RchiOBHm_Chr1g0369391

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002145
Physical Location & Seq
Reverse (-)
59209940 .. 59215539
5600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59363

Sequence Viewer

Length: 3291 bp
ATGGAAGATCGAAACGTGAGAATGAATACTGGAATGTCCCATGTGATGCCGTACATCAAAGACTCGAAGGACCGGGACACCGTGTCGTTGGTGTGCCGACGGTGGTACGAGCTGGACGCGCTCACGCGCGAGCACGTGACCATCGCGCTCTGCTACACGACGACTCCCGAGAGGCTCAGGAGGCGGTTCCGGCAGCTCAAGTCGCTGAAGCTCAAGGGAAAGCCGAGGGCGGCGATGTTTAATCGGATACCGGAGGATTGGGGAGGCTATGTGACGCCGTGGGTGGAGGAGATTGCCGAGTCGTTTAAGAGCTTGAAGGCCTTGCATTTCCGGAGAATGATTGTGAGTGATTCCGACCTGGAGCTATTGGCGCGGTCACGCGGCCGTGAGCTCCAATCGCTTAAGCTCGACAAGTGCTCCGGGTTTTCGACTGACGGCCTTGTCCACATCGCCCGCTTCTGCAGATTGACAGAGTGCATAGTAATTGGGACACAAGCCTACACCACCAAATTCATGGAAAATAAAGACGATGAATCTTGTTATCAACATTGTAGTAACACTGAGAATGAGCAAAGAGGATGTGAAGATGATGCAATTGATGGTGAGACTAATGAGGAACCTGAATATGATACTCAAGAGGCCAGTAGCGATACTCAAGTGCCCAGTGATGATGAACACGGGGATTCTAGTTTAGAAGGTTTATGTATCTTGGATGGTAAGAAGCAAGCAGGAGGTGAGAATATCCCAGTTCTTGGTATGAGTTTTGAAAGTGATCAAGATGCATATGACTATTATAATTCATATGCTAGAGTTGTTGGGTTTAGTGTGCGAAGGTTGAGAAGCAACAAATATAAGCATACTAATGTGACATGGAAAAGAGAATTTTGTTGCTCTTGTGAAGGATTCTATACAAAAAAGAACACTCCAGAGAAGAAAAGAGAAGAAAGAAGATTTGGATGTAAGGCAATGCTTCAGATCAAACTAAATGAAGATGGGAAATTTGTTGTCACAAAGTTTGAAGCTGAGCATACCCATGATCTTGTTCCTGAATCAAGTTCACATGTCTTAAGGTCACAAAGAACCATAGAACCTTCTCAAGGTGGTTTGATGAATCAAATGCACTTTGCAGGGTTCAAACCATCACAGATCTTTTCATACCTGACCGTCGAAGCAGGAGGACCGGAAAATCTAAATTTCCTTCAGACCGATTGCAATAACTTCATTCAAAGAAGGCGGGCAAAGTTTTTGAAAAAAGGTGATGCTCAATGTTTGCTTGATTACTTTAAGAAGAAGCAAATGGAGGATAAGTCATTTTTTTATGCAATTCGAACAAACATCGACAATGAAATATGTGGTTGTTTTTTTTGTGATGGAAAATCAAGGAGTGATTATACTATATTTGGTGATGTGGTTGTCTTTGATACAACCTTCAAAACCAACAAGTATGACATGGTTTGTGCTCCAATTGTTGGAGTTAATCATCATGGTCAAACAATTCTATTTGGCTGTGGATTATTAGATGGGGAGACCACAGAGGCATGCAAATGGTTCTTTGATGTTTTCCTACAAGCTATGGGAGGAAAAAAACCAAAGACAATATTTACAGATCAAGCTGCATCGATTGCTAGTGCAATTAGGGAAGTACTACCTAATTCTCACCATCGTCTTTGTTTGTGGCACATATATCAAAATGCTGCAAAACACTTGAGTCAAGTCTTTACGAAGTTCTCCACATTTTCACAAGCTTTCAAAAGTTGCATATATGATCCAGAGAGTGTTGAAGAGTTTGAATCGAGTTGGAAAGATCTACTTGATTATTATGATTTGAAAGAAAATGAGTGGCTAAAAGACTTGTATAACTTGCGTGAGAAGTGGGCACAAATTTATGGCCGATGCAACTTTTGTGCAGGTATGACAACAACTCAGAGAAGTGAAAGTATAAACAAGACTTTGAAAAAGTTCTTTTATAAGAACCTTATTCTTTGTGAGTGGGTGGTACACTATGAGCGTGCTTTAGTTGATCGAAGAGAAAAGGAGAGGCTAGCAGAAGTTGCAACTACGCAAAGAAAGCGAAAACTTCTGTCTAATTGGAAAGTGGAGGTTGAAGCAGCAAAGATGTACACAAAAGCAAGTTTCAATTGTTTTCAAGAAGAGTTTCGAAAATGTTTGGACTTGATACTGGAATTAGAGAGTGATGATGGGAGAATAGAAACATATGTGGTTCAAAGACCAGGGAATCCAAACTTGAGAAGGTCAGTCATCTATTCCCCCTCAAATCAGTCAGTTAATTGTAGTTGTAAGAGATTTCAGTTTGAAGGGATTCTTTGTGCACATGCATTAAAATTATTCCGTGAGTTAGGCTTGTCAACATTACCATCCAAGTACTACTTAAAAAGATGGAGACGAGATGCTAGACAAGGAGTTGATCTTGAATGTTATGGGGAAGCAAATTTTAGTGATCGGAGCGCATCTTCTGCACTCCAATATAGTCACTTGTCTCATATAGCACAAAGAATTGTAGCGAAAGGTGCAAAGGATAAACAATCGTCCACCTTGGTGGAGTCTAAATTGTTGGAGTTGGAGGCAGAATTGGATGGCAATTTATCCATTGGACAAGAACATGAAACAAATGGTGATATAGATTCAAACGATCAAGTGAATGAAAATAATGCAAATCTGGTTTTGCGTGATCCAAAAGTTAAGAGGGGTAGAAGGCGTGGCAAAGGTAAGAGAAATAATGATTTGGGATCTAAGAAGCAATCAAAACTGAGATCTTCATCAGTGCGGCGAGAACAAGAGGATGGTCCAGTACCCCTTAAAGAACAAAATGTCTCTGTATCAAGGAAAAGGAAAACTCCATCTAAAAGAAAAGATTCTCAGGAACCCAACTCATATGAACATGAGAAGACTGGCCCTTCAAATTCATATGAACATGTTCAGGGATCAATTGGATTGGTTAATCAAAATCAATCAAATATGCCCTTCATAAATCCTGGATTTCCAACAACTTTTGGTCCTCAAGGCATTCCCTCGCATTATCCTTATGGATTTCCACCAACAACTTCCAGTGTACAAGCAATGCCTAATCAATCACATGACATTCCCTCGCATTATCCTTATGGATTTCCACCAACAGCTTCTATTGTTCATGCAATTCCAAGTCAATCACTTGGTTACCAACCTATTCGTCCAATGTTTGATTATTCACTTATGTATTCACAGGCTATCATCCAACCAAGACCTCAAGGACCAGCTCACCAACTGAATTTTCCAGATCCATCGACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1096

Amino Acids

125.71

Weight (kDa)

8.39

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 13 - 45 1.3e-17 F-box
Transp_inhibit PF18791 65 - 110 8e-21 Transport inhibitor response 1 protein domain
FAR1 PF03101 263 - 349 7.2e-23 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 439 - 552 1.9e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 470 - 564 3.3e-30 MULE transposase domain
Transposase_mut PF00872 484 - 653 1.5e-08 Transposase, Mutator family
SWIM PF04434 763 - 785 2.7e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 795, 1968
AasI GACNNNNNNGTC 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 1898
AccB7I CCANNNNNTGG 2 cut(s) 752, 1469
AccII CGCG 6 cut(s) 119, 127, 129, 146, 373, 381
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 7 cut(s) 184, 230, 373, 381, 454, 1234, 2785
AclWI GGATC 5 cut(s) 1760, 2684, 2755, 2950, 3269
AcoI YGGCCR 2 cut(s) 382, 1888
AcsI RAATTY 8 cut(s) 509, 881, 998, 1192, 1881, 2449, 2920, 3265
AcuI CTGAAG 3 cut(s) 227, 956, 1184
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 8 cut(s) 53, 107, 1644, 1998, 2120, 2384, 2811, 3072
AfiI CCNNNNNNNGG 3 cut(s) 752, 1097, 1469
