 537, 715
BssT1I	CCWWGG	2 cut(s)	572, 688
Bst4CI	ACNGT	5 cut(s)	46, 371, 524, 683, 702
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	6 cut(s)	56, 65, 228, 269, 339, 497
BstDSI	CCRYGG	1 cut(s)	572
BstF5I	GGATG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	285, 490
BstKTI	GATC	4 cut(s)	337, 508, 540, 718
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	4 cut(s)	334, 505, 537, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	62, 477
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	536
Bsu36I	CCTNAGG	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	3 cut(s)	10, 238, 366
BsuTUI	ATCGAT	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	572
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	522
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	2 cut(s)	285, 490
Cfr13I	GGNCC	2 cut(s)	236, 237
ClaI	ATCGAT	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	684, 703
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	4 cut(s)	170, 397, 573, 614
CviQI	GTAC	2 cut(s)	684, 703
DdeI	CTNAG	6 cut(s)	56, 65, 228, 269, 339, 497
DpnI	GATC	4 cut(s)	336, 507, 539, 717
DpnII	GATC	4 cut(s)	334, 505, 537, 715
EaeI	YGGCCR	2 cut(s)	8, 364
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	2 cut(s)	572, 688
Eco24I	GRGCYC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	572, 688
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	572, 688
FaeI	CATG	4 cut(s)	173, 400, 576, 617
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	4 cut(s)	169, 396, 572, 613
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	51, 491
FokI	GGATG	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	51, 491
FspBI	CTAG	3 cut(s)	72, 662, 689
GlaI	GCGC	2 cut(s)	284, 489
GluI	GCNGC	2 cut(s)	51, 491
HaeIII	GGCC	3 cut(s)	10, 238, 366
HhaI	GCGC	2 cut(s)	285, 490
Hin1II	CATG	4 cut(s)	173, 400, 576, 617
Hin6I	GCGC	2 cut(s)	283, 488
HinP1I	GCGC	2 cut(s)	283, 488
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	4 cut(s)	299, 391, 419, 533
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	33, 304, 734
Hpy188III	TCNNGA	4 cut(s)	332, 397, 634, 719
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	5 cut(s)	46, 371, 524, 683, 702
HpyCH4V	TGCA	7 cut(s)	169, 380, 406, 493, 516, 566, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	6 cut(s)	56, 65, 228, 269, 339, 497
Hsp92II	CATG	4 cut(s)	173, 400, 576, 617
HspAI	GCGC	2 cut(s)	283, 488
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	334, 505, 537, 715
LmnI	GCTCC	2 cut(s)	43, 304
LpnPI	CCDG	6 cut(s)	77, 99, 137, 201, 305, 366
Lsp1109I	GCAGC	2 cut(s)	62, 477
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	3 cut(s)	72, 662, 689
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	4 cut(s)	336, 507, 539, 717
MboI	GATC	4 cut(s)	334, 505, 537, 715
MboII	GAAGA	2 cut(s)	158, 607
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	2 cut(s)	10, 366
MluCI	AATT	6 cut(s)	130, 287, 384, 467, 556, 637
MluNI	TGGCCA	2 cut(s)	10, 366
MlyI	GAGTC	2 cut(s)	308, 385
MmeI	TCCRAC	2 cut(s)	65, 282
MnlI	CCTC	3 cut(s)	121, 196, 611
Mox20I	TGGCCA	2 cut(s)	10, 366
MroXI	GAANNNNTTC	1 cut(s)	353
MscI	TGGCCA	2 cut(s)	10, 366
MseI	TTAA	4 cut(s)	77, 276, 470, 711
MslI	CAYNNNNRTG	3 cut(s)	93, 401, 571
Msp20I	TGGCCA	2 cut(s)	10, 366
Mva1269I	GAATGC	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	4 cut(s)	334, 505, 537, 715
NlaIII	CATG	4 cut(s)	173, 400, 576, 617
NlaIV	GGNNCC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	396
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	419, 533
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	52, 492
PleI	GAGTC	2 cut(s)	307, 385
PpsI	GAGTC	2 cut(s)	307, 385
PspN4I	GGNNCC	1 cut(s)	238
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	236, 237
PstNI	CAGNNNCTG	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	685, 704
RsaNI	GTAC	2 cut(s)	684, 703
RseI	CAYNNNNRTG	3 cut(s)	93, 401, 571
SaqAI	TTAA	4 cut(s)	77, 276, 470, 711
SatI	GCNGC	2 cut(s)	51, 491
Sau3AI	GATC	4 cut(s)	334, 505, 537, 715
Sau96I	GGNCC	2 cut(s)	236, 237
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	2 cut(s)	308, 385
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	475
SmiMI	CAYNNNNRTG	3 cut(s)	93, 401, 571
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	6 cut(s)	130, 287, 384, 467, 556, 637
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	3 cut(s)	72, 662, 689
StyI	CCWWGG	2 cut(s)	572, 688
TaaI	ACNGT	5 cut(s)	46, 371, 524, 683, 702
TaqI	TCGA	2 cut(s)	536, 718
TasI	AATT	6 cut(s)	130, 287, 384, 467, 556, 637
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	2 cut(s)	419, 533
Tru1I	TTAA	4 cut(s)	77, 276, 470, 711
Tru9I	TTAA	4 cut(s)	77, 276, 470, 711
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	50, 490
TspDTI	ATGAA	5 cut(s)	89, 186, 269, 537, 602
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	319
XapI	RAATTY	3 cut(s)	130, 287, 556
XmaJI	CCTAGG	1 cut(s)	688
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	3 cut(s)	72, 662, 689
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.