Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_161

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

2049 .. 4450

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAACCATGAAGAGGATGAATTTCATGCTACATATTCCAATGATGGTAAAGAATCTGTTGATTGTATACACCTAGATTCTGATTCTAATTCTAAAAGTCTTGATCTCTTGGATCATAATGAGCAAATTGAAGAGCTCACAAGAAAATTTGGTGACATTCCAACACTTGGCATGAGTTTTGATAATGAACAGGAGGCATATCAGTATTACAATTCATATGCTAGAGGTGTTGGATTTAGTGTGAGAAAACTTAGAGTAAATAAGGATAAGAATGGTGTAATACATAAAAGAGAATTTTATTGTTCTTGTGAAGGTTTCTATAGAAAAAAGACAACTCCGAAGAAGAAAAGAGAGCAAAGAAGATTTGGATGTAAGGCAATGCTTGTGATCAAACTTAATCGAGATGGAAAATATGTTGTGAAAAACTTTGTAGCTGAACATAATCATGATCTTGTTCCATTATCAAGTTCACATTTGCTAAGGTCACAAAGAACAATAGAGCCTTGTCAAGCAGGATTCATCAATCAAATGCATCATGCAGGTCTAAAGCCATCTAAAATCTTCTCATACATGACAACAGAAGCAGGAAGGCCTCAACATTTAAATTTCATTCAAGCTTACTGCAACAATTTAATTATGAGAAAGCGCACTGAATTTCAAAACAGAGGTGACTCACAATGTTTGCTTGAATATTTCAAGCAAAAGCAAGCTCAAGATAAGTCATTCTTTTATTCTATTCAAACAAACATGGAGACTGAATCTGTGGTTGTTTTTTACATACTTTTTGGATGTGGTTTGCTAGATGGAGAGAGTACTAATGCATGTGAGTGGTTGTTTAAGGTCTTCTTACAAGCTAATGAAAGAAAAGAACCAAAAACCATATTTACCGATCACGCTCAATCAATTGCTGCTGCAATCATCGAATTCAATTTTGGCAGAGCTTTAATCTACTTCAAGCCTTGGGAGGCTTTTGAGCGGGCAAAACTGCGGCTTCTTCAGTATGAAGGGGCAGAACTGGGTGGACTTAAGGACTTAATAAGCTGGAACTACACTGTAAAATTTGTTGAGGTACTCAAACTCTGCTTGTCTTGGCTTTTGTTGAACCAAATTTGCAACGAGAGAAGTCTTGTTTTGAATGACTTATTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

384

Amino Acids

44.64

Weight (kDa)