AflII CTTAAG 2 cut(s) 401, 1066
AflIII ACRYGT 2 cut(s) 1060, 2932
AhdI GACNNNNNGTC 1 cut(s) 82
AjnI CCWGG 3 cut(s) 357, 2230, 2992
AjuI GAANNNNNNNTTGG 4 cut(s) 936, 968, 3252, 3284
AleI CACNNNNGTG 1 cut(s) 2555
Alw21I GWGCWC 5 cut(s) 135, 393, 419, 1462, 2332
Alw26I GTCTC 5 cut(s) 599, 1520, 2395, 2502, 2836
Alw44I GTGCAC 1 cut(s) 2328
AlwI GGATC 5 cut(s) 1760, 2684, 2755, 2950, 3269
Ama87I CYCGRG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 6 cut(s) 318, 382, 436, 639, 1888, 2911
ApaLI GTGCAC 1 cut(s) 2328
ApeKI GCWGC 4 cut(s) 193, 1613, 1694, 2108
ApoI RAATTY 8 cut(s) 509, 881, 998, 1192, 1881, 2449, 2920, 3265
Asp700I GAANNNNTTC 5 cut(s) 1958, 2154, 2319, 2872, 2934
AspLEI GCGC 5 cut(s) 121, 129, 148, 373, 2468
AspS9I GGNCC 6 cut(s) 70, 1178, 2804, 2912, 3014, 3248
AsuC2I CCSGG 2 cut(s) 74, 421
AsuHPI GGTGA 7 cut(s) 614, 746, 1268, 1415, 1649, 2645, 3248
AsuII TTCGAA 2 cut(s) 1327, 2158
AsuNHI GCTAGC 1 cut(s) 2041
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 5 cut(s) 70, 1178, 2804, 3014, 3248
BaeGI GKGCMC 3 cut(s) 663, 1879, 2332
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BanII GRGCYC 1 cut(s) 393
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 2912
Bbv12I GWGCWC 5 cut(s) 135, 393, 419, 1462, 2332
BbvI GCAGC 4 cut(s) 205, 1600, 1681, 2120
BceAI ACGGC 4 cut(s) 34, 262, 369, 451
BciT130I CCWGG 3 cut(s) 359, 2232, 2994
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 74, 421
BcoDI GTCTC 5 cut(s) 599, 1520, 2395, 2502, 2836
BfaI CTAG 5 cut(s) 687, 807, 1626, 2042, 2412
BfmI CTRYAG 1 cut(s) 460
BfrI CTTAAG 2 cut(s) 401, 1066
BfuAI ACCTGC 1 cut(s) 1898
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 3 cut(s) 1146, 1804, 2771
BisI GCNGC 7 cut(s) 194, 231, 382, 1614, 1695, 2109, 2786
BlpI GCTNAGC 1 cut(s) 1023
BlsI GCNGC 7 cut(s) 195, 232, 383, 1615, 1696, 2110, 2787
BmcAI AGTACT 2 cut(s) 1644, 2384
Bme1390I CCNGG 5 cut(s) 74, 359, 421, 2232, 2994
Bme18I GGWCC 5 cut(s) 70, 1178, 2804, 3014, 3248
BmeRI GACNNNNNGTC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 6 cut(s) 70, 1178, 2804, 2912, 3014, 3248
BmiI GGNNCC 3 cut(s) 188, 618, 2883
BmrFI CCNGG 5 cut(s) 74, 359, 421, 2232, 2994
BmrI ACTGGG 2 cut(s) 657, 740
BmsI GCATC 8 cut(s) 36, 580, 769, 1249, 1625, 1883, 2398, 2477
BmtI GCTAGC 1 cut(s) 2045
BmuI ACTGGG 2 cut(s) 657, 740
BpiI GAAGAC 1 cut(s) 2912
BpmI CTGGAG 2 cut(s) 380, 909
