FvH4_6g17541

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002145
Physical Location & Seq
Reverse (-)
11465861 .. 11469262
3402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17541.t1

Sequence Viewer

Length: 1773 bp
ATGGAAATTGAAGACGATGAATTTTATTCTCTTGGAGAAACGAATGAAGAGTTGGAATATGATAGTCCAGAGGTTAATGATGATACTCAAGATCCCAGTGATAATGAACACTTCGATCTTAGTGTTGGTGAGAAGGAAGTAGAAAGTGGGAATATCCCAGTTCTTGGTATGAGTTTTAAAAGTGATGAAGCTGCATATGACTATTACAATCAATATGTTAGATATGTTGGCTTTAGTGTGCGAAAGCGAAGAAGCAACAAATATAGGAATACCGATGTGATATGGAAAAGAGAGTTTTGTTGCTCTTGTGAAGGATTCTACCAAAAAAAGAACACTCCAGAGAAAAAAAGAGAAGAAACAAGATTCGGATGCAAAGAAATACTTCAGATCAAACTTAATAAAGATGGGAAATTTGTCGTCACAAAGTTTGAAGCTGAGCATACACATGATCTTGTTCCTCGATCAAGTTCACATGCCATGAGGTCACAAAGAGGAATAGAGAATGCTCAAGCCGGTTTGATAAACCAAATGCGTTTAGCAGGGTTCACACCATCACATATCTTTTCATACCTGACGGTTGAAACAGGAGGACAAGAAAATCTAAATTTTCTTCAGACCGATTGCAATAACTTTATTCAAAGAAGACGAGCAGAGTTTTTGAAAAAAGGTATGACAACAACACAAAGAAGTGAAAGCATAAACAAGACTTTGAAAAAGTTCTTTTCTAAGAACCTTATTCTGTGTGAATGGGTCGTATACTATGAGCGTGTTTTAGTTGATCGAAGAGAGAAGGAGAGGCTTGCAGAACTTGCAACTACACAAAGAAAGCGAAAACTTTTATCAAATTGGAAGGTGGAGGGTGAAGCAGCAAGGTTGTACACAAAAGCCAGTTTCAATTGCTTTCAAGAAGAGTATCAAAAATGTTTGGACTTGATAGTAGAAAGAGGGATTGATGACGCGATAATAGAATCATATGTGGTTCAAAGACCAGGAAATCCAAACTTGAGAAGTCGACAAGAACATGAAGCAATTGGTGATATATATTCAGAGGATGATCAAGTGCATGAAAATAATGCAAATTTAGTTTTGCGTGATCCAAAAGTAAAGAAGCGTAAAAGGCACGGCAAAGACAAGAGGAACAATGATTTAGGATATAAGAAGAAGTTGAAAAAGAGATCTTCATCAGCACAACAGGAACAAGAGGATGCTCCGGTTCCCCTTATCAATGATTTGAGATCTAAGAAAATGCCAAAAAGAATATCTACATCAATACGGCAGGAACAAGAGGATACTATGGTACCCCCTGAAAAACAATGTGTATCTACGCCAAAGAAAAAGAGAGCTGCACCTAAAAAAAAAAAGGAGTACACCACATATGAACATGAGAACAAGGGCCCTTCAAATTCATATGACCATGTTCAGGGATCAGTTGGATTGGTTAATCAAAATCAAGCAAATATGCCCTTCATACGTCATGGCTTTCCAACAACTTTTGGTGCTCAAGGCATTCCCTTGCAGTATCCTTACGGACTTCCACCAACAACTTTTGGTATGCAAGCAAGGCCTAATCAATCACATGGCATTCCCTCACAATATTTTCATGGAATTCCACCAACAGCTTCTACTATTCATCCAATTCCTAGTCATTCACTTGGTTACCAACTTATTCCACCAATATCTGATTATTCTCTTGTGTATTCCCAGGCTATCCCCCAACCAAAACATGAAGGACTAGCTCGGCAACTGAAATTTTTAGATCCATCGACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

591

Amino Acids

68.06

Weight (kDa)

