Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

41037849 .. 41077050

Gene Structure 39202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG295300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCCTTCATAAATCCTGGATTTCCAACAACTTTTGGTGCTCAAGGCATTCCCTCGCATTATCCTTATGGATTTCCACCAACAACTTCTAGTGTACAAGCAATGCCTAATCAATCACATGACATTCCCTCGTATTATCCTTATGGATTTCCACCAACAGCTTCTATTGTTCATGCAATTCCAAGTCAATCACTTGGTTACCAACCTATTCATCCAATGTTTGATTATTCGCTTATGTATTCACAGACTTCTGAGAGCTCAGAATTTGCCAGGAACACTTCCGTCAGAGTTGGCAAGGCTTCCCTATCTCCAACAAATGACCATGGATTTCAATTATTTCTCTGGAGGTCTTCTTTGGGAACTTGGATATTTGCCGAGCATAGAAACACTGTAAGATACTTTGAACCCCCGGCAGAAACCCCTTCAGGACCCATATCAATGAGGTTATCTATAGGTGCAGTGGTTGGAAGTATGGCTGCAGGGGGAGTATTCCTTGTATTGCTGATTTTGGGTTATCTTTGGTGGAGAGGCTATCTAAGACGAGAAAGGACTTTGGAGCAAGGTGACTTACAAGCTCAAAGCTGGCGGTGTCGATCACCGGCGTTTGATCGAAGCCAAGTTGGAGAAGCTCCCCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

213

Amino Acids

23.67

Weight (kDa)

7.92

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	332, 404
AjnI	CCWGG	2 cut(s)	16, 269
AluBI	AGCT	5 cut(s)	161, 258, 575, 582, 629
AluI	AGCT	5 cut(s)	161, 258, 575, 582, 629
Alw21I	GWGCWC	2 cut(s)	43, 260
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	575, 588
AvaII	GGWCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	43, 260
BbvI	GCAGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	18, 271
BcnI	CCSGG	1 cut(s)	410
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	450, 477
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	18, 271, 410
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	3 cut(s)	18, 271, 410
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	322, 408, 634
Bse118I	RCCGGY	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	18, 271
BseDI	CCNNGG	3 cut(s)	322, 408, 634
BseGI	GGATG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	243, 273
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	43, 260
BsiSI	CCGG	2 cut(s)	410, 599
BsmI	GAATGC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	43, 260
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	593, 607
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	1 cut(s)	586
BspCNI	CTCAG	2 cut(s)	244, 272
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	598
BsrGI	TGTACA	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	3 cut(s)	322, 408, 634
BssMI	GATC	2 cut(s)	593, 607
BssT1I	CCWWGG	2 cut(s)	322, 634
Bst2UI	CCWGG	2 cut(s)	18, 271
Bst4CI	ACNGT	1 cut(s)	391
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	3 cut(s)	252, 259, 536
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	596, 610
BstMBI	GATC	2 cut(s)	593, 607
BstNI	CCWGG	2 cut(s)	18, 271
BstPI	GGTNACC	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	16, 269, 408
BstSFI	CTRYAG	2 cut(s)	450, 477
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	387, 465
Cac8I	GCNNGC	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	3 cut(s)	119, 173, 323
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	3 cut(s)	252, 259, 536
DpnI	GATC	2 cut(s)	595, 609
DpnII	GATC	2 cut(s)	593, 607
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	322, 634
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	16, 269
EcoT14I	CCWWGG	2 cut(s)	322, 634
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	322, 634
FaeI	CATG	3 cut(s)	122, 176, 326
FatI	CATG	3 cut(s)	118, 172, 322
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	364
HapII	CCGG	2 cut(s)	410, 599
Hin1II	CATG	3 cut(s)	122, 176, 326
HpaII	CCGG	2 cut(s)	410, 599
HphI	GGTGA	2 cut(s)	575, 588
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	3 cut(s)	253, 262, 287
Hpy188III	TCNNGA	2 cut(s)	343, 426
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	16, 432
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	176, 458, 479
HpyF3I	CTNAG	3 cut(s)	252, 259, 536
Hsp92II	CATG	3 cut(s)	122, 176, 326
Kzo9I	GATC	2 cut(s)	593, 607
LmnI	GCTCC	2 cut(s)	556, 634
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	197, 563
MalI	GATC	2 cut(s)	595, 609
MboI	GATC	2 cut(s)	593, 607
MboII	GAAGA	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	43, 260
MluCI	AATT	3 cut(s)	177, 263, 332
MmeI	TCCRAC	4 cut(s)	50, 335, 445, 601
MnlI	CCTC	5 cut(s)	64, 139, 339, 435, 521
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	2 cut(s)	410, 599
MspR9I	CCNGG	3 cut(s)	18, 271, 410
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	2 cut(s)	18, 271
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	593, 607
NlaIII	CATG	3 cut(s)	122, 176, 326
NlaIV	GGNNCC	1 cut(s)	430
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	563
PctI	GAATGC	1 cut(s)	48
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	478
PpuMI	RGGWCCY	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	16, 269
PspEI	GGTNACC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	16, 269
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	428
PspPPI	RGGWCCY	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	593, 607
Sau96I	GGNCC	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	18, 271, 410
SduI	GDGCHC	2 cut(s)	43, 260
SfcI	CTRYAG	2 cut(s)	450, 477
SgrAI	CRCCGGYG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	3 cut(s)	177, 263, 332
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	16, 269, 408
StyI	CCWWGG	2 cut(s)	322, 634
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	592, 610
TasI	AATT	3 cut(s)	177, 263, 332
TatI	WGTACW	1 cut(s)	94
TscAI	CASTG	2 cut(s)	394, 465
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	161, 200
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	394, 465
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	263
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.