Bpu10I CCTNAGC 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 1023
Bpu14I TTCGAA 2 cut(s) 1327, 2158
BpuEI CTTGAG 9 cut(s) 182, 197, 618, 639, 1080, 1726, 2266, 3003, 3228
BpuMI CCSGG 2 cut(s) 74, 421
Bsa29I ATCGAT 1 cut(s) 1619
BsaAI YACGTR 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 2776
BsaHI GRCGYC 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 1520
BsaJI CCNNGG 4 cut(s) 224, 278, 2231, 2553
BsaWI WCCGGW 3 cut(s) 250, 330, 1180
BsaXI ACNNNNNCTCC 8 cut(s) 148, 178, 255, 285, 401, 431, 1292, 1322
Bsc4I CCNNNNNNNGG 3 cut(s) 752, 1097, 1469
Bse1I ACTGG 8 cut(s) 34, 642, 663, 746, 2184, 2807, 2914, 3066
Bse3DI GCAATG 2 cut(s) 972, 3084
Bse8I GATNNNNATC 1 cut(s) 2776
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 3 cut(s) 359, 2232, 2994
BseCI ATCGAT 1 cut(s) 1619
BseDI CCNNGG 4 cut(s) 224, 278, 2231, 2553
BseGI GGATG 7 cut(s) 584, 718, 962, 2375, 2599, 2806, 3228
BseJI GATNNNNATC 1 cut(s) 2776
BseLI CCNNNNNNNGG 3 cut(s) 752, 1097, 1469
BseMI GCAATG 2 cut(s) 972, 3084
BseMII CTCAG 6 cut(s) 190, 552, 1014, 1937, 2759, 2891
BseNI ACTGG 8 cut(s) 34, 642, 663, 746, 2184, 2807, 2914, 3066
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 3 cut(s) 663, 1879, 2332
BseX3I CGGCCG 1 cut(s) 382
BseXI GCAGC 4 cut(s) 205, 1600, 1681, 2120
BsgI GTGCAG 2 cut(s) 1926, 2460
Bsh1236I CGCG 6 cut(s) 119, 127, 129, 146, 373, 381
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 6 cut(s) 320, 384, 438, 641, 1890, 2913
BshVI ATCGAT 1 cut(s) 1619
BsiEI CGRYCG 1 cut(s) 385
BsiHKAI GWGCWC 5 cut(s) 135, 393, 419, 1462, 2332
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 6 cut(s) 73, 190, 251, 331, 420, 1181
BslFI GGGAC 3 cut(s) 22, 89, 502
BslI CCNNNNNNNGG 3 cut(s) 752, 1097, 1469
BsmAI GTCTC 5 cut(s) 599, 1520, 2395, 2502, 2836
BsmBI CGTCTC 1 cut(s) 2395
BsmFI GGGAC 3 cut(s) 22, 89, 502
BsmI GAATGC 1 cut(s) 3024
BsnI GGCC 6 cut(s) 320, 384, 438, 641, 1890, 2913
Bso31I GGTCTC 1 cut(s) 1520
BsoBI CYCGRG 1 cut(s) 167
Bsp119I TTCGAA 2 cut(s) 1327, 2158
Bsp1286I GDGCHC 7 cut(s) 135, 393, 419, 663, 1462, 1879, 2332
Bsp13I TCCGGA 1 cut(s) 330
Bsp1407I TGTACA 2 cut(s) 2118, 3070
Bsp1720I GCTNAGC 1 cut(s) 1023
BspACI CCGC 7 cut(s) 184, 230, 373, 381, 454, 1234, 2785
BspANI GGCC 6 cut(s) 320, 384, 438, 641, 1890, 2913
BspCNI CTCAG 6 cut(s) 189, 553, 1015, 1936, 2760, 2890
BspDI ATCGAT 1 cut(s) 1619
BspEI TCCGGA 1 cut(s) 330