8.86

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 67 - 153 2.9e-22 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1297
AccB1I GGYRCC 1 cut(s) 1297
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 2 cut(s) 756, 1012
AccII CGCG 1 cut(s) 959
AclWI GGATC 4 cut(s) 86, 1088, 1432, 1751
AcsI RAATTY 7 cut(s) 20, 410, 604, 1078, 1402, 1605, 1748
AcuI CTGAAG 2 cut(s) 368, 596
AfaI GTAC 3 cut(s) 878, 1299, 1367
AfiI CCNNNNNNNGG 2 cut(s) 164, 1420
AjnI CCWGG 2 cut(s) 988, 1701
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 5 cut(s) 191, 434, 1343, 1619, 1736
AluI AGCT 5 cut(s) 191, 434, 1343, 1619, 1736
Alw21I GWGCWC 1 cut(s) 1501
AlwI GGATC 4 cut(s) 86, 1088, 1432, 1751
AoxI GGCC 2 cut(s) 1393, 1562
ApaI GGGCCC 1 cut(s) 1397
ApeKI GCWGC 3 cut(s) 191, 866, 1343
ApoI RAATTY 7 cut(s) 20, 410, 604, 1078, 1402, 1605, 1748
Asp700I GAANNNNTTC 2 cut(s) 381, 716
Asp718I GGTACC 1 cut(s) 1297
AspS9I GGNCC 2 cut(s) 1393, 1394
AsuHPI GGTGA 3 cut(s) 140, 872, 1046
BaeGI GKGCMC 1 cut(s) 1397
BaeI ACNNNNGTAYC 4 cut(s) 1281, 1281, 1314, 1314
BanI GGYRCC 1 cut(s) 1297
BanII GRGCYC 1 cut(s) 1397
BbsI GAAGAC 2 cut(s) 18, 649
Bbv12I GWGCWC 1 cut(s) 1501
BbvI GCAGC 3 cut(s) 178, 878, 1330
BccI CCATC 3 cut(s) 398, 559, 1768
BceAI ACGGC 2 cut(s) 1138, 1289
BciT130I CCWGG 2 cut(s) 990, 1703
BciVI GTATCC 2 cut(s) 1282, 1530
BclI TGATCA 1 cut(s) 1054
BfaI CTAG 2 cut(s) 1641, 1733
BfuI GTATCC 2 cut(s) 1282, 1530
BglII AGATCT 2 cut(s) 1175, 1235
BisI GCNGC 3 cut(s) 192, 867, 1344
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 3 cut(s) 193, 868, 1345
Bme1390I CCNGG 2 cut(s) 990, 1703
BmgT120I GGNCC 2 cut(s) 1393, 1394
BmiI GGNNCC 3 cut(s) 1215, 1299, 1395
BmrFI CCNGG 2 cut(s) 990, 1703
BmrI ACTGGG 2 cut(s) 90, 152
BmsI GCATC 2 cut(s) 359, 1195
BmuI ACTGGG 2 cut(s) 90, 152
BpiI GAAGAC 2 cut(s) 18, 649
BpmI CTGGAG 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 4 cut(s) 72, 492, 1024, 1485
BsaBI GATNNNNATC 1 cut(s) 1180
BsaJI CCNNGG 1 cut(s) 1701
BsaWI WCCGGW 1 cut(s) 1210
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 1420
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 96, 158, 888
Bse8I GATNNNNATC 1 cut(s) 1180
BseBI CCWGG 2 cut(s) 990, 1703
BseDI CCNNGG 1 cut(s) 1701
BseGI GGATG 4 cut(s) 374, 1057, 1210, 1630
BseJI GATNNNNATC 1 cut(s) 1180
BseLI CCNNNNNNNGG 2 cut(s) 164, 1420
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 3 cut(s) 96, 158, 888
BseSI GKGCMC 1 cut(s) 1397
BseXI GCAGC 3 cut(s) 178, 878, 1330
BsgI GTGCAG 1 cut(s) 1329
Bsh1236I CGCG 1 cut(s) 959
BshFI GGCC 2 cut(s) 1395, 1564
BshNI GGYRCC 1 cut(s) 1297
BsiHKAI GWGCWC 1 cut(s) 1501
BsiSI CCGG 2 cut(s) 513, 1211
BslI CCNNNNNNNGG 2 cut(s) 164, 1420
BsmI GAATGC 3 cut(s) 508, 1506, 1581
BsnI GGCC 2 cut(s) 1395, 1564
Bsp120I GGGCCC 1 cut(s) 1393
Bsp1286I GDGCHC 2 cut(s) 1397, 1501
Bsp1407I TGTACA 1 cut(s) 876
