Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

7912270 .. 7913329

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0058800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAACTAGCCTCAATGGCTGCAAGTTCCAACTTCTCCATACTGAACCCCAGAAACCCATATAGAACCCAAATTGCTTCTTCATCACTGCACCCATCAATCCAGAATAGCACCACCCCAGTTCAGAATAAAAAGGAGGATAGCATTGAAGTTACTATGCCAACCATGTCTGAGATATTGGACTCATCGAGGTCCCAGAAGCTTGACCTTAAGCTTCAAACTCTAGGACCCTTTTTCAGAATCACAGCCAAAAGCTTGGAAACAGAGAAAGAGCTCGGCAGGGCTGAGGGGTTCATAAGGGTATGGCTAAGCGGGAGAATTCTTCACTTGGATTCAATCAAGTTGCGAAGAGAGACGATTGGAATGGAGAAGTCAATCTTTGGCATTGGTTTGTTCATTGGAGCCGTTGCAATTAGACATGGCTATGATTGTGGTTGCGACAAAGCTGAGTTGCTGGCTATCAATGACTCTGACAAATACCATCACAAGCTTGTTAGGTTCTATTCAAGAATTGGATTCAAAGCTGTGTATGAAGTAACTGGTTCAACATTTGGGGACCTTGCCCACATGTTGGTCTGGGGAGGAGTTGGGACAAGAATGGATGCCAAAGTTGAAGCACTTCTGATAAAATGGTGCAGCAGGTTCAAATCTCGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

219

Amino Acids

24.57

Weight (kDa)

9.38

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	630
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	571
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	8 cut(s)	149, 218, 336, 507, 520, 546, 614, 646
AluBI	AGCT	7 cut(s)	202, 214, 255, 274, 446, 490, 524
AluI	AGCT	7 cut(s)	202, 214, 255, 274, 446, 490, 524
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	20, 636
ApoI	RAATTY	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	3 cut(s)	192, 227, 556
AvaII	GGWCC	3 cut(s)	192, 227, 556
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	7, 648
BccI	CCATC	2 cut(s)	103, 489
BceAI	ACGGC	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	8, 224
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	630
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	21, 637
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	2 cut(s)	22, 638
Bme18I	GGWCC	3 cut(s)	192, 227, 556
BmgT120I	GGNCC	3 cut(s)	192, 227, 556
BmiI	GGNNCC	4 cut(s)	194, 229, 403, 557
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	119, 544
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMII	CTCAG	3 cut(s)	162, 276, 438
BseNI	ACTGG	2 cut(s)	119, 544
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	7, 648
BsgI	GTGCAG	2 cut(s)	74, 655
BsiHKAI	GWGCWC	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	178, 569, 604
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	3 cut(s)	178, 569, 604
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	163, 277, 439
BspLI	GGNNCC	4 cut(s)	194, 229, 403, 557
BspMI	ACCTGC	1 cut(s)	630
BspTI	CTTAAG	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	119, 544
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	1 cut(s)	343
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	4 cut(s)	171, 285, 308, 447
BstF5I	GGATG	1 cut(s)	607
BstMAI	GTCTC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	7, 648
BstXI	CCANNNNNNTGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	456
Cfr13I	GGNCC	3 cut(s)	192, 227, 556
CviAII	CATG	3 cut(s)	166, 419, 568
DdeI	CTNAG	4 cut(s)	171, 285, 308, 447
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	3 cut(s)	192, 227, 556
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoO109I	RGGNCCY	3 cut(s)	192, 227, 556
EcoRI	GAATTC	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	3 cut(s)	169, 422, 571
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	3 cut(s)	178, 569, 604
FatI	CATG	3 cut(s)	165, 418, 567
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	2 cut(s)	21, 637
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	21, 637
FspBI	CTAG	2 cut(s)	8, 224
GluI	GCNGC	2 cut(s)	21, 637
Hin1II	CATG	3 cut(s)	169, 422, 571
HindIII	AAGCTT	4 cut(s)	200, 212, 253, 488
HinfI	GANTC	5 cut(s)	182, 240, 332, 467, 516
Hpy188I	TCNGA	5 cut(s)	126, 172, 239, 472, 624
Hpy188III	TCNNGA	3 cut(s)	103, 507, 651
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4V	TGCA	4 cut(s)	23, 91, 410, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	4 cut(s)	171, 285, 308, 447
Hsp92II	CATG	3 cut(s)	169, 422, 571
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	9 cut(s)	64, 116, 132, 209, 265, 440, 525, 562, 625
Lsp1109I	GCAGC	2 cut(s)	7, 648
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	8, 224
MaeIII	GTNAC	2 cut(s)	151, 535
MboII	GAAGA	3 cut(s)	72, 314, 360
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	72, 318, 411, 510
MlyI	GAGTC	2 cut(s)	176, 461
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	22, 130, 183, 280, 575
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	169, 422, 571
NlaIV	GGNNCC	4 cut(s)	194, 229, 403, 557
NmeAIII	GCCGAG	1 cut(s)	255
NspI	RCATGY	1 cut(s)	571
PciI	ACATGT	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	240, 332, 516
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	22, 638
PleI	GAGTC	2 cut(s)	176, 461
PpsI	GAGTC	2 cut(s)	176, 461
PpuMI	RGGWCCY	3 cut(s)	192, 227, 556
PscI	ACATGT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	276
Psp5II	RGGWCCY	3 cut(s)	192, 227, 556
PspN4I	GGNNCC	4 cut(s)	194, 229, 403, 557
PspPI	GGNCC	3 cut(s)	192, 227, 556
PspPPI	RGGWCCY	3 cut(s)	192, 227, 556
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	21, 637
Sau96I	GGNCC	3 cut(s)	192, 227, 556
SchI	GAGTC	2 cut(s)	176, 461
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	3 cut(s)	192, 227, 556
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	72, 318, 411, 510
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	8, 224
SstI	GAGCTC	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	657
TaqI	TCGA	2 cut(s)	188, 652
TasI	AATT	4 cut(s)	72, 318, 411, 510
TfiI	GAWTC	3 cut(s)	240, 332, 516
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	2 cut(s)	20, 636
TspDTI	ATGAA	4 cut(s)	72, 283, 385, 546
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	192, 227, 556
XapI	RAATTY	1 cut(s)	318
XceI	RCATGY	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	2 cut(s)	8, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.