BspFNI CGCG 6 cut(s) 119, 127, 129, 146, 373, 381
BspLI GGNNCC 3 cut(s) 188, 618, 2883
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 1898
BspOI GCTAGC 1 cut(s) 2045
BspPI GGATC 5 cut(s) 1760, 2684, 2755, 2950, 3269
BspT104I TTCGAA 2 cut(s) 1327, 2158
BspTI CTTAAG 2 cut(s) 401, 1066
BspTNI GGTCTC 1 cut(s) 1520
BsrDI GCAATG 2 cut(s) 972, 3084
BsrGI TGTACA 2 cut(s) 2118, 3070
BsrI ACTGG 8 cut(s) 34, 642, 663, 746, 2184, 2807, 2914, 3066
BssECI CCNNGG 4 cut(s) 224, 278, 2231, 2553
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 2553
Bst2UI CCWGG 3 cut(s) 359, 2232, 2994
Bst4CI ACNGT 3 cut(s) 82, 102, 1165
Bst6I CTCTTC 3 cut(s) 1776, 2020, 2145
BstACI GRCGYC 1 cut(s) 275
BstAFI CTTAAG 2 cut(s) 401, 1066
BstAPI GCANNNNNTGC 3 cut(s) 1622, 2051, 2474
BstAUI TGTACA 2 cut(s) 2118, 3070
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 2 cut(s) 1327, 2158
BstC8I GCNNGC 7 cut(s) 131, 454, 726, 1236, 1540, 2010, 2043
BstDEI CTNAG 7 cut(s) 176, 561, 1023, 1923, 2751, 2768, 2877
BstDSI CCRYGG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 3173
BstENI CCTNNNNNAGG 1 cut(s) 1095
BstF5I GGATG 7 cut(s) 584, 718, 962, 2375, 2599, 2806, 3228
BstFNI CGCG 6 cut(s) 119, 127, 129, 146, 373, 381
BstHHI GCGC 5 cut(s) 121, 129, 148, 373, 2468
BstMAI GTCTC 5 cut(s) 599, 1520, 2395, 2502, 2836
BstMCI CGRYCG 1 cut(s) 385
BstNI CCWGG 3 cut(s) 359, 2232, 2994
BstNSI RCATGY 4 cut(s) 1064, 1542, 2336, 2936
BstPI GGTNACC 1 cut(s) 3173
BstSCI CCNGG 5 cut(s) 72, 357, 419, 2230, 2992
BstSFI CTRYAG 1 cut(s) 460
BstSLI GKGCMC 3 cut(s) 663, 1879, 2332
BstUI CGCG 6 cut(s) 119, 127, 129, 146, 373, 381
BstV1I GCAGC 4 cut(s) 205, 1600, 1681, 2120
BstV2I GAAGAC 1 cut(s) 2912
BstX2I RGATCY 5 cut(s) 1146, 1804, 2747, 2771, 3274
BstXI CCANNNNNNTGG 2 cut(s) 514, 2557
BstYI RGATCY 5 cut(s) 1146, 1804, 2747, 2771, 3274
BstZI CGGCCG 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 1619
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 6 cut(s) 320, 384, 438, 641, 1890, 2913
BsuTUI ATCGAT 1 cut(s) 1619
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 3 cut(s) 127, 248, 433
BtsCI GGATG 7 cut(s) 584, 718, 962, 2375, 2599, 2806, 3228
BtsIMutI CAGTG 4 cut(s) 558, 670, 2787, 3073
BveI ACCTGC 1 cut(s) 1898
Cac8I GCNNGC 7 cut(s) 131, 454, 726, 1236, 1540, 2010, 2043
CfoI GCGC 5 cut(s) 121, 129, 148, 373, 2468
Cfr13I GGNCC 6 cut(s) 70, 1178, 2804, 2912, 3014, 3248
