Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

16990352 .. 16992796

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCTTTTTCTTTATTGTATTCACGTTTATTTATTTATCAAATAAATCGTTTCTTGAAATACTTGTTTGCCAAACTCATCTTTTGGAGCTTCCAACAAATGCTGAAGGCGGGAAGAGAGATGGTGTGGCCAATCCCCTCAAAATTAGCTCGTTGGATGATTCCAACACTGGTTTGTAGAGACTCGTTTGGCTGCTGCTCACTCGTTTCTGGTTTAACCAATTCCTCTCTGGCTCAAATTCCCAGAAAATCATCTGTTCCAAACAAGACAAATTCTGCACAAGTTGAAGGCATCCCCGTCCAATTTCCGCCTTCGATCAAAAACAACCTGGTTCTGAGGCCGGAGGCATCAAATGATTCCGAGGATCTCGCTGGTGAATTTACAAAATTTAAAGTAGAAAATGTATCGAAAGCTAAGGACGGGATGGACTCGTTTGTAGCGATGAAAGAGAGGTTTCTGAGTTTTAAAAGGCACAAATTTTTGAAAGAGTCAGAGCATTTCCAAACCCTAGCTCAAGTACAAGCACCCAAGTTCATGGTGATTGCTTGTGCAGACTCTAGGGTTTGTCCCTCTAATATCCTAGGGTTTCAACCAGGGGAAGCTTTCATGGTTAGAAATGTAGCAAACCTTGTCCCCCCATTTGAGTATGGAACATCAGAAACTAATGCCGCCCTTGAGTTCGCAGTAAATACTCTTCAAGTTGAAAACATATTAGTCATTGGCCACAGTAGCTGTGCAGGAATTCAGACCCTATTGAGAATGCAAGATGACGGTGATTCGAGTAGCTTTACTCAAAGTTGGGTTAACAATGCGAAAATCGCCAAACTAAGAACAAAATCTATTGCACAGCACCTCAGCTTTGAACAACAGTGCAGGCACTGTGAGAAGGAATCGATCAATCGTTCATTGTTGAATCTTCGGACGTACCCATGGATAGAAAACAAAGCAAAGAAAGAGTTGATCTGTCTACATGGAGGATATTACGATTTTTCGAGTTGTACATTTGAGAAATGGAGCCTTGATATAAATGGCAGCAGCAGCTTTGTAGGAGGCAGATACTTGATCAAAGACGAAGCACTTTGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

363

Amino Acids

41.07

Weight (kDa)

