Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

10676073 .. 10679282

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAATGATGATTTAGACATCGACATTGAAATGCATGAAAATAATGCAAATTTGGTTTTACGAGATCCACAAAAGAAACGTAAAGCTCGCAATAAAGGTAAATGGAAGAATGTCTTGGGGTCAAAAAGGAAAACAAAGAGGAGTGATCAGTCCATGCAACAAGAACGAAATGCAGTACCAGATGATGAGAACACTACATCAGTTTCAAAGAAAAGGAGAGGCTCATCCAAAAGAAAAGACACTGAAGAATCAAACTCAAAAGAACAAAATGTTGTTGTGTTAAATGACAAGACCACTACATCGGTACCAAAAAGAAGAACAACTTCATCTAAAAAAAAAGATGTTAAAGAATCCAACTCAAACATACACGAGATTATTGGCCCTTCAAATCCACATCCATATGGTCAGGAATCATTTGGATTTGGTTATCAAAGCCAACAGAATGTGGCATTCTTATGTACAAGATTTCCAAATCCTGGTGTTCAATCCGTACCTTCAGATTTTTCATATGGAATGCCATCACTAGCTTCTTTTCCTCAAGTCATGCCTTATCGGCCGGATCGGCCACATATCTACCAAGTTGGAGCTTCTAGTTCTCAAGCCATTCCTAATCAAGCACTTGGTTACCAAGTTATTCCCCCAACGTTTGGCGATTACTCACTCATGAATTCGCAGGAAACTGCCCGACCAATACTTGAAGGATCAGCTCGTCAACTAAACTTTGATCCATCAATGTACTGGTACTTGACTGATGAGGCTGCTGCACTTTTCTCATCCGATTTTGAAATAATATCAAATTCTGGAATGAAATGGAATAGCTGCTGGTTAGGCATATTTATACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.74

Weight (kDa)

