FvH4_3g23921

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002145
Physical Location & Seq
Reverse (-)
17007536 .. 17009756
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23921.t1

Sequence Viewer

Length: 1131 bp
ATGCTTCAGATCAAACTTAATAACGATGGGAAATTTGTCGTCACAAGGTTTGAAGCTGAGCATACACATGATTTTGTTTCTCGATCAAGTTCACATGCCATGAGGTCACAAAGAGGAATAGAGAATGCTCAAGCCGAGAGTGTTGAAGAGTTTGAATCAAGTTGGAAAGATCTACTTGATTATTATGATCTGACAGAAAATGACTGGCTAAAAGACTTGTATGAATTGCGTGAGAAGTGGGCACAAATCTATGGTCGGTCAAATTTTTGTGCAGGTATGAGAACAACACAAAGAAGTGAAAGCATAAACAAGACTTTGAAAAAGTTCTTTTCTAAGAACCTTATTCTGTGTGAATGGGTCGTGGAGGGTGAAGCAGCAAGGTTGTACACAAAAGCCAGTTTCAATTGCTTTCAAGAAGAGTATCAAAAATGTTTGGACTTGATAGTAGAAAGAGGGATTGATGACGTGATAATAGAATCATATGTGGTTCAAAGACCAGGAAATCCAAACTTGAGAAGGTCAGTCACATATTCACCTTCAAATCAGTCAGTTAATTGTAGTTGTAAGAGATTTCAGTTTGAAGGGATTCTTTGTGCACATGTGCTAAAATTATTCCGTGAGTTAGGCTTGTCAACATTACCATCTAAGTACTACTTAAAACGATGGAGACGAGATGCTAGAAAGGGAATTCATTTTTATTGTCATGAGGAAGCAAATTTAAGTGATCGTAGCGCATCTTCAGCTCTTCAATATAGTCACTTGTCTCATATAGCACAAAGAATTGTAGCAAAAGGTGCAAAGGATAAACAATCATCAACTTTTGTGGAGTCTAAGTTGTTGGAGCTAGAGGCAGAATTGGATGGCAATTTACCTAGTCAACAAGAACATGAAGCAATTGGTGATATATATTCAGACGATGATCAAGTGCATGAAAATAATGCAAATTTAGTTTTGCGTGATCCAAAAGTAAAGAAGCGTAAAAGGCACGGCAAAGGCAAGAAGAACAATGATTTAGGATATAAGAAGAAGTTGAAAAAGAGATCTTCATCAGCACAACAGAAACAAGAGGATACTATGGTACCCCCTGAAGAACAATGTGTATCTGCACCAAAGAAAAAGAGCTGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

377

Amino Acids

43.47

Weight (kDa)

