Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

70973127 .. 70973516

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG489500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAAAATAAAGACAATGAATCTTGTTATCAGCATTGTAGTAACACTGAGAATGAGCAAAGAGGATGTGAAGATGATGCAATTGATGGTGAGACTAATGAGGAACCTGAATATGATACTCAAGAGGCCAGTAGCGATACTCAAGTGCCCAGTGATGATGAACACGTGGATTCTGGTTTAGAAGGTTTATGTATCTTGGATGGTAAGAAGCAAGTAGGAGATGAGAATATCCCAGTTCTTGGTATGAGTTTTGGAAGTGATCAAGATGCATATGACTATTATAATTCATATGCTAGAGTTGTTAGGTTTAGCGTGCGAAGGCTGAGAAGCAACAAATATAAGCATACTAATGTGACATGGAAGAGAGAATTTTGTTGCTCTTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

129

Amino Acids

14.77

Weight (kDa)

4.39

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	368
AcvI	CACGTG	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BbrPI	CACGTG	1 cut(s)	166
BccI	CCATC	2 cut(s)	80, 194
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	2 cut(s)	144, 227
BmsI	GCATC	2 cut(s)	67, 256
BmuI	ACTGGG	2 cut(s)	144, 227
BpuEI	CTTGAG	2 cut(s)	105, 126
BsaAI	YACGTR	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	129, 150, 233
BseGI	GGATG	2 cut(s)	71, 205
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	39, 314
BseNI	ACTGG	3 cut(s)	129, 150, 233
BseSI	GKGCMC	1 cut(s)	150
BshFI	GGCC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	40, 315
BspLI	GGNNCC	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	129, 150, 233
BssMI	GATC	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	48, 323
BstF5I	GGATG	2 cut(s)	71, 205
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	71, 205
BtsIMutI	CAGTG	2 cut(s)	45, 157
Cac8I	GCNNGC	1 cut(s)	314
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	2 cut(s)	128, 322
CviKI_1	RGCY	2 cut(s)	128, 322
DdeI	CTNAG	2 cut(s)	48, 323
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco72I	CACGTG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	1 cut(s)	360
FatI	CATG	1 cut(s)	356
FauNDI	CATATG	2 cut(s)	271, 289
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	2 cut(s)	78, 212
FspBI	CTAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	360
HinfI	GANTC	2 cut(s)	20, 170
HphI	GGTGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	122, 263
HpyAV	CCTTC	2 cut(s)	176, 312
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	80, 269
HpyF3I	CTNAG	2 cut(s)	48, 323
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	120, 142, 159, 163, 246
LweI	GCATC	2 cut(s)	67, 256
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	41, 352
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	83, 373
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	81, 283, 368
MnlI	CCTC	3 cut(s)	56, 94, 118
Mph1103I	ATGCAT	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	81
NdeI	CATATG	2 cut(s)	271, 289
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	20, 170
PflMI	CCANNNNNTGG	1 cut(s)	239
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	282
PspCI	CACGTG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	109, 168, 187, 308
SfaNI	GCATC	2 cut(s)	67, 256
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	120, 141
SmoI	CTYRAG	2 cut(s)	120, 141
Sse9I	AATT	3 cut(s)	81, 283, 368
SspMI	CTAG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	168
TasI	AATT	3 cut(s)	81, 283, 368
TfiI	GAWTC	2 cut(s)	20, 170
TscAI	CASTG	2 cut(s)	52, 157
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	33, 174, 276
TspRI	CASTG	2 cut(s)	52, 157
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	368
XspI	CTAG	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.