Bsp1720I GCTNAGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 1395, 1564
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 959
BspLI GGNNCC 3 cut(s) 1215, 1299, 1395
BspPI GGATC 4 cut(s) 86, 1088, 1432, 1751
BspT107I GGYRCC 1 cut(s) 1297
BsrFI RCCGGY 1 cut(s) 512
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 3 cut(s) 96, 158, 888
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 1701
BssNAI GTATAC 1 cut(s) 757
Bst1107I GTATAC 1 cut(s) 757
Bst2UI CCWGG 2 cut(s) 990, 1703
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 3 cut(s) 42, 778, 903
BstAPI GCANNNNNTGC 1 cut(s) 809
BstAUI TGTACA 1 cut(s) 876
BstC8I GCNNGC 2 cut(s) 801, 1557
BstDEI CTNAG 4 cut(s) 119, 435, 726, 1239
BstEII GGTNACC 1 cut(s) 1655
BstF5I GGATG 4 cut(s) 374, 1057, 1210, 1630
BstFNI CGCG 1 cut(s) 959
BstMWI GCNNNNNNNGC 3 cut(s) 809, 1117, 1561
BstNI CCWGG 2 cut(s) 990, 1703
BstNSI RCATGY 1 cut(s) 476
BstPI GGTNACC 1 cut(s) 1655
BstSCI CCNGG 2 cut(s) 988, 1701
BstSLI GKGCMC 1 cut(s) 1397
BstUI CGCG 1 cut(s) 959
BstV1I GCAGC 3 cut(s) 178, 878, 1330
BstV2I GAAGAC 2 cut(s) 18, 649
BstX2I RGATCY 4 cut(s) 91, 1175, 1235, 1756
BstYI RGATCY 4 cut(s) 91, 1175, 1235, 1756
BstZ17I GTATAC 1 cut(s) 757
BsuI GTATCC 2 cut(s) 1282, 1530
BsuRI GGCC 2 cut(s) 1395, 1564
BtsCI GGATG 4 cut(s) 374, 1057, 1210, 1630
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 801, 1557
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 2 cut(s) 1393, 1394
CseI GACGC 1 cut(s) 965
Csp6I GTAC 3 cut(s) 877, 1298, 1366
CviQI GTAC 3 cut(s) 877, 1298, 1366
DdeI CTNAG 4 cut(s) 119, 435, 726, 1239
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 3 cut(s) 42, 778, 903
EarI CTCTTC 3 cut(s) 42, 778, 903
Eco147I AGGCCT 1 cut(s) 1564
Eco24I GRGCYC 1 cut(s) 1397
Eco57I CTGAAG 2 cut(s) 368, 596
Eco91I GGTNACC 1 cut(s) 1655
EcoO109I RGGNCCY 2 cut(s) 1393, 1394
EcoO65I GGTNACC 1 cut(s) 1655
EcoRI GAATTC 1 cut(s) 1605
EcoRII CCWGG 2 cut(s) 988, 1701
EcoT38I GRGCYC 1 cut(s) 1397
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FauNDI CATATG 4 cut(s) 196, 973, 1375, 1408
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 2 cut(s) 756, 1012
Fnu4HI GCNGC 3 cut(s) 192, 867, 1344
FokI GGATG 4 cut(s) 381, 1064, 1217, 1617
FriOI GRGCYC 1 cut(s) 1397
Fsp4HI GCNGC 3 cut(s) 192, 867, 1344
FspBI CTAG 2 cut(s) 1641, 1733
GluI GCNGC 3 cut(s) 192, 867, 1344
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 2 cut(s) 1395, 1564
HapII CCGG 2 cut(s) 513, 1211
HgaI GACGC 1 cut(s) 965
HincII GTYRAC 1 cut(s) 1013
HindII GTYRAC 1 cut(s) 1013
HinfI GANTC 3 cut(s) 315, 363, 968
HpaII CCGG 2 cut(s) 513, 1211
HphI GGTGA 3 cut(s) 140, 872, 1046
Hpy166II GTNNAC 6 cut(s) 470, 546, 757, 879, 1013, 1368
Hpy188I TCNGA 5 cut(s) 368, 387, 615, 1048, 1681
Hpy188III TCNNGA 4 cut(s) 68, 89, 338, 905
Hpy8I GTNNAC 6 cut(s) 470, 546, 757, 879, 1013, 1368
HpyAV CCTTC 7 cut(s) 127, 305, 784, 844, 1407, 1474, 1721
