Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

8064828 .. 8068118

Gene Structure 3291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1047300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGATCTTGCGCCAACCTCTGTTTTAAATGACTCAATTTCCAATCCCTCCTCCTCGGACACACGACAAATCTTTGGTTCTAATCTGAAATCAGGAAAAGTTCAGCCGACCCAATTGAGATTGTTAACTACTTCCGACAATTGTCCAGGTTTGACTGTAAAGGCTTCAAGAGAGTCCTTAGGGATCACTGAACAACATAAAAACAACAAACTGGAGAGAGTAGCTGAAACGGATGATCGGAGCGAATTGTTTGAGGATATGAAACAACGGTTTGTTGACTTCAAAAAGCATAAATACATGGAAAACTTGGAACATTATCAAAATCTTGCAAAGTGTCAAGCGCCAAAGTTCATGGTCATCTCTTGTGCAGATTCTAGGGTATGCCCCTCGACCATTCTGGGATTTCAACCGGGAGAAGCATTTGTAGTGCGCAACATTGCGAATTTGGTGCCCCCCTTTGAGAGTGGACCCTCAGAAACAAATGCTGCATTGGAATTTTCTGTGAATTTTCTGAAAATCGAAAACATATTGGTCGTTGGTCACAGCTGCTGTGGAGGCATTCGTGCTCTTATGGGCATGGATGATGAAGTTGATAAAAGCTTTATCCAAAATTGGGTTGTTGTTGGGAAGGATGCAAGGTCGTGGACAAAAGCTGCTGCCTCCAAACTCAGTTTTGACCAGCAGTGCAAACATTGTGAGAAGGAATCAATCAACCGTTCATTGTTGAACCTGCTCACGTACCCATGGATAGAAGAAAAAGTGAAGAAAGGTGTTCTTGCTGTTCATGGTGGTTATTATGACTTTGTTGAATGTACATTTGAGAAATGGACGCTCGATTATAAGGAAGACAACTTGAAGGAGAAACATGGCAGAATTTCAGTTAAAAATCATTTGTTTTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

303

Amino Acids

34.08

Weight (kDa)