ClaI ATCGAT 1 cut(s) 1619
CseI GACGC 2 cut(s) 125, 283
Csp6I GTAC 8 cut(s) 52, 106, 1643, 1997, 2119, 2383, 2810, 3071
CviQI GTAC 8 cut(s) 52, 106, 1643, 1997, 2119, 2383, 2810, 3071
DdeI CTNAG 7 cut(s) 176, 561, 1023, 1923, 2751, 2768, 2877
DrdI GACNNNNNNGTC 1 cut(s) 440
DriI GACNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 2 cut(s) 382, 1888
EagI CGGCCG 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 1776, 2020, 2145
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 3 cut(s) 1776, 2020, 2145
Ecl136II GAGCTC 1 cut(s) 391
EclXI CGGCCG 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 2553
Eco147I AGGCCT 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 1520
Eco47I GGWCC 5 cut(s) 70, 1178, 2804, 3014, 3248
Eco52I CGGCCG 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 3 cut(s) 227, 956, 1184
Eco72I CACGTG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 3173
EcoICRI GAGCTC 1 cut(s) 391
EcoNI CCTNNNNNAGG 1 cut(s) 1095
EcoO65I GGTNACC 1 cut(s) 3173
EcoRII CCWGG 3 cut(s) 357, 2230, 2992
EcoT14I CCWWGG 1 cut(s) 2553
EcoT22I ATGCAT 2 cut(s) 784, 2338
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 2553
Esp3I CGTCTC 1 cut(s) 2395
FalI AAGNNNNNCTT 6 cut(s) 1794, 1826, 2307, 2339, 2372, 2404
FaqI GGGAC 3 cut(s) 22, 89, 502
FauI CCCGC 2 cut(s) 461, 1227
FauNDI CATATG 5 cut(s) 784, 802, 2215, 2893, 2926
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 7 cut(s) 194, 231, 382, 1614, 1695, 2109, 2786
FokI GGATG 7 cut(s) 591, 725, 969, 2362, 2606, 2813, 3215
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 7 cut(s) 194, 231, 382, 1614, 1695, 2109, 2786
FspBI CTAG 5 cut(s) 687, 807, 1626, 2042, 2412
GlaI GCGC 5 cut(s) 120, 128, 147, 372, 2467
GluI GCNGC 7 cut(s) 194, 231, 382, 1614, 1695, 2109, 2786
GsuI CTGGAG 2 cut(s) 380, 909
HaeIII GGCC 6 cut(s) 320, 384, 438, 641, 1890, 2913
HapII CCGG 6 cut(s) 73, 190, 251, 331, 420, 1181
HgaI GACGC 2 cut(s) 125, 283
HhaI GCGC 5 cut(s) 121, 129, 148, 373, 2468
Hin1I GRCGYC 1 cut(s) 275
Hin6I GCGC 5 cut(s) 119, 127, 146, 371, 2466
HinP1I GCGC 5 cut(s) 119, 127, 146, 371, 2466
HincII GTYRAC 1 cut(s) 2367
HindII GTYRAC 1 cut(s) 2367
HindIII AAGCTT 1 cut(s) 1743
HpaII CCGG 6 cut(s) 73, 190, 251, 331, 420, 1181
HphI GGTGA 7 cut(s) 614, 746, 1268, 1415, 1649, 2645, 3248
Hpy166II GTNNAC 8 cut(s) 445, 1058, 1999, 2121, 2330, 2367, 2550, 3071