9.08

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	179 - 332	5e-40	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	967
AciI	CCGC	3 cut(s)	110, 308, 669
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	128, 721
AcsI	RAATTY	6 cut(s)	237, 271, 377, 386, 476, 741
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	3 cut(s)	519, 926, 1000
AgsI	TTSAA	8 cut(s)	58, 287, 484, 590, 698, 704, 863, 913
AjnI	CCWGG	2 cut(s)	327, 592
AluBI	AGCT	9 cut(s)	90, 149, 413, 512, 602, 732, 786, 858, 1041
AluI	AGCT	9 cut(s)	90, 149, 413, 512, 602, 732, 786, 858, 1041
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	372
AlwNI	CAGNNNCTG	2 cut(s)	732, 879
AoxI	GGCC	3 cut(s)	128, 338, 721
ApeKI	GCWGC	5 cut(s)	192, 195, 1032, 1035, 1038
ApoI	RAATTY	6 cut(s)	237, 271, 377, 386, 476, 741
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	1086
AsuHPI	GGTGA	3 cut(s)	386, 550, 785
AvrII	CCTAGG	1 cut(s)	580
BalI	TGGCCA	2 cut(s)	130, 723
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BbvCI	CCTCAGC	1 cut(s)	854
BbvI	GCAGC	5 cut(s)	179, 182, 1044, 1047, 1050
BccI	CCATC	2 cut(s)	115, 418
BciT130I	CCWGG	2 cut(s)	329, 594
BclI	TGATCA	1 cut(s)	1062
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	509, 558, 581
BfoI	RGCGCY	1 cut(s)	1087
BisI	GCNGC	6 cut(s)	193, 196, 669, 1033, 1036, 1039
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	6 cut(s)	194, 197, 670, 1034, 1037, 1040
Bme1390I	CCNGG	2 cut(s)	329, 594
BmiI	GGNNCC	1 cut(s)	1016
BmrFI	CCNGG	2 cut(s)	329, 594
BmsI	GCATC	2 cut(s)	300, 356
Bpu10I	CCTNAGC	2 cut(s)	414, 854
BpuEI	CTTGAG	2 cut(s)	498, 695
Bsa29I	ATCGAT	1 cut(s)	893
BsaJI	CCNNGG	4 cut(s)	360, 580, 593, 929
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	329, 594
BseCI	ATCGAT	1 cut(s)	893
BseDI	CCNNGG	4 cut(s)	360, 580, 593, 929
BseGI	GGATG	3 cut(s)	162, 291, 429
BseMII	CTCAG	3 cut(s)	326, 449, 868
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	5 cut(s)	179, 182, 1044, 1047, 1050
BsgI	GTGCAG	4 cut(s)	261, 570, 756, 892
BshFI	GGCC	3 cut(s)	130, 340, 723
BshVI	ATCGAT	1 cut(s)	893
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	552, 617
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	552, 617
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	130, 340, 723
Bsp1407I	TGTACA	1 cut(s)	998
Bsp143I	GATC	5 cut(s)	315, 364, 894, 960, 1062
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	3 cut(s)	110, 308, 669
BspANI	GGCC	3 cut(s)	130, 340, 723
BspCNI	CTCAG	3 cut(s)	327, 450, 867
BspDI	ATCGAT	1 cut(s)	893
BspLI	GGNNCC	1 cut(s)	1016
BspPI	GGATC	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	998
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	4 cut(s)	360, 580, 593, 929
BssMI	GATC	5 cut(s)	315, 364, 894, 960, 1062
BssT1I	CCWWGG	2 cut(s)	580, 929
Bst2UI	CCWGG	2 cut(s)	329, 594
Bst4CI	ACNGT	4 cut(s)	728, 773, 870, 881
Bst6I	CTCTTC	2 cut(s)	109, 699
BstAUI	TGTACA	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	875
BstDEI	CTNAG	5 cut(s)	335, 414, 458, 827, 854
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	3 cut(s)	162, 291, 429
BstH2I	RGCGCY	1 cut(s)	1087
BstHHI	GCGC	1 cut(s)	1086
BstKTI	GATC	5 cut(s)	318, 367, 897, 963, 1065
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	5 cut(s)	315, 364, 894, 960, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	729, 818, 1038
BstNI	CCWGG	2 cut(s)	329, 594
BstSCI	CCNGG	2 cut(s)	327, 592
BstV1I	GCAGC	5 cut(s)	179, 182, 1044, 1047, 1050
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	893
BsuRI	GGCC	3 cut(s)	130, 340, 723
BsuTUI	ATCGAT	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	929
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	162, 291, 429
BtsIMutI	CAGTG	3 cut(s)	167, 875, 877
Cac8I	GCNNGC	1 cut(s)	875
CaiI	CAGNNNCTG	2 cut(s)	732, 879
CfoI	GCGC	1 cut(s)	1086
ClaI	ATCGAT	1 cut(s)	893
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	518, 925, 999
CviAII	CATG	4 cut(s)	535, 607, 930, 971
CviQI	GTAC	3 cut(s)	518, 925, 999
DdeI	CTNAG	5 cut(s)	335, 414, 458, 827, 854
DpnI	GATC	5 cut(s)	317, 366, 896, 962, 1064
DpnII	GATC	5 cut(s)	315, 364, 894, 960, 1062
DraI	TTTAAA	2 cut(s)	391, 466
EaeI	YGGCCR	2 cut(s)	128, 721
Eam1104I	CTCTTC	2 cut(s)	109, 699
EarI	CTCTTC	2 cut(s)	109, 699
EciI	GGCGGA	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	580, 929
Eco57I	CTGAAG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	327, 592
