Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Forward (+)

20820218 .. 20822950

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29941.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTACGACAGAGTGCATATTGGTACCAAATCCAAGGAAATTGAAGACGATGAATTTTATTCTCTTGGAGAAACGAATGAAGAGCTGGAATATGATAGTCCAAAGGTTAATGATGATACTCAAGATCCCAATGATAATGAACACTTGGATCCCAATGATAATGAACACTTCGATCTTAATGTTGGTGAGAAGGAAGTAGAAAGTGGGAATATCCCAGTTCTTGAGAGTGTTGAAGAGTTTGAATCAAGTTGGAAAGATCTACTTGATTATTATGATTTGATAGAAAATGACTGGCTAAAAGACTTGTATGAATTGCGTGAGAAGTGGGCACAAATCTATGGTCGATCAAATTTTTGTGCAGGTATGACAACAACACAAAGAAGTGAAAGCATAAACAAGACTTTGAAAAAGTTCTTTTCTAAGAACCTTATTCTGTGTGAATGGGTCGTACACTATGAGCGTGTTTTAGTTGATCGAAGAGAGAAGGAGAGGCTTGCAGAACTTGCAACTACACAAAGAAAGCGAAGACTTTTGTCCAATTGGAAGGTGGAGGGTGAAGCAGCAAGAATCATATGTGGTTCAAAGACCAGGAAATCCAAACTTGAGAAGCTCTTCAATATAGCACAAGGAATTGTAGAAAAAGGTGCAAAGGATAAACAATCATCAACTTTGGTAGAGTCTAAGTTGTTGGAGCTAGAGGCAGAATTGGATGGCAATTTACCCAGTCAACAAGAACATGAAGCAATTGGTGATATATATTCAGACGATGATCAAGTGCATGAAAATAATGCAAATTTAGTTTTGCGTGATCCAAAAGTAAAGAAGCGTAAAAGGCACGATAAAGGCAAGAAGAACAATGATTTGGGATATAAGAAGAAGTTGAAAAAGAGATCTTCATCAGCACAACAGGAACAAGAGGATGCTCCGGTTCCCCTTATCAATGATTTGAGATCTAAGAAAATGCCAAAAAGAAGATCTACATCAATATGGCAGGAACAAGAGGATACTATGGTACCCCCTGAAGAACAATGTGTATCTGCGCCAAAGAAAAAGAGAGCTGCACCTAAAAAAAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

360

Amino Acids

41.71

Weight (kDa)