Hpy188I TCNGA 6 cut(s) 246, 355, 975, 1203, 1926, 2463
Hpy8I GTNNAC 8 cut(s) 445, 1058, 1999, 2121, 2330, 2367, 2550, 3071
Hpy99I CGWCG 3 cut(s) 102, 163, 1169
HpyCH4III ACNGT 3 cut(s) 82, 102, 1165
HpyCH4IV ACGT 2 cut(s) 15, 135
HpyF3I CTNAG 7 cut(s) 176, 561, 1023, 1923, 2751, 2768, 2877
HpySE526I ACGT 2 cut(s) 15, 135
Hsp92I GRCGYC 1 cut(s) 275
HspAI GCGC 5 cut(s) 119, 127, 146, 371, 2466
Kpn2I TCCGGA 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 772
LmnI GCTCC 5 cut(s) 361, 396, 422, 1465, 2463
Lsp1109I GCAGC 4 cut(s) 205, 1600, 1681, 2120
LweI GCATC 8 cut(s) 36, 580, 769, 1249, 1625, 1883, 2398, 2477
MaeI CTAG 5 cut(s) 687, 807, 1626, 2042, 2412
MaeII ACGT 2 cut(s) 15, 135
MaeIII GTNAC 9 cut(s) 136, 271, 375, 554, 865, 1006, 1071, 2489, 3173
MfeI CAATTG 4 cut(s) 594, 1464, 2137, 2946
MflI RGATCY 5 cut(s) 1146, 1804, 2747, 2771, 3274
MhlI GDGCHC 7 cut(s) 135, 393, 419, 663, 1462, 1879, 2332
MlyI GAGTC 5 cut(s) 56, 157, 308, 1717, 2570
MmeI TCCRAC 7 cut(s) 378, 1450, 1778, 2553, 2559, 3026, 3256
Mph1103I ATGCAT 2 cut(s) 784, 2338
MroI TCCGGA 1 cut(s) 330
MroXI GAANNNNTTC 5 cut(s) 1958, 2154, 2319, 2872, 2934
MslI CAYNNNNRTG 4 cut(s) 861, 1032, 1543, 2555
MspCI CTTAAG 2 cut(s) 401, 1066
MspI CCGG 6 cut(s) 73, 190, 251, 331, 420, 1181
MspR9I CCNGG 5 cut(s) 74, 359, 421, 2232, 2994
MunI CAATTG 4 cut(s) 594, 1464, 2137, 2946
Mva1269I GAATGC 1 cut(s) 3024
MvaI CCWGG 3 cut(s) 359, 2232, 2994
MvnI CGCG 6 cut(s) 119, 127, 129, 146, 373, 381
NciI CCSGG 2 cut(s) 74, 421
NdeI CATATG 5 cut(s) 784, 802, 2215, 2893, 2926
NheI GCTAGC 1 cut(s) 2041
NlaIV GGNNCC 3 cut(s) 188, 618, 2883
NmeAIII GCCGAG 2 cut(s) 249, 322
NmuCI GTSAC 7 cut(s) 136, 271, 375, 865, 1006, 1071, 2489
NsiI ATGCAT 2 cut(s) 784, 2338
NspI RCATGY 4 cut(s) 1064, 1542, 2336, 2936
NspV TTCGAA 2 cut(s) 1327, 2158
OliI CACNNNNGTG 1 cut(s) 2555
PaeI GCATGC 1 cut(s) 1542
PceI AGGCCT 1 cut(s) 320
PciI ACATGT 2 cut(s) 1060, 2932
PctI GAATGC 1 cut(s) 3024
PdmI GAANNNNTTC 5 cut(s) 1958, 2154, 2319, 2872, 2934
PflMI CCANNNNNTGG 2 cut(s) 752, 1469
PfoI TCCNGGA 1 cut(s) 2992
PkrI GCNGC 7 cut(s) 195, 232, 383, 1615, 1696, 2110, 2787
PleI GAGTC 5 cut(s) 56, 157, 307, 1716, 2569
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 5 cut(s) 56, 157, 307, 1716, 2569
Ppu21I YACGTR 1 cut(s) 136
PscI ACATGT 2 cut(s) 1060, 2932
PsiI TTATAA 2 cut(s) 795, 1968
