Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Forward (+)

26350850 .. 26354923

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAACATCGGTTTCTTAGCTTCAAAAAACATAAATATCTGGAAAACTTGGAACACTATCAAAATCTTGCAAAGGGTCAAGCACCAAAGTTCTTGGTGATTGGTTGTGCAGATTCTAGGGTCTGTCCCTCAACCATTCTGGGATTCCAGCCAGGAGAAGCATTTATGGTGCGCAACATTGCAAATTTGGTACCCCCATTTGAGAGTGGACCCTCAGAAACAAATGCTGCCCTAGAATTTTCTGTAAAATCTCTTGAAGTCGAAAACATATTGGTTGTTGGTCACAGCTGTTGTGGAGGCATTCGTGCTCTTATGAGTATGAATGATGAAATAGACAAAAGTAGCTTTATCCAAAGTTGGGTTGTCAATGGGAAGGATGCAAGGTTGTGGACAAAGGCTGCTGCCTCCAAGCTCAGCTTTGACCAGCAATGCAAACACTGTGAGAAGGAATCAGTCAACCGTTCGTTGTTAAGCCTACTCACTTACCCTTGGATAGAAGAAAAGGTGAAGAAAGGCATTCTTTCTGTACATGGTGGTTATTATGATTTTGTTGACTGTACATTTGAGAAATGGACACTCGATTACAAGGAAGACAATTTGAAAGAGAAAAATGGCAGAATCTCAGTTAAAAATCATTTACTTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

216

Amino Acids

24.51

Weight (kDa)

8.4

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	32 - 185	3.1e-42	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	184, 236
AfaI	GTAC	3 cut(s)	192, 528, 559
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	25, 257, 601
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	6 cut(s)	21, 288, 345, 412, 417, 648
AluI	AGCT	6 cut(s)	21, 288, 345, 412, 417, 648
Alw21I	GWGCWC	1 cut(s)	310
ApeKI	GCWGC	3 cut(s)	227, 398, 401
ApoI	RAATTY	2 cut(s)	184, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp718I	GGTACC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	109, 517
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	214, 385, 388
BciT130I	CCWGG	1 cut(s)	153
BfaI	CTAG	2 cut(s)	117, 233
BisI	GCNGC	3 cut(s)	228, 399, 402
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	3 cut(s)	229, 400, 403
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	192, 211
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	177, 434
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	2 cut(s)	177, 434
BseMII	CTCAG	3 cut(s)	228, 427, 636
BseXI	GCAGC	3 cut(s)	214, 385, 388
BsgI	GTGCAG	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	2 cut(s)	300, 516
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	2 cut(s)	526, 557
Bsp1720I	GCTNAGC	1 cut(s)	413
BspCNI	CTCAG	3 cut(s)	227, 426, 635
BspLI	GGNNCC	2 cut(s)	192, 211
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	177, 434
BsrGI	TGTACA	2 cut(s)	526, 557
BssECI	CCNNGG	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	440, 461, 557
BstAUI	TGTACA	2 cut(s)	526, 557
BstDEI	CTNAG	4 cut(s)	17, 214, 413, 622
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	214, 385, 388
BstV2I	GAAGAC	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	436
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	191, 527, 558
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	9 cut(s)	21, 151, 288, 345, 398, 412, 417, 474, 648
CviKI_1	RGCY	9 cut(s)	21, 151, 288, 345, 398, 412, 417, 474, 648
CviQI	GTAC	3 cut(s)	191, 527, 558
DdeI	CTNAG	4 cut(s)	17, 214, 413, 622
Eco130I	CCWWGG	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	1 cut(s)	533
FaiI	YATR	7 cut(s)	33, 167, 269, 314, 320, 531, 543
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 504, 536
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	228, 399, 402
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	228, 399, 402
FspBI	CTAG	2 cut(s)	117, 233
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	3 cut(s)	228, 399, 402
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	457, 553
HindII	GTYRAC	2 cut(s)	457, 553
HinfI	GANTC	4 cut(s)	113, 144, 449, 618
HphI	GGTGA	2 cut(s)	109, 517
Hpy166II	GTNNAC	4 cut(s)	209, 390, 457, 553
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	41, 254
Hpy8I	GTNNAC	4 cut(s)	209, 390, 457, 553
HpyAV	CCTTC	2 cut(s)	367, 439
HpyCH4III	ACNGT	3 cut(s)	440, 461, 557
HpyCH4V	TGCA	5 cut(s)	71, 110, 182, 380, 432
HpyF3I	CTNAG	4 cut(s)	17, 214, 413, 622
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	645
LpnPI	CCDG	6 cut(s)	26, 125, 138, 161, 165, 437
Lsp1109I	GCAGC	3 cut(s)	214, 385, 388
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	117, 233
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	3 cut(s)	509, 520, 602
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	184, 236, 595
MnlI	CCTC	4 cut(s)	139, 223, 290, 415
MseI	TTAA	2 cut(s)	470, 627
MspA1I	CMGCKG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	2 cut(s)	300, 516
MvaI	CCWGG	1 cut(s)	153
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	192, 211
NmuCI	GTSAC	1 cut(s)	281
NsbI	TGCGCA	1 cut(s)	173
PctI	GAATGC	2 cut(s)	300, 516
PfeI	GAWTC	4 cut(s)	113, 144, 449, 618
PkrI	GCNGC	3 cut(s)	229, 400, 403
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	192, 211
PspPI	GGNCC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	3 cut(s)	192, 528, 559
RsaNI	GTAC	3 cut(s)	191, 527, 558
SaqAI	TTAA	2 cut(s)	470, 627
SatI	GCNGC	3 cut(s)	228, 399, 402
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	23, 290, 347, 386, 414, 419, 507, 650
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	184, 236, 595
SspMI	CTAG	2 cut(s)	117, 233
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	440, 461, 557
TaqI	TCGA	2 cut(s)	261, 579
TasI	AATT	3 cut(s)	184, 236, 595
TatI	WGTACW	2 cut(s)	526, 557
TfiI	GAWTC	4 cut(s)	113, 144, 449, 618
Tru1I	TTAA	2 cut(s)	470, 627
Tru9I	TTAA	2 cut(s)	470, 627
TscAI	CASTG	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	227, 398, 401
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 335, 342
TspRI	CASTG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	2 cut(s)	184, 236
XspI	CTAG	2 cut(s)	117, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.