5.74

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
Acc65I	GGTACC	2 cut(s)	23, 1012
AccB1I	GGYRCC	2 cut(s)	23, 1012
AclWI	GGATC	4 cut(s)	119, 143, 156, 803
AcsI	RAATTY	3 cut(s)	53, 349, 793
AcuI	CTGAAG	1 cut(s)	1041
AfaI	GTAC	4 cut(s)	5, 25, 450, 1014
AgsI	TTSAA	7 cut(s)	44, 233, 242, 406, 582, 616, 883
AjnI	CCWGG	1 cut(s)	587
AjuI	GAANNNNNNNTTGG	2 cut(s)	845, 877
AluBI	AGCT	4 cut(s)	85, 610, 694, 1058
AluI	AGCT	4 cut(s)	85, 610, 694, 1058
AlwI	GGATC	4 cut(s)	119, 143, 156, 803
ApeKI	GCWGC	2 cut(s)	560, 1058
ApoI	RAATTY	3 cut(s)	53, 349, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
Asp700I	GAANNNNTTC	2 cut(s)	410, 611
Asp718I	GGTACC	2 cut(s)	23, 1012
AspLEI	GCGC	1 cut(s)	1042
AsuHPI	GGTGA	3 cut(s)	197, 566, 761
BaeGI	GKGCMC	1 cut(s)	331
BaeI	ACNNNNGTAYC	4 cut(s)	996, 996, 1029, 1029
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	2 cut(s)	23, 1012
BbsI	GAAGAC	2 cut(s)	51, 532
BbvI	GCAGC	2 cut(s)	572, 1045
BccI	CCATC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	589
BciVI	GTATCC	1 cut(s)	997
BclI	TGATCA	1 cut(s)	769
BfaI	CTAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	997
BglII	AGATCT	4 cut(s)	256, 890, 950, 974
BisI	GCNGC	2 cut(s)	561, 1059
BlsI	GCNGC	2 cut(s)	562, 1060
Bme1390I	CCNGG	1 cut(s)	589
BmiI	GGNNCC	4 cut(s)	25, 150, 930, 1014
BmrFI	CCNGG	1 cut(s)	589
BmrI	ACTGGG	2 cut(s)	209, 717
BmsI	GCATC	1 cut(s)	910
BmuI	ACTGGG	2 cut(s)	209, 717
BoxI	GACNNNNGTC	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	51, 532
BpuEI	CTTGAG	3 cut(s)	105, 242, 623
BsaBI	GATNNNNATC	2 cut(s)	895, 979
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	925
Bse1I	ACTGG	3 cut(s)	215, 296, 723
Bse8I	GATNNNNATC	2 cut(s)	895, 979
BseBI	CCWGG	1 cut(s)	589
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	715, 925
BseJI	GATNNNNATC	2 cut(s)	895, 979
BseNI	ACTGG	3 cut(s)	215, 296, 723
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	572, 1045
BsgI	GTGCAG	2 cut(s)	378, 1044
BshNI	GGYRCC	2 cut(s)	23, 1012
BsiSI	CCGG	1 cut(s)	926
Bsp1286I	GDGCHC	1 cut(s)	331
BspLI	GGNNCC	4 cut(s)	25, 150, 930, 1014
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	4 cut(s)	119, 143, 156, 803
BspQI	GCTCTTC	2 cut(s)	75, 617
BspT107I	GGYRCC	2 cut(s)	23, 1012
BsrI	ACTGG	3 cut(s)	215, 296, 723
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	589
Bst6I	CTCTTC	4 cut(s)	75, 228, 472, 617
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	3 cut(s)	420, 681, 954
BstF5I	GGATG	2 cut(s)	715, 925
BstHHI	GCGC	1 cut(s)	1042
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 832
BstNI	CCWGG	1 cut(s)	589
BstPAI	GACNNNNGTC	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	587
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	572, 1045
BstV2I	GAAGAC	2 cut(s)	51, 532
BstX2I	RGATCY	6 cut(s)	124, 148, 256, 890, 950, 974
BstYI	RGATCY	6 cut(s)	124, 148, 256, 890, 950, 974
BsuI	GTATCC	1 cut(s)	997
BtsCI	GGATG	2 cut(s)	715, 925
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	495
CfoI	GCGC	1 cut(s)	1042
Csp6I	GTAC	4 cut(s)	4, 24, 449, 1013
CviAII	CATG	2 cut(s)	737, 779
CviJI	RGCY	6 cut(s)	85, 295, 493, 610, 694, 1058
CviKI_1	RGCY	6 cut(s)	85, 295, 493, 610, 694, 1058
CviQI	GTAC	4 cut(s)	4, 24, 449, 1013
DdeI	CTNAG	3 cut(s)	420, 681, 954
Eam1104I	CTCTTC	4 cut(s)	75, 228, 472, 617
EarI	CTCTTC	4 cut(s)	75, 228, 472, 617
Eco130I	CCWWGG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	1041
EcoRII	CCWGG	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	740, 782
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	2 cut(s)	736, 778
FauNDI	CATATG	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	2 cut(s)	561, 1059
FokI	GGATG	2 cut(s)	722, 932
Fsp4HI	GCNGC	2 cut(s)	561, 1059
FspBI	CTAG	1 cut(s)	695
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	2 cut(s)	561, 1059
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	2 cut(s)	740, 782
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	1 cut(s)	728
HindII	GTYRAC	1 cut(s)	728
HinfI	GANTC	3 cut(s)	242, 567, 677
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	3 cut(s)	197, 566, 761
Hpy166II	GTNNAC	2 cut(s)	451, 728
Hpy188I	TCNGA	1 cut(s)	763
Hpy188III	TCNNGA	2 cut(s)	122, 221
Hpy8I	GTNNAC	2 cut(s)	451, 728
HpyAV	CCTTC	3 cut(s)	184, 478, 538
HpyCH4V	TGCA	8 cut(s)	16, 359, 497, 506, 647, 778, 791, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 832
HpyF3I	CTNAG	3 cut(s)	420, 681, 954
Hsp92II	CATG	2 cut(s)	740, 782
HspAI	GCGC	1 cut(s)	1040
KpnI	GGTACC	2 cut(s)	27, 1016
Ksp22I	TGATCA	1 cut(s)	769
LguI	GCTCTTC	2 cut(s)	75, 617
LmnI	GCTCC	2 cut(s)	691, 928
Lsp1109I	GCAGC	2 cut(s)	572, 1045
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	1 cut(s)	695
MfeI	CAATTG	2 cut(s)	538, 744
MflI	RGATCY	6 cut(s)	124, 148, 256, 890, 950, 974
MhlI	GDGCHC	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	2 cut(s)	230, 669
MnlI	CCTC	5 cut(s)	483, 544, 691, 910, 994
MroXI	GAANNNNTTC	2 cut(s)	410, 611
MseI	TTAA	2 cut(s)	108, 177
MslI	CAYNNNNRTG	1 cut(s)	985
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	589
MunI	CAATTG	2 cut(s)	538, 744
MvaI	CCWGG	1 cut(s)	589
MwoI	GCNNNNNNNGC	2 cut(s)	503, 832
NdeI	CATATG	1 cut(s)	572
NlaIII	CATG	2 cut(s)	740, 782
NlaIV	GGNNCC	4 cut(s)	25, 150, 930, 1014
PciSI	GCTCTTC	2 cut(s)	75, 617
PdmI	GAANNNNTTC	2 cut(s)	410, 611
PfeI	GAWTC	2 cut(s)	242, 567
PkrI	GCNGC	2 cut(s)	562, 1060
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
PshAI	GACNNNNGTC	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	587
PspN4I	GGNNCC	4 cut(s)	25, 150, 930, 1014
PsuI	RGATCY	6 cut(s)	124, 148, 256, 890, 950, 974
RsaI	GTAC	4 cut(s)	5, 25, 450, 1014
RsaNI	GTAC	4 cut(s)	4, 24, 449, 1013
RseI	CAYNNNNRTG	1 cut(s)	985
SapI	GCTCTTC	2 cut(s)	75, 617
SaqAI	TTAA	2 cut(s)	108, 177
SatI	GCNGC	2 cut(s)	561, 1059
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	910
SmiMI	CAYNNNNRTG	1 cut(s)	985
SmlI	CTYRAG	3 cut(s)	120, 221, 602
SmoI	CTYRAG	3 cut(s)	120, 221, 602
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	1 cut(s)	587
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	3 cut(s)	171, 343, 475
TfiI	GAWTC	2 cut(s)	242, 567
Tru1I	TTAA	2 cut(s)	108, 177
Tru9I	TTAA	2 cut(s)	108, 177
TseI	GCWGC	2 cut(s)	560, 1058
TspDTI	ATGAA	8 cut(s)	66, 93, 153, 177, 324, 753, 795, 885
XapI	RAATTY	3 cut(s)	53, 349, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	410, 611
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.