6.71

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	119 - 270	1.9e-41	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
Acc16I	TGCGCA	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	451
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	4 cut(s)	445, 497, 508, 876
AfaI	GTAC	2 cut(s)	743, 817
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	6 cut(s)	171, 286, 410, 730, 812, 859
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	4 cut(s)	227, 549, 603, 656
AluI	AGCT	4 cut(s)	227, 549, 603, 656
Alw21I	GWGCWC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	488, 549, 656, 659
ApoI	RAATTY	4 cut(s)	445, 497, 508, 876
AspLEI	GCGC	3 cut(s)	16, 346, 435
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	4 cut(s)	475, 536, 643, 646
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	741
BisI	GCNGC	4 cut(s)	489, 550, 657, 660
BlsI	GCNGC	4 cut(s)	490, 551, 658, 661
Bme1390I	CCNGG	2 cut(s)	150, 414
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	453, 472
BmrFI	CCNGG	2 cut(s)	150, 414
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	57, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	219
Bse21I	CCTNAGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	57, 746
BseGI	GGATG	3 cut(s)	241, 589, 640
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	489, 685
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	2 cut(s)	43, 46
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	4 cut(s)	475, 536, 643, 646
BsgI	GTGCAG	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmI	GAATGC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	456, 571
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	3 cut(s)	7, 186, 238
Bsp19I	CCATGG	1 cut(s)	746
BspCNI	CTCAG	2 cut(s)	488, 684
BspLI	GGNNCC	2 cut(s)	453, 472
BspMI	ACCTGC	1 cut(s)	741
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	57, 746
BssMI	GATC	3 cut(s)	7, 186, 238
BssT1I	CCWWGG	1 cut(s)	746
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	160, 273, 719
BstAUI	TGTACA	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	741
BstDEI	CTNAG	3 cut(s)	181, 475, 671
BstDSI	CCRYGG	1 cut(s)	746
BstF5I	GGATG	3 cut(s)	241, 589, 640
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	3 cut(s)	16, 346, 435
BstKTI	GATC	3 cut(s)	10, 189, 241
BstMBI	GATC	3 cut(s)	7, 186, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 558
BstNI	CCWGG	1 cut(s)	150
BstPAI	GACNNNNGTC	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	148, 412
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	4 cut(s)	475, 536, 643, 646
BstV2I	GAAGAC	1 cut(s)	855
Bsu36I	CCTNAGG	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	241, 589, 640
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	2 cut(s)	189, 692
BveI	ACCTGC	1 cut(s)	741
CaiI	CAGNNNCTG	1 cut(s)	552
CfoI	GCGC	3 cut(s)	16, 346, 435
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	742, 816
CviAII	CATG	6 cut(s)	301, 355, 580, 747, 788, 869
CviJI	RGCY	7 cut(s)	5, 109, 167, 227, 549, 603, 656
CviKI_1	RGCY	7 cut(s)	5, 109, 167, 227, 549, 603, 656
CviQI	GTAC	2 cut(s)	742, 816
DdeI	CTNAG	3 cut(s)	181, 475, 671
DpnI	GATC	3 cut(s)	9, 188, 240
DpnII	GATC	3 cut(s)	7, 186, 238
DraI	TTTAAA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	746
FaeI	CATG	6 cut(s)	304, 358, 583, 750, 791, 872
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FatI	CATG	6 cut(s)	300, 354, 579, 746, 787, 868
Fnu4HI	GCNGC	4 cut(s)	489, 550, 657, 660
FokI	GGATG	3 cut(s)	248, 596, 647
Fsp4HI	GCNGC	4 cut(s)	489, 550, 657, 660
FspBI	CTAG	1 cut(s)	378
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	3 cut(s)	15, 345, 434
GluI	GCNGC	4 cut(s)	489, 550, 657, 660
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	347
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	3 cut(s)	16, 346, 435
Hin1II	CATG	6 cut(s)	304, 358, 583, 750, 791, 872
Hin6I	GCGC	3 cut(s)	14, 344, 433
HinP1I	GCGC	3 cut(s)	14, 344, 433
HincII	GTYRAC	2 cut(s)	129, 280
HindII	GTYRAC	2 cut(s)	129, 280
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	4 cut(s)	35, 176, 374, 707
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	413
Hpy166II	GTNNAC	4 cut(s)	129, 280, 470, 648
Hpy188I	TCNGA	6 cut(s)	61, 90, 139, 243, 478, 516
Hpy188III	TCNNGA	3 cut(s)	96, 171, 906
Hpy8I	GTNNAC	4 cut(s)	129, 280, 470, 648
HpyAV	CCTTC	3 cut(s)	625, 697, 853
HpyCH4III	ACNGT	3 cut(s)	160, 273, 719
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	5 cut(s)	332, 371, 491, 638, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 558
HpyF3I	CTNAG	3 cut(s)	181, 475, 671
HpySE526I	ACGT	1 cut(s)	740
Hsp92II	CATG	6 cut(s)	304, 358, 583, 750, 791, 872
HspAI	GCGC	3 cut(s)	14, 344, 433
KspAI	GTTAAC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	7, 186, 238
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	8 cut(s)	81, 135, 162, 200, 386, 426, 695, 746
Lsp1109I	GCAGC	4 cut(s)	475, 536, 643, 646
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	3 cut(s)	9, 188, 240
MboI	GATC	3 cut(s)	7, 186, 238
MboII	GAAGA	3 cut(s)	767, 778, 860
MfeI	CAATTG	2 cut(s)	116, 142
MhlI	GDGCHC	2 cut(s)	456, 571
MluCI	AATT	9 cut(s)	39, 116, 142, 248, 445, 497, 508, 613, 876
MlyI	GAGTC	2 cut(s)	29, 185
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	31, 61, 64, 67, 250, 400, 484, 551, 673
MseI	TTAA	3 cut(s)	29, 128, 885
MspA1I	CMGCKG	1 cut(s)	549
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	150, 414
MunI	CAATTG	2 cut(s)	116, 142
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	11, 558
NciI	CCSGG	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	746
NdeII	GATC	3 cut(s)	7, 186, 238
NlaIII	CATG	6 cut(s)	304, 358, 583, 750, 791, 872
NlaIV	GGNNCC	2 cut(s)	453, 472
NmuCI	GTSAC	1 cut(s)	542
NsbI	TGCGCA	1 cut(s)	434
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	374, 707
PkrI	GCNGC	4 cut(s)	490, 551, 658, 661
PleI	GAGTC	2 cut(s)	29, 184
PpsI	GAGTC	2 cut(s)	29, 184
Ppu21I	YACGTR	1 cut(s)	741
PshAI	GACNNNNGTC	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	453, 472
PspPI	GGNCC	1 cut(s)	470
PstNI	CAGNNNCTG	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	549
RsaI	GTAC	2 cut(s)	743, 817
RsaNI	GTAC	2 cut(s)	742, 816
SaqAI	TTAA	3 cut(s)	29, 128, 885
SatI	GCNGC	4 cut(s)	489, 550, 657, 660
Sau3AI	GATC	3 cut(s)	7, 186, 238
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	2 cut(s)	29, 185
ScrFI	CCNGG	2 cut(s)	150, 414
SduI	GDGCHC	2 cut(s)	456, 571
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	1 cut(s)	470
Sse9I	AATT	9 cut(s)	39, 116, 142, 248, 445, 497, 508, 613, 876
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	148, 412
StyI	CCWWGG	1 cut(s)	746
TaaI	ACNGT	3 cut(s)	160, 273, 719
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	3 cut(s)	392, 522, 837
TasI	AATT	9 cut(s)	39, 116, 142, 248, 445, 497, 508, 613, 876
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	2 cut(s)	374, 707
Tru1I	TTAA	3 cut(s)	29, 128, 885
Tru9I	TTAA	3 cut(s)	29, 128, 885
TscAI	CASTG	2 cut(s)	196, 692
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	4 cut(s)	488, 549, 656, 659
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	278, 343, 603, 711, 776
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	196, 692
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	4 cut(s)	445, 497, 508, 876
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.