Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001103

Physical Location & Seq

Genomic Coordinates Reverse (-)

4371060 .. 4373848

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04100.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGTTCTCACGCCAACCTCTGTCTCAAAAGACTCAATCTCCAATTCCTCCTCCTCCTCGGATTTTCACAGAATCCCATTCAACACACGAACAATCTTTGGTTCTAAGCTGCAGTCAGGAAAAATTCAGCCGACCCAATTAAGATTACTGACTACTTCCGACAGTTGTCCAGGTTTGACTGTAAAGGCTTCAAGAGAGTCCTTAGGATCGATCACTGAACAACATAAAAACAACAAACTGGAGAGAGTAGCTGAAACTGATGATCGGAGCGAATTGTTTGAGGATATGAAACAACGGTTTCTTGACTTCAAAAAACATAAATACATGGAAAACTTGGAACATTATCAAAACCTTGCAAAGGGTCAAGCGCCAAAGTTCATGGTCATTTCTTGTGCAGATTCTAGGGTATGCCCCTCAACCATTCTGGGATTCCAACCGGGAGAAGCATTTATAGTGCGCAACATTGCGAATTTGGTGCCCTCCTTTGAGAGTGGACCCTCAGAAACAAATGCTGCATTGGAATTCTCTGTGAATTCTCTGAAAGTCGAAAACATATTGGTTGTTGGTCACAGCTGCTGTGGAGGCATTCGTGCTCTTATGGGCATGGATGATGAAATAGAGAAAAGTAGCTTTATCCAAAATTGGGTTGTTGTTGGGAAGGATGCAAGGTCGTGGACAAAGGCTGCTGCCTCCACGCTCAGTTTTGACCAGCAGTGCAAACATTGTGAGAAGGAATCAATCAACCGTTCCTTGTTGAACCTGCTCACGTATCCGTGGATAGAAGAAAAAGTGAAGAAAGGTGTTCTTGCTGTACATGGTGGTTATTATGACTTTGTTGACTGTTCATTTGAGAAATGGACGCTCGATTATAAGGAAGGCAACTTGAAGGAGAAACATGGCAGAATTTCAGTCAAAAATCATTTGTTTTGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

313

Amino Acids

35.03

Weight (kDa)