8.82

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 185 - 207 8.8e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 1078
AccB1I GGYRCC 1 cut(s) 1078
AclWI GGATC 1 cut(s) 953
AcsI RAATTY 5 cut(s) 32, 262, 687, 715, 943
AcuI CTGAAG 2 cut(s) 723, 1107
AfaI GTAC 3 cut(s) 386, 650, 1080
AflIII ACRYGT 1 cut(s) 598
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 4 cut(s) 56, 743, 844, 1122
AluI AGCT 4 cut(s) 56, 743, 844, 1122
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 2 cut(s) 661, 768
Alw44I GTGCAC 1 cut(s) 594
AlwI GGATC 1 cut(s) 953
ApaLI GTGCAC 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 374, 1122
ApoI RAATTY 5 cut(s) 32, 262, 687, 715, 943
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
Asp700I GAANNNNTTC 2 cut(s) 323, 585
Asp718I GGTACC 1 cut(s) 1078
AspLEI GCGC 1 cut(s) 734
AsuHPI GGTGA 3 cut(s) 380, 525, 911
BaeGI GKGCMC 2 cut(s) 244, 598
BaeI ACNNNNGTAYC 4 cut(s) 1062, 1062, 1095, 1095
BanI GGYRCC 1 cut(s) 1078
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 386, 1109
BccI CCATC 4 cut(s) 20, 649, 657, 854
BceAI ACGGC 1 cut(s) 1003
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 1 cut(s) 1063
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 2 cut(s) 661, 768
BfaI CTAG 3 cut(s) 678, 845, 873
BfuAI ACCTGC 1 cut(s) 263
BfuI GTATCC 1 cut(s) 1063
BglII AGATCT 2 cut(s) 169, 1040
BisI GCNGC 2 cut(s) 375, 1123
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 2 cut(s) 376, 1124
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 1080
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 2 cut(s) 664, 743
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 114, 532
BsaBI GATNNNNATC 1 cut(s) 1045
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bse1I ACTGG 2 cut(s) 209, 396
Bse8I GATNNNNATC 1 cut(s) 1045
BseBI CCWGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 865
BseJI GATNNNNATC 1 cut(s) 1045
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 209, 396
BseSI GKGCMC 2 cut(s) 244, 598
BseXI GCAGC 2 cut(s) 386, 1109
BsgI GTGCAG 3 cut(s) 291, 1089, 1108
BshNI GGYRCC 1 cut(s) 1078
BsiHKAI GWGCWC 1 cut(s) 598
BsmAI GTCTC 2 cut(s) 661, 768
BsmBI CGTCTC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 244, 598
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
Bsp1720I GCTNAGC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 1080
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 953
BspQI GCTCTTC 1 cut(s) 750
BspT107I GGYRCC 1 cut(s) 1078
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 2 cut(s) 209, 396
BssMI GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
Bst2UI CCWGG 1 cut(s) 498
Bst6I CTCTTC 3 cut(s) 141, 411, 750
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 384
BstDEI CTNAG 4 cut(s) 57, 333, 645, 831
BstF5I GGATG 1 cut(s) 865
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 8 cut(s) 12, 86, 172, 190, 727, 922, 961, 1043
BstMAI GTCTC 2 cut(s) 661, 768
BstMBI GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
BstMWI GCNNNNNNNGC 3 cut(s) 740, 794, 982
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 2 cut(s) 98, 602
BstSCI CCNGG 1 cut(s) 496
BstSLI GKGCMC 2 cut(s) 244, 598
BstV1I GCAGC 2 cut(s) 386, 1109
BstX2I RGATCY 2 cut(s) 169, 1040
BstYI RGATCY 2 cut(s) 169, 1040
BsuI GTATCC 1 cut(s) 1063
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 865
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 734
Csp6I GTAC 3 cut(s) 385, 649, 1079
CspCI CAANNNNNGTGG 2 cut(s) 804, 839
CviAII CATG 7 cut(s) 68, 95, 100, 599, 704, 887, 929
CviJI RGCY 8 cut(s) 56, 134, 208, 395, 627, 743, 844, 1122
CviKI_1 RGCY 8 cut(s) 56, 134, 208, 395, 627, 743, 844, 1122
CviQI GTAC 3 cut(s) 385, 649, 1079
DdeI CTNAG 4 cut(s) 57, 333, 645, 831
DpnI GATC 8 cut(s) 11, 85, 171, 189, 726, 921, 960, 1042
DpnII GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
Eam1104I CTCTTC 3 cut(s) 141, 411, 750
EarI CTCTTC 3 cut(s) 141, 411, 750
Eco57I CTGAAG 2 cut(s) 723, 1107