EcoT14I	CCWWGG	2 cut(s)	580, 929
ErhI	CCWWGG	2 cut(s)	580, 929
FaeI	CATG	4 cut(s)	538, 610, 933, 974
FaiI	YATR	7 cut(s)	536, 608, 648, 710, 931, 972, 1025
FaqI	GGGAC	2 cut(s)	552, 617
FatI	CATG	4 cut(s)	534, 606, 929, 970
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	1062
FblI	GTMKAC	1 cut(s)	967
Fnu4HI	GCNGC	6 cut(s)	193, 196, 669, 1033, 1036, 1039
FokI	GGATG	3 cut(s)	169, 278, 436
Fsp4HI	GCNGC	6 cut(s)	193, 196, 669, 1033, 1036, 1039
FspBI	CTAG	3 cut(s)	509, 558, 581
GlaI	GCGC	1 cut(s)	1085
GluI	GCNGC	6 cut(s)	193, 196, 669, 1033, 1036, 1039
HaeII	RGCGCY	1 cut(s)	1087
HaeIII	GGCC	3 cut(s)	130, 340, 723
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	1086
Hin1II	CATG	4 cut(s)	538, 610, 933, 974
Hin6I	GCGC	1 cut(s)	1084
HinP1I	GCGC	1 cut(s)	1084
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	9 cut(s)	160, 182, 356, 428, 488, 554, 776, 890, 913
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	3 cut(s)	386, 550, 785
Hpy166II	GTNNAC	2 cut(s)	805, 968
Hpy188I	TCNGA	7 cut(s)	336, 361, 459, 493, 658, 747, 921
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	805, 968
HpyAV	CCTTC	4 cut(s)	100, 281, 321, 880
HpyCH4III	ACNGT	4 cut(s)	728, 773, 870, 881
HpyCH4IV	ACGT	2 cut(s)	25, 923
HpyCH4V	TGCA	6 cut(s)	278, 551, 737, 763, 845, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	729, 818, 1038
HpyF3I	CTNAG	5 cut(s)	335, 414, 458, 827, 854
HpySE526I	ACGT	2 cut(s)	25, 923
Hsp92II	CATG	4 cut(s)	538, 610, 933, 974
HspAI	GCGC	1 cut(s)	1084
Ksp22I	TGATCA	1 cut(s)	1062
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	315, 364, 894, 960, 1062
LmnI	GCTCC	2 cut(s)	87, 1014
Lsp1109I	GCAGC	5 cut(s)	179, 182, 1044, 1047, 1050
LweI	GCATC	2 cut(s)	300, 356
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	3 cut(s)	509, 558, 581
MaeII	ACGT	2 cut(s)	25, 923
MalI	GATC	5 cut(s)	317, 366, 896, 962, 1064
MboI	GATC	5 cut(s)	315, 364, 894, 960, 1062
MboII	GAAGA	3 cut(s)	126, 686, 908
MflI	RGATCY	1 cut(s)	364
MlsI	TGGCCA	2 cut(s)	130, 723
MluCI	AATT	9 cut(s)	143, 220, 237, 271, 302, 377, 386, 476, 741
MluNI	TGGCCA	2 cut(s)	130, 723
MlyI	GAGTC	4 cut(s)	176, 422, 497, 548
MmeI	TCCRAC	3 cut(s)	118, 134, 188
Mox20I	TGGCCA	2 cut(s)	130, 723
MscI	TGGCCA	2 cut(s)	130, 723
MseI	TTAA	4 cut(s)	215, 390, 465, 804
Msp20I	TGGCCA	2 cut(s)	130, 723
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	329, 594
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	329, 594
MwoI	GCNNNNNNNGC	3 cut(s)	729, 818, 1038
NcoI	CCATGG	1 cut(s)	929
NdeII	GATC	5 cut(s)	315, 364, 894, 960, 1062
NlaIII	CATG	4 cut(s)	538, 610, 933, 974
NlaIV	GGNNCC	1 cut(s)	1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	5 cut(s)	160, 356, 776, 890, 913
PkrI	GCNGC	6 cut(s)	194, 197, 670, 1034, 1037, 1040
PleI	GAGTC	4 cut(s)	176, 422, 496, 548
PpsI	GAGTC	4 cut(s)	176, 422, 496, 548
Psp6I	CCWGG	2 cut(s)	327, 592
PspGI	CCWGG	2 cut(s)	327, 592
PspN4I	GGNNCC	1 cut(s)	1016
PstNI	CAGNNNCTG	2 cut(s)	732, 879
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	519, 926, 1000
RsaNI	GTAC	3 cut(s)	518, 925, 999
SaqAI	TTAA	4 cut(s)	215, 390, 465, 804
SatI	GCNGC	6 cut(s)	193, 196, 669, 1033, 1036, 1039
Sau3AI	GATC	5 cut(s)	315, 364, 894, 960, 1062
SchI	GAGTC	4 cut(s)	176, 422, 497, 548
ScrFI	CCNGG	2 cut(s)	329, 594
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	300, 356
SmlI	CTYRAG	2 cut(s)	513, 674
SmoI	CTYRAG	2 cut(s)	513, 674
Sse9I	AATT	9 cut(s)	143, 220, 237, 271, 302, 377, 386, 476, 741
SsiI	CCGC	3 cut(s)	110, 308, 669
SspMI	CTAG	3 cut(s)	509, 558, 581
StyD4I	CCNGG	2 cut(s)	327, 592
StyI	CCWWGG	2 cut(s)	580, 929
TaaI	ACNGT	4 cut(s)	728, 773, 870, 881
TaiI	ACGT	2 cut(s)	28, 926
TaqI	TCGA	5 cut(s)	314, 407, 779, 893, 992
TasI	AATT	9 cut(s)	143, 220, 237, 271, 302, 377, 386, 476, 741
TatI	WGTACW	2 cut(s)	517, 998
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	5 cut(s)	160, 356, 776, 890, 913
Tru1I	TTAA	4 cut(s)	215, 390, 465, 804
Tru9I	TTAA	4 cut(s)	215, 390, 465, 804
TscAI	CASTG	3 cut(s)	174, 875, 884
TseI	GCWGC	5 cut(s)	192, 195, 1032, 1035, 1038
TspDTI	ATGAA	4 cut(s)	458, 523, 595, 894
TspRI	CASTG	3 cut(s)	174, 875, 884
XapI	RAATTY	6 cut(s)	237, 271, 377, 386, 476, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmaJI	CCTAGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	967
XspI	CTAG	3 cut(s)	509, 558, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.