9.16

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AccB7I	CCANNNNNTGG	2 cut(s)	476, 647
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	4 cut(s)	59, 567, 709, 719
AcoI	YGGCCR	2 cut(s)	554, 563
AcsI	RAATTY	3 cut(s)	49, 667, 796
AcuI	CTGAAG	2 cut(s)	264, 480
AfaI	GTAC	6 cut(s)	177, 306, 460, 492, 737, 743
AfiI	CCNNNNNNNGG	2 cut(s)	476, 647
AgsI	TTSAA	6 cut(s)	29, 207, 387, 485, 698, 785
AjnI	CCWGG	1 cut(s)	475
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	86, 527, 587, 707, 819
AluI	AGCT	5 cut(s)	86, 527, 587, 707, 819
AlwI	GGATC	4 cut(s)	59, 567, 709, 719
AoxI	GGCC	3 cut(s)	379, 554, 563
ApeKI	GCWGC	3 cut(s)	758, 761, 819
ApoI	RAATTY	3 cut(s)	49, 667, 796
Asp700I	GAANNNNTTC	1 cut(s)	322
Asp718I	GGTACC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	745, 748, 806
BccI	CCATC	2 cut(s)	526, 736
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	1 cut(s)	145
BfaI	CTAG	2 cut(s)	524, 591
BglI	GCCNNNNNGGC	2 cut(s)	553, 562
BisI	GCNGC	3 cut(s)	759, 762, 820
BlsI	GCNGC	3 cut(s)	760, 763, 821
Bme1390I	CCNGG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	522, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 647
Bse1I	ACTGG	1 cut(s)	743
BseBI	CCWGG	1 cut(s)	477
BseGI	GGATG	3 cut(s)	224, 394, 773
BseLI	CCNNNNNNNGG	2 cut(s)	476, 647
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	554
BseXI	GCAGC	3 cut(s)	745, 748, 806
BsgI	GTGCAG	1 cut(s)	747
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	381, 556, 565
BshNI	GGYRCC	1 cut(s)	304
BsiEI	CGRYCG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	476, 647
BsmI	GAATGC	2 cut(s)	449, 519
BsnI	GGCC	3 cut(s)	381, 556, 565
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	5 cut(s)	64, 145, 559, 701, 724
BspANI	GGCC	3 cut(s)	381, 556, 565
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	4 cut(s)	59, 567, 709, 719
BspT107I	GGYRCC	1 cut(s)	304
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	743
BssMI	GATC	5 cut(s)	64, 145, 559, 701, 724
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	224, 394, 773
BstKTI	GATC	5 cut(s)	67, 148, 562, 704, 727
BstMBI	GATC	5 cut(s)	64, 145, 559, 701, 724
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 562, 828
BstNI	CCWGG	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	745, 748, 806
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZI	CGGCCG	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	381, 556, 565
BtsCI	GGATG	3 cut(s)	224, 394, 773
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	663
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	6 cut(s)	176, 305, 459, 491, 736, 742
CviAII	CATG	4 cut(s)	35, 154, 544, 664
CviQI	GTAC	6 cut(s)	176, 305, 459, 491, 736, 742
DpnI	GATC	5 cut(s)	66, 147, 561, 703, 726
DpnII	GATC	5 cut(s)	64, 145, 559, 701, 724
EaeI	YGGCCR	2 cut(s)	554, 563
EagI	CGGCCG	1 cut(s)	554
EclXI	CGGCCG	1 cut(s)	554
Eco52I	CGGCCG	1 cut(s)	554
Eco57I	CTGAAG	2 cut(s)	264, 480
Eco91I	GGTNACC	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	36
FaeI	CATG	4 cut(s)	38, 157, 547, 667
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 307, 339
FatI	CATG	4 cut(s)	34, 153, 543, 663
FauNDI	CATATG	2 cut(s)	400, 508
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	759, 762, 820
FokI	GGATG	3 cut(s)	211, 381, 760
Fsp4HI	GCNGC	3 cut(s)	759, 762, 820
FspBI	CTAG	2 cut(s)	524, 591
GluI	GCNGC	3 cut(s)	759, 762, 820
HaeIII	GGCC	3 cut(s)	381, 556, 565
HapII	CCGG	1 cut(s)	557
Hin1II	CATG	4 cut(s)	38, 157, 547, 667
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	3 cut(s)	248, 350, 410
HpaII	CCGG	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	2 cut(s)	499, 778
Hpy188III	TCNNGA	3 cut(s)	407, 664, 801
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	3 cut(s)	393, 504, 692
HpyCH4IV	ACGT	2 cut(s)	79, 644
HpyCH4V	TGCA	5 cut(s)	34, 47, 157, 173, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 562, 828
HpySE526I	ACGT	2 cut(s)	79, 644
Hsp92II	CATG	4 cut(s)	38, 157, 547, 667
KpnI	GGTACC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	64, 145, 559, 701, 724
LmnI	GCTCC	1 cut(s)	584
LpnPI	CCDG	9 cut(s)	192, 392, 462, 489, 570, 659, 724, 786, 808
Lsp1109I	GCAGC	3 cut(s)	745, 748, 806
MaeI	CTAG	2 cut(s)	524, 591
MaeII	ACGT	2 cut(s)	79, 644
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	5 cut(s)	66, 147, 561, 703, 726
MboI	GATC	5 cut(s)	64, 145, 559, 701, 724
MboII	GAAGA	3 cut(s)	118, 257, 327
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	3 cut(s)	49, 667, 796
MmeI	TCCRAC	2 cut(s)	378, 562
MnlI	CCTC	4 cut(s)	132, 212, 546, 748
Mph1103I	ATGCAT	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	281, 345
MslI	CAYNNNNRTG	3 cut(s)	29, 399, 454
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	449, 519
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	553, 562, 828
NdeI	CATATG	2 cut(s)	400, 508
NdeII	GATC	5 cut(s)	64, 145, 559, 701, 724
NlaIII	CATG	4 cut(s)	38, 157, 547, 667
NlaIV	GGNNCC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	36
PagI	TCATGA	1 cut(s)	663
PctI	GAATGC	2 cut(s)	449, 519
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	248, 350, 410
PflMI	CCANNNNNTGG	2 cut(s)	476, 647
PkrI	GCNGC	3 cut(s)	760, 763, 821
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	475
PspEI	GGTNACC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	6 cut(s)	177, 306, 460, 492, 737, 743
RsaNI	GTAC	6 cut(s)	176, 305, 459, 491, 736, 742
RseI	CAYNNNNRTG	3 cut(s)	29, 399, 454
SaqAI	TTAA	2 cut(s)	281, 345
SatI	GCNGC	3 cut(s)	759, 762, 820
Sau3AI	GATC	5 cut(s)	64, 145, 559, 701, 724
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	9 cut(s)	82, 88, 100, 496, 529, 589, 647, 709, 821
SfiI	GGCCNNNNNGGCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	3 cut(s)	29, 399, 454
SmlI	CTYRAG	2 cut(s)	537, 597
SmoI	CTYRAG	2 cut(s)	537, 597
Sse9I	AATT	3 cut(s)	49, 667, 796
SspMI	CTAG	2 cut(s)	524, 591
StyD4I	CCNGG	1 cut(s)	475
TaiI	ACGT	2 cut(s)	82, 647
TaqI	TCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	49, 667, 796
TatI	WGTACW	2 cut(s)	458, 735
TfiI	GAWTC	3 cut(s)	248, 350, 410
Tru1I	TTAA	2 cut(s)	281, 345
Tru9I	TTAA	2 cut(s)	281, 345
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	3 cut(s)	758, 761, 819
TspDTI	ATGAA	6 cut(s)	17, 51, 315, 495, 680, 821
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	2 cut(s)	476, 647
XapI	RAATTY	3 cut(s)	49, 667, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	2 cut(s)	524, 591
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.