EcoRI GAATTC 1 cut(s) 687
EcoRII CCWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 7 cut(s) 71, 98, 103, 602, 707, 890, 932
FalI AAGNNNNNCTT 6 cut(s) 159, 191, 573, 605, 638, 670
FatI CATG 7 cut(s) 67, 94, 99, 598, 703, 886, 928
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 2 cut(s) 375, 1123
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 2 cut(s) 375, 1123
FspBI CTAG 3 cut(s) 678, 845, 873
GlaI GCGC 1 cut(s) 733
GluI GCNGC 2 cut(s) 375, 1123
HhaI GCGC 1 cut(s) 734
Hin1II CATG 7 cut(s) 71, 98, 103, 602, 707, 890, 932
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HincII GTYRAC 2 cut(s) 633, 878
HindII GTYRAC 2 cut(s) 633, 878
HinfI GANTC 4 cut(s) 155, 476, 586, 827
HphI GGTGA 3 cut(s) 380, 525, 911
Hpy166II GTNNAC 5 cut(s) 92, 387, 596, 633, 878
Hpy188I TCNGA 3 cut(s) 9, 192, 913
Hpy188III TCNNGA 3 cut(s) 81, 413, 704
Hpy8I GTNNAC 5 cut(s) 92, 387, 596, 633, 878
HpyAV CCTTC 3 cut(s) 510, 546, 575
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 7 cut(s) 272, 596, 797, 928, 941, 1106, 1125
HpyF10VI GCNNNNNNNGC 3 cut(s) 740, 794, 982
HpyF3I CTNAG 4 cut(s) 57, 333, 645, 831
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 7 cut(s) 71, 98, 103, 602, 707, 890, 932
HspAI GCGC 1 cut(s) 732
KpnI GGTACC 1 cut(s) 1082
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 1 cut(s) 841
LpnPI CCDG 6 cut(s) 190, 258, 409, 483, 510, 1098
Lsp1109I GCAGC 2 cut(s) 386, 1109
LweI GCATC 2 cut(s) 664, 743
MaeI CTAG 3 cut(s) 678, 845, 873
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 4 cut(s) 40, 105, 523, 755
MalI GATC 8 cut(s) 11, 85, 171, 189, 726, 921, 960, 1042
MboI GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
MboII GAAGA 8 cut(s) 158, 428, 729, 737, 1012, 1035, 1036, 1100
MfeI CAATTG 2 cut(s) 403, 894
MflI RGATCY 2 cut(s) 169, 1040
MhlI GDGCHC 2 cut(s) 244, 598
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 2 cut(s) 143, 819
MnlI CCTC 7 cut(s) 96, 107, 358, 446, 700, 841, 1060
MroXI GAANNNNTTC 2 cut(s) 323, 585
MseI TTAA 4 cut(s) 18, 552, 656, 719
MslI CAYNNNNRTG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 498
MunI CAATTG 2 cut(s) 403, 894
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 740, 794, 982
NdeI CATATG 1 cut(s) 481
NdeII GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
NlaIII CATG 7 cut(s) 71, 98, 103, 602, 707, 890, 932
NlaIV GGNNCC 1 cut(s) 1080
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 4 cut(s) 40, 105, 523, 755
NspI RCATGY 2 cut(s) 98, 602
PagI TCATGA 1 cut(s) 703
PciI ACATGT 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 2 cut(s) 323, 585
PfeI GAWTC 3 cut(s) 155, 476, 586
PkrI GCNGC 2 cut(s) 376, 1124
PleI GAGTC 1 cut(s) 835
PpsI GAGTC 1 cut(s) 835
PscI ACATGT 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 1080
PsuI RGATCY 2 cut(s) 169, 1040
RsaI GTAC 3 cut(s) 386, 650, 1080
RsaNI GTAC 3 cut(s) 385, 649, 1079
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 4 cut(s) 18, 552, 656, 719
SatI GCNGC 2 cut(s) 375, 1123
Sau3AI GATC 8 cut(s) 9, 83, 169, 187, 724, 919, 958, 1040
ScaI AGTACT 1 cut(s) 650
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 2 cut(s) 244, 598
SfaNI GCATC 2 cut(s) 664, 743
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 129, 511
SmoI CTYRAG 2 cut(s) 129, 511
SspMI CTAG 3 cut(s) 678, 845, 873
StyD4I CCNGG 1 cut(s) 496
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 82
TaqII GACCGA 1 cut(s) 246
TatI WGTACW 2 cut(s) 384, 648
TfiI GAWTC 3 cut(s) 155, 476, 586
Tru1I TTAA 4 cut(s) 18, 552, 656, 719
Tru9I TTAA 4 cut(s) 18, 552, 656, 719
TseFI GTSAC 4 cut(s) 40, 105, 523, 755
TseI GCWGC 2 cut(s) 374, 1122
Tsp45I GTSAC 4 cut(s) 40, 105, 523, 755
TspDTI ATGAA 5 cut(s) 237, 680, 903, 945, 1035
TspGWI ACGGA 1 cut(s) 605
VneI GTGCAC 1 cut(s) 594
XapI RAATTY 5 cut(s) 32, 262, 687, 715, 943
XceI RCATGY 2 cut(s) 98, 602
XmnI GAANNNNTTC 2 cut(s) 323, 585
XspI CTAG 3 cut(s) 678, 845, 873
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.