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 1471
HpyF10VI GCNNNNNNNGC 3 cut(s) 809, 1117, 1561
HpyF3I CTNAG 4 cut(s) 119, 435, 726, 1239
HpySE526I ACGT 1 cut(s) 1471
KpnI GGTACC 1 cut(s) 1301
Ksp22I TGATCA 1 cut(s) 1054
LmnI GCTCC 1 cut(s) 1213
Lsp1109I GCAGC 3 cut(s) 178, 878, 1330
LweI GCATC 2 cut(s) 359, 1195
MaeI CTAG 2 cut(s) 1641, 1733
MaeII ACGT 1 cut(s) 1471
MaeIII GTNAC 3 cut(s) 418, 483, 1655
MfeI CAATTG 2 cut(s) 895, 1029
MflI RGATCY 4 cut(s) 91, 1175, 1235, 1756
MhlI GDGCHC 2 cut(s) 1397, 1501
MmeI TCCRAC 3 cut(s) 33, 1411, 1508
MroXI GAANNNNTTC 2 cut(s) 381, 716
MseI TTAA 5 cut(s) 75, 177, 396, 1440, 1771
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 2 cut(s) 513, 1211
MspR9I CCNGG 2 cut(s) 990, 1703
MunI CAATTG 2 cut(s) 895, 1029
Mva1269I GAATGC 3 cut(s) 508, 1506, 1581
MvaI CCWGG 2 cut(s) 990, 1703
MvnI CGCG 1 cut(s) 959
MwoI GCNNNNNNNGC 3 cut(s) 809, 1117, 1561
NdeI CATATG 4 cut(s) 196, 973, 1375, 1408
NlaIV GGNNCC 3 cut(s) 1215, 1299, 1395
NmeAIII GCCGAG 1 cut(s) 1717
NmuCI GTSAC 2 cut(s) 418, 483
NspI RCATGY 1 cut(s) 476
PceI AGGCCT 1 cut(s) 1564
PctI GAATGC 3 cut(s) 508, 1506, 1581
PdmI GAANNNNTTC 2 cut(s) 381, 716
PfeI GAWTC 3 cut(s) 315, 363, 968
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 3 cut(s) 193, 868, 1345
Psp6I CCWGG 2 cut(s) 988, 1701
PspEI GGTNACC 1 cut(s) 1655
PspGI CCWGG 2 cut(s) 988, 1701
PspN4I GGNNCC 3 cut(s) 1215, 1299, 1395
PspOMI GGGCCC 1 cut(s) 1393
PspPI GGNCC 2 cut(s) 1393, 1394
PsuI RGATCY 4 cut(s) 91, 1175, 1235, 1756
RsaI GTAC 3 cut(s) 878, 1299, 1367
RsaNI GTAC 3 cut(s) 877, 1298, 1366
RseI CAYNNNNRTG 1 cut(s) 444
SalI GTCGAC 1 cut(s) 1011
SaqAI TTAA 5 cut(s) 75, 177, 396, 1440, 1771
SatI GCNGC 3 cut(s) 192, 867, 1344
Sau96I GGNCC 2 cut(s) 1393, 1394
ScrFI CCNGG 2 cut(s) 990, 1703
SduI GDGCHC 2 cut(s) 1397, 1501
SfaNI GCATC 2 cut(s) 359, 1195
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 4 cut(s) 87, 507, 1003, 1500
SmoI CTYRAG 4 cut(s) 87, 507, 1003, 1500
SseBI AGGCCT 1 cut(s) 1564
SspI AATATT 1 cut(s) 1595
SspMI CTAG 2 cut(s) 1641, 1733
StuI AGGCCT 1 cut(s) 1564
StyD4I CCNGG 2 cut(s) 988, 1701
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 1474
TaqI TCGA 5 cut(s) 114, 460, 781, 1012, 1763
TaqII GACCGA 1 cut(s) 632
TatI WGTACW 2 cut(s) 876, 1365
TfiI GAWTC 3 cut(s) 315, 363, 968
Tru1I TTAA 5 cut(s) 75, 177, 396, 1440, 1771
Tru9I TTAA 5 cut(s) 75, 177, 396, 1440, 1771
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 418, 483
TseI GCWGC 3 cut(s) 191, 866, 1343
Tsp45I GTSAC 2 cut(s) 418, 483
TspGWI ACGGA 1 cut(s) 1542
TspRI CASTG 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 164
XapI RAATTY 7 cut(s) 20, 410, 604, 1078, 1402, 1605, 1748
XceI RCATGY 1 cut(s) 476
XmiI GTMKAC 2 cut(s) 756, 1012
XmnI GAANNNNTTC 2 cut(s) 381, 716
XspI CTAG 2 cut(s) 1641, 1733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.