Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

12602069 .. 12603575

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAAAATAAAGACGATGAATGTTGTTATCAGCATTGTAGTAACATTGAGAATGAGCAAAGAGGATGTGAAGATGATGCGATTGGTGGTAAGACTAATGAGGAACCTAAATATGACACTCAAGAGGCCAATAACAATACTAAAAAGCCCAATGATGACGAACACGTGGATTCTGGTTTAGAAGGTTTATGTAACTTGGATGGTAAGAAGCAAGCAGGAGGTTTCAAATCCCTCTTCTTCCGGAAGAAGAAATCCACTCCCTCTAGCTCCGGCGCCGCTCAGCCGACGGTGATGTGGTCATCGTCGTTCAACAAGCAAGCGCAGATAGCCGAGCTGGAGCAGGTCTTCAAGAAATTCGACTTTAACGGCAACGACAAGATCTCGTCGTCGGAGCTCGAAGCGATCATGTACACCCTGGGCCACCCGGCGATGGAGGACGAGCTCCGGTCCATGATCCTCGAGGTCGACGCTGACAGCAACGGCTTCATCGACTTCAAGGAGTTCGTGGAGCTCAACACCAACTGGATCGACTCCGTCGAGGCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

183

Amino Acids

20.41

Weight (kDa)

4.56

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	111 - 171	4e-11	EF-hand domain pair
EF-hand_1	PF00036	147 - 171	9.4e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	2 cut(s)	448, 533
AcsI	RAATTY	1 cut(s)	353
AcvI	CACGTG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	226, 310, 349, 496
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	5 cut(s)	267, 334, 394, 442, 511
AluI	AGCT	5 cut(s)	267, 334, 394, 442, 511
Alw21I	GWGCWC	3 cut(s)	396, 444, 513
AlwI	GGATC	2 cut(s)	448, 533
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	2 cut(s)	126, 418
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	275, 322
AspS9I	GGNCC	2 cut(s)	418, 447
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	3 cut(s)	396, 444, 513
BbrPI	CACGTG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	3 cut(s)	396, 444, 513
BccI	CCATC	2 cut(s)	194, 424
BceAI	ACGGC	2 cut(s)	382, 496
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	331
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	1 cut(s)	276
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	416, 425
Bme18I	GGWCC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	418, 447
BmiI	GGNNCC	2 cut(s)	105, 274
BmrFI	CCNGG	2 cut(s)	416, 425
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	425
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	414, 415
BsaWI	WCCGGW	2 cut(s)	240, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	414, 415
BseGI	GGATG	2 cut(s)	71, 205
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	128, 420
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	3 cut(s)	396, 444, 513
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	241, 270, 425, 445
BslI	CCNNNNNNNGG	1 cut(s)	430
BsnI	GGCC	2 cut(s)	128, 420
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	396, 444, 513
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	4 cut(s)	378, 402, 453, 525
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	128, 420
BspCNI	CTCAG	1 cut(s)	292
BspEI	TCCGGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	105, 274
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	448, 533
BspT107I	GGYRCC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	414, 415
BssMI	GATC	4 cut(s)	378, 402, 453, 525
BssNI	GRCGYC	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	213, 318
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	71, 205
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	275, 322
BstKTI	GATC	4 cut(s)	381, 405, 456, 528
BstMBI	GATC	4 cut(s)	378, 402, 453, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	414, 423
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	128, 420
BtgZI	GCGATG	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	71, 205
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	213, 318
CfoI	GCGC	2 cut(s)	275, 322
Cfr13I	GGNCC	2 cut(s)	418, 447
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	406, 451
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	279
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	4 cut(s)	380, 404, 455, 527
DpnII	GATC	4 cut(s)	378, 402, 453, 525
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	3 cut(s)	394, 442, 511
Eco24I	GRGCYC	3 cut(s)	396, 444, 513
Eco47I	GGWCC	1 cut(s)	447
Eco53kI	GAGCTC	3 cut(s)	394, 442, 511
Eco72I	CACGTG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	3 cut(s)	394, 442, 511
EcoRII	CCWGG	1 cut(s)	414
EcoT38I	GRGCYC	3 cut(s)	396, 444, 513
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
FaeI	CATG	2 cut(s)	409, 454
FaiI	YATR	4 cut(s)	114, 190, 407, 452
FatI	CATG	2 cut(s)	405, 450
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	78, 212
FriOI	GRGCYC	3 cut(s)	396, 444, 513
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	2 cut(s)	274, 321
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	128, 420
HapII	CCGG	4 cut(s)	241, 270, 425, 445
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	2 cut(s)	275, 322
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	409, 454
Hin6I	GCGC	2 cut(s)	273, 320
HinP1I	GCGC	2 cut(s)	273, 320
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	170, 530
HpaII	CCGG	4 cut(s)	241, 270, 425, 445
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	411, 466
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	122, 241, 349
Hpy8I	GTNNAC	2 cut(s)	411, 466
Hpy99I	CGWCG	6 cut(s)	289, 307, 388, 391, 470, 539
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	409, 454
HspAI	GCGC	2 cut(s)	273, 320
KasI	GGCGCC	1 cut(s)	272
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	378, 402, 453, 525
LmnI	GCTCC	5 cut(s)	272, 337, 391, 447, 508
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	41, 191
MalI	GATC	4 cut(s)	380, 404, 455, 527
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	4 cut(s)	378, 402, 453, 525
MboII	GAAGA	6 cut(s)	83, 226, 229, 256, 259, 337
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	3 cut(s)	396, 444, 513
MluCI	AATT	1 cut(s)	353
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	369
MroI	TCCGGA	1 cut(s)	240
MseI	TTAA	1 cut(s)	363
MspI	CCGG	4 cut(s)	241, 270, 425, 445
MspR9I	CCNGG	2 cut(s)	416, 425
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	326
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	4 cut(s)	378, 402, 453, 525
NlaIII	CATG	2 cut(s)	409, 454
NlaIV	GGNNCC	2 cut(s)	105, 274
NmeAIII	GCCGAG	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	458
PasI	CCCWGGG	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	2 cut(s)	486, 534
PfeI	GAWTC	1 cut(s)	170
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	524
PluTI	GGCGCC	1 cut(s)	276
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	166
Psp124BI	GAGCTC	3 cut(s)	396, 444, 513
Psp6I	CCWGG	1 cut(s)	414
PspCI	CACGTG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	105, 274
PspPI	GGNCC	2 cut(s)	418, 447
PspXI	VCTCGAGB	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SacI	GAGCTC	3 cut(s)	396, 444, 513
SalI	GTCGAC	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	4 cut(s)	378, 402, 453, 525
Sau96I	GGNCC	2 cut(s)	418, 447
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	416, 425
SduI	GDGCHC	3 cut(s)	396, 444, 513
SfaNI	GCATC	1 cut(s)	67
SfoI	GGCGCC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	120, 458
SmoI	CTYRAG	2 cut(s)	120, 458
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	1 cut(s)	276
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	3 cut(s)	396, 444, 513
StyD4I	CCNGG	2 cut(s)	414, 423
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	7 cut(s)	357, 396, 459, 465, 489, 528, 537
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TspDTI	ATGAA	3 cut(s)	17, 33, 475
TspGWI	ACGGA	1 cut(s)	523
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.