8.05

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33580 AT4G33580 AT4G33580
fragaria_vesca	FvH4_2g11680 FvH4_2g11680 FvH4_2g11680 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470 FvH4_5g35470
malus_domestica	MD05G1047300.v1.1 MD08G1196500.v1.1 MD10G1054100.v1.1
prunus_persica	Prupe.1G530700_v2.0.a1 Prupe.1G530700_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1 Prupe.8G068900_v2.0.a1
pyrus_communis	pycom05g03920 pycom08g16890 pycom10g04100
rosa_chinensis	RchiOBHm_Chr6g0271121 RchiOBHm_Chr7g0236851
rosa_laevigata	RLG00000001056 RLG00000013744
rosa_multiflora	Rmu_sc0002867.1_g000014 Rmu_sc0005953.1_g000013 Rmu_sc0008851.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224760 Rroxscaffold_7G00197290
rosa_rugosa	Rorug06G0058700 Rorug06G0058700 Rorug06G0058800 Rorug06G0058900 Rorug06G0058900 Rorug07G0299900 Rorug07G0300000 Rorug07G0300100
rosa_samantha	Rh6AG178400 Rh6BG182000 Rh6CG177600 Rh6DG169600 Rh7AG455100 Rh7BG426300 Rh7CG473800 Rh7DG443100
rosa_wichuraiana	Rw6G015240 Rw7G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
Acc16I	TGCGCA	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	771
AccB1I	GGYRCC	1 cut(s)	478
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	5 cut(s)	126, 472, 524, 535, 906
AfaI	GTAC	1 cut(s)	816
AfiI	CCNNNNNNNGG	2 cut(s)	361, 646
AgsI	TTSAA	5 cut(s)	85, 195, 313, 760, 889
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	112, 254, 576, 633
AluI	AGCT	4 cut(s)	112, 254, 576, 633
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	579
ApeKI	GCWGC	5 cut(s)	112, 515, 576, 686, 689
ApoI	RAATTY	5 cut(s)	126, 472, 524, 535, 906
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
AspLEI	GCGC	2 cut(s)	373, 462
AspS9I	GGNCC	2 cut(s)	497, 933
AsuC2I	CCSGG	1 cut(s)	441
AvaII	GGWCC	2 cut(s)	497, 933
AxyI	CCTNAGG	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	5 cut(s)	99, 502, 563, 673, 676
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	783
BisI	GCNGC	5 cut(s)	113, 516, 577, 687, 690
BlsI	GCNGC	5 cut(s)	114, 517, 578, 688, 691
Bme1390I	CCNGG	2 cut(s)	174, 441
Bme18I	GGWCC	2 cut(s)	497, 933
BmgT120I	GGNCC	2 cut(s)	497, 933
BmiI	GGNNCC	2 cut(s)	480, 499
BmrFI	CCNGG	2 cut(s)	174, 441
BmsI	GCATC	1 cut(s)	655
BoxI	GACNNNNGTC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	60, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 646
Bse1I	ACTGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	60, 776
BseGI	GGATG	2 cut(s)	616, 670
BseLI	CCNNNNNNNGG	2 cut(s)	361, 646
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	516, 715
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	3 cut(s)	43, 46, 49
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	5 cut(s)	99, 502, 563, 673, 676
BsgI	GTGCAG	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	361, 646
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	483, 598
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	3 cut(s)	209, 213, 265
BspCNI	CTCAG	2 cut(s)	515, 714
BspDI	ATCGAT	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	480, 499
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	60, 776
BssMI	GATC	3 cut(s)	209, 213, 265
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	5 cut(s)	167, 184, 300, 749, 845
BstAUI	TGTACA	1 cut(s)	814
BstBAI	YACGTR	1 cut(s)	771
BstDEI	CTNAG	4 cut(s)	108, 205, 502, 701
BstDSI	CCRYGG	1 cut(s)	776
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	616, 670
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	2 cut(s)	373, 462
BstKTI	GATC	3 cut(s)	212, 216, 268
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	209, 213, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	585
BstNI	CCWGG	1 cut(s)	174
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	172, 439
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	5 cut(s)	99, 502, 563, 673, 676
Bsu15I	ATCGAT	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	783
BsuTUI	ATCGAT	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	776
BtsCI	GGATG	2 cut(s)	616, 670
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	2 cut(s)	216, 722
BveI	ACCTGC	1 cut(s)	771
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	2 cut(s)	373, 462
Cfr13I	GGNCC	2 cut(s)	497, 933
ClaI	ATCGAT	1 cut(s)	212
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	5 cut(s)	328, 382, 607, 818, 899
CviJI	RGCY	8 cut(s)	5, 112, 133, 191, 254, 576, 633, 686
CviKI_1	RGCY	8 cut(s)	5, 112, 133, 191, 254, 576, 633, 686
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	4 cut(s)	108, 205, 502, 701
DpnI	GATC	3 cut(s)	211, 215, 267
DpnII	GATC	3 cut(s)	209, 213, 265
Eco47I	GGWCC	2 cut(s)	497, 933
Eco81I	CCTNAGG	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	524, 535
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	331, 385, 610, 821, 902
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FatI	CATG	5 cut(s)	327, 381, 606, 817, 898
Fnu4HI	GCNGC	5 cut(s)	113, 516, 577, 687, 690
FokI	GGATG	2 cut(s)	623, 677
Fsp4HI	GCNGC	5 cut(s)	113, 516, 577, 687, 690
FspBI	CTAG	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	461
GlaI	GCGC	2 cut(s)	372, 461
GluI	GCNGC	5 cut(s)	113, 516, 577, 687, 690
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	374
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	871
HhaI	GCGC	2 cut(s)	373, 462
Hin1II	CATG	5 cut(s)	331, 385, 610, 821, 902
Hin6I	GCGC	2 cut(s)	371, 460
HinP1I	GCGC	2 cut(s)	371, 460
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	6 cut(s)	35, 75, 200, 401, 432, 737
HpaII	CCGG	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	497, 678, 841
Hpy188I	TCNGA	5 cut(s)	64, 163, 270, 505, 543
Hpy188III	TCNNGA	4 cut(s)	120, 195, 305, 936
Hpy8I	GTNNAC	3 cut(s)	497, 678, 841
HpyAV	CCTTC	4 cut(s)	655, 727, 872, 883
HpyCH4III	ACNGT	5 cut(s)	167, 184, 300, 749, 845
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	6 cut(s)	115, 359, 398, 518, 668, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	585
HpyF3I	CTNAG	4 cut(s)	108, 205, 502, 701
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	5 cut(s)	331, 385, 610, 821, 902
HspAI	GCGC	2 cut(s)	371, 460
Kzo9I	GATC	3 cut(s)	209, 213, 265
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	105, 159, 186, 227, 413, 453, 725, 776
Lsp1109I	GCAGC	5 cut(s)	99, 502, 563, 673, 676
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	3 cut(s)	211, 215, 267
MboI	GATC	3 cut(s)	209, 213, 265
MboII	GAAGA	2 cut(s)	797, 808
MhlI	GDGCHC	2 cut(s)	483, 598
MluCI	AATT	9 cut(s)	46, 126, 140, 275, 472, 524, 535, 643, 906
MlyI	GAGTC	2 cut(s)	29, 209
MmeI	TCCRAC	2 cut(s)	186, 460
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	576
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	174, 441
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	585
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	3 cut(s)	209, 213, 265
NlaIII	CATG	5 cut(s)	331, 385, 610, 821, 902
NlaIV	GGNNCC	2 cut(s)	480, 499
NmuCI	GTSAC	1 cut(s)	569
NsbI	TGCGCA	1 cut(s)	461
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	75, 401, 432, 737
PkrI	GCNGC	5 cut(s)	114, 517, 578, 688, 691
PleI	GAGTC	2 cut(s)	29, 208
PpsI	GAGTC	2 cut(s)	29, 208
Ppu21I	YACGTR	1 cut(s)	771
PshAI	GACNNNNGTC	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	480, 499
PspPI	GGNCC	2 cut(s)	497, 933
PstI	CTGCAG	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	576
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	5 cut(s)	113, 516, 577, 687, 690
Sau3AI	GATC	3 cut(s)	209, 213, 265
Sau96I	GGNCC	2 cut(s)	497, 933
SchI	GAGTC	2 cut(s)	29, 209
ScrFI	CCNGG	2 cut(s)	174, 441
SduI	GDGCHC	2 cut(s)	483, 598
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	497, 933
Sse9I	AATT	9 cut(s)	46, 126, 140, 275, 472, 524, 535, 643, 906
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	172, 439
TaaI	ACNGT	5 cut(s)	167, 184, 300, 749, 845
TaiI	ACGT	1 cut(s)	773
TaqI	TCGA	3 cut(s)	212, 549, 867
TasI	AATT	9 cut(s)	46, 126, 140, 275, 472, 524, 535, 643, 906
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	4 cut(s)	75, 401, 432, 737
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	223, 722
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	5 cut(s)	112, 515, 576, 686, 689
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	305, 370, 630, 837
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	2 cut(s)	223, 722
VpaK11BI	GGWCC	2 cut(s)	497, 933
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	5 cut(s)	126, 472, 524, 535, 906
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.