Psp124BI GAGCTC 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 357, 2230, 2992
PspCI CACGTG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 3173
PspGI CCWGG 3 cut(s) 357, 2230, 2992
PspN4I GGNNCC 3 cut(s) 188, 618, 2883
PspPI GGNCC 6 cut(s) 70, 1178, 2804, 2912, 3014, 3248
PstI CTGCAG 1 cut(s) 464
PsuI RGATCY 5 cut(s) 1146, 1804, 2747, 2771, 3274
RsaI GTAC 8 cut(s) 53, 107, 1644, 1998, 2120, 2384, 2811, 3072
RsaNI GTAC 8 cut(s) 52, 106, 1643, 1997, 2119, 2383, 2810, 3071
RseI CAYNNNNRTG 4 cut(s) 861, 1032, 1543, 2555
SacI GAGCTC 1 cut(s) 393
SatI GCNGC 7 cut(s) 194, 231, 382, 1614, 1695, 2109, 2786
Sau96I GGNCC 6 cut(s) 70, 1178, 2804, 2912, 3014, 3248
ScaI AGTACT 2 cut(s) 1644, 2384
SchI GAGTC 5 cut(s) 56, 157, 308, 1717, 2570
ScrFI CCNGG 5 cut(s) 74, 359, 421, 2232, 2994
SduI GDGCHC 7 cut(s) 135, 393, 419, 663, 1462, 1879, 2332
SfaNI GCATC 8 cut(s) 36, 580, 769, 1249, 1625, 1883, 2398, 2477
SfcI CTRYAG 1 cut(s) 460
SfuI TTCGAA 2 cut(s) 1327, 2158
SinI GGWCC 5 cut(s) 70, 1178, 2804, 3014, 3248
SmiMI CAYNNNNRTG 4 cut(s) 861, 1032, 1543, 2555
SphI GCATGC 1 cut(s) 1542
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 7 cut(s) 184, 230, 373, 381, 454, 1234, 2785
SspI AATATT 1 cut(s) 1599
SspMI CTAG 5 cut(s) 687, 807, 1626, 2042, 2412
SstI GAGCTC 1 cut(s) 393
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 5 cut(s) 72, 357, 419, 2230, 2992
StyI CCWWGG 1 cut(s) 2553
TaaI ACNGT 3 cut(s) 82, 102, 1165
TaiI ACGT 2 cut(s) 18, 138
TaqII GACCGA 1 cut(s) 1220
TatI WGTACW 4 cut(s) 1642, 2118, 2382, 3070
TauI GCSGC 3 cut(s) 233, 384, 2788
TscAI CASTG 4 cut(s) 565, 670, 2787, 3073
TseFI GTSAC 7 cut(s) 136, 271, 375, 865, 1006, 1071, 2489
TseI GCWGC 4 cut(s) 193, 1613, 1694, 2108
Tsp45I GTSAC 7 cut(s) 136, 271, 375, 865, 1006, 1071, 2489
TspGWI ACGGA 1 cut(s) 2339
TspRI CASTG 4 cut(s) 565, 670, 2787, 3073
Van91I CCANNNNNTGG 2 cut(s) 752, 1469
Vha464I CTTAAG 2 cut(s) 401, 1066
VneI GTGCAC 1 cut(s) 2328
VpaK11BI GGWCC 5 cut(s) 70, 1178, 2804, 3014, 3248
XagI CCTNNNNNAGG 1 cut(s) 1095
XapI RAATTY 8 cut(s) 509, 881, 998, 1192, 1881, 2449, 2920, 3265
XceI RCATGY 4 cut(s) 1064, 1542, 2336, 2936
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmnI GAANNNNTTC 5 cut(s) 1958, 2154, 2319, 2872, 2934
XspI CTAG 5 cut(s) 687, 807, 1626, 2042, 2412
ZrmI AGTACT 2 cut(s) 1644, 2384
Zsp2I ATGCAT 2 cut(s) 784, 2338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.