8.18

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	2 cut(s)	976, 988
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	8 cut(s)	20, 146, 293, 604, 653, 923, 1058, 1107
AcuI	CTGAAG	1 cut(s)	980
AfaI	GTAC	2 cut(s)	814, 1071
AfiI	CCNNNNNNNGG	2 cut(s)	13, 167
AflII	CTTAAG	1 cut(s)	1025
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
AluBI	AGCT	7 cut(s)	136, 434, 617, 710, 854, 941, 1041
AluI	AGCT	7 cut(s)	136, 434, 617, 710, 854, 941, 1041
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	590
ApeKI	GCWGC	2 cut(s)	908, 911
ApoI	RAATTY	8 cut(s)	20, 146, 293, 604, 653, 923, 1058, 1107
AspLEI	GCGC	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	164, 680
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	895, 898
BccI	CCATC	4 cut(s)	38, 398, 559, 797
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	3 cut(s)	74, 222, 800
BfmI	CTRYAG	1 cut(s)	319
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	909, 912, 989
BlsI	GCNGC	3 cut(s)	910, 913, 990
BmcAI	AGTACT	1 cut(s)	814
BmrI	ACTGGG	1 cut(s)	1025
BmsI	GCATC	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	1025
BpiI	GAAGAC	1 cut(s)	835
Bpu10I	CCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	959
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 167
Bse1I	ACTGG	1 cut(s)	1020
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	959
BseGI	GGATG	3 cut(s)	22, 374, 794
BseLI	CCNNNNNNNGG	2 cut(s)	13, 167
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	1020
BseXI	GCAGC	2 cut(s)	895, 898
BshFI	GGCC	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	13, 167
BsmAI	GTCTC	1 cut(s)	746
BsnI	GGCC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	103, 112, 387, 448, 889
BspACI	CCGC	2 cut(s)	976, 988
BspANI	GGCC	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	1025
BsrBI	CCGCTC	1 cut(s)	976
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	1020
BssECI	CCNNGG	1 cut(s)	959
BssMI	GATC	5 cut(s)	103, 112, 387, 448, 889
BssNAI	GTATAC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	959
Bst1107I	GTATAC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	1054
Bst6I	CTCTTC	2 cut(s)	6, 126
BstAFI	CTTAAG	1 cut(s)	1025
BstC8I	GCNNGC	2 cut(s)	708, 978
BstDEI	CTNAG	2 cut(s)	251, 479
BstF5I	GGATG	3 cut(s)	22, 374, 794
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	5 cut(s)	106, 115, 390, 451, 892
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	5 cut(s)	103, 112, 387, 448, 889
BstNSI	RCATGY	1 cut(s)	825
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	895, 898
BstV2I	GAAGAC	1 cut(s)	835
BstZ17I	GTATAC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	592
BtsCI	GGATG	3 cut(s)	22, 374, 794
BtsIMutI	CAGTG	2 cut(s)	648, 1050
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	708, 978
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	813, 1070
CviAII	CATG	8 cut(s)	8, 26, 172, 446, 536, 571, 748, 822
CviQI	GTAC	2 cut(s)	813, 1070
DdeI	CTNAG	2 cut(s)	251, 479
DpnI	GATC	5 cut(s)	105, 114, 389, 450, 891
DpnII	GATC	5 cut(s)	103, 112, 387, 448, 889
DraI	TTTAAA	1 cut(s)	603
Eam1104I	CTCTTC	2 cut(s)	6, 126
EarI	CTCTTC	2 cut(s)	6, 126
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	959
Eco147I	AGGCCT	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	980
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	923
EcoT14I	CCWWGG	1 cut(s)	959
EcoT22I	ATGCAT	2 cut(s)	534, 823
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	959
FaeI	CATG	8 cut(s)	11, 29, 175, 449, 539, 574, 751, 825
FalI	AAGNNNNNCTT	4 cut(s)	710, 742, 830, 862
FatI	CATG	8 cut(s)	7, 25, 171, 445, 535, 570, 747, 821
FauI	CCCGC	1 cut(s)	969
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	909, 912, 989
FokI	GGATG	3 cut(s)	29, 381, 801
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	909, 912, 989
FspBI	CTAG	3 cut(s)	74, 222, 800
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	3 cut(s)	909, 912, 989
HaeIII	GGCC	1 cut(s)	592
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	8 cut(s)	11, 29, 175, 449, 539, 574, 751, 825
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	6 cut(s)	53, 77, 83, 516, 671, 758
HphI	GGTGA	2 cut(s)	164, 680
Hpy166II	GTNNAC	3 cut(s)	68, 470, 1022
Hpy188I	TCNGA	2 cut(s)	82, 339
Hpy188III	TCNNGA	4 cut(s)	101, 401, 446, 713
Hpy8I	GTNNAC	3 cut(s)	68, 470, 1022
HpyAV	CCTTC	3 cut(s)	305, 582, 998
HpyCH4III	ACNGT	1 cut(s)	1054
HpyCH4V	TGCA	6 cut(s)	532, 539, 624, 821, 914, 1113
HpyF3I	CTNAG	2 cut(s)	251, 479
Hsp92II	CATG	8 cut(s)	11, 29, 175, 449, 539, 574, 751, 825
HspAI	GCGC	1 cut(s)	646
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	103, 112, 387, 448, 889
LguI	GCTCTTC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	176, 498, 525, 570, 1001, 1027
Lsp1109I	GCAGC	2 cut(s)	895, 898
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	3 cut(s)	74, 222, 800
MaeIII	GTNAC	3 cut(s)	152, 483, 668
MalI	GATC	5 cut(s)	105, 114, 389, 450, 891
MbiI	CCGCTC	1 cut(s)	976
MboI	GATC	5 cut(s)	103, 112, 387, 448, 889
MboII	GAAGA	8 cut(s)	23, 143, 352, 355, 372, 553, 835, 986
MfeI	CAATTG	1 cut(s)	903
MhlI	GDGCHC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	185, 211
MnlI	CCTC	7 cut(s)	7, 187, 218, 603, 659, 958, 1060
Mph1103I	ATGCAT	2 cut(s)	534, 823
MseI	TTAA	7 cut(s)	396, 602, 632, 837, 944, 1026, 1034
MslI	CAYNNNNRTG	2 cut(s)	444, 826
MspCI	CTTAAG	1 cut(s)	1025
MunI	CAATTG	1 cut(s)	903
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	5 cut(s)	103, 112, 387, 448, 889
NlaIII	CATG	8 cut(s)	11, 29, 175, 449, 539, 574, 751, 825
NmuCI	GTSAC	3 cut(s)	152, 483, 668
NsiI	ATGCAT	2 cut(s)	534, 823
NspI	RCATGY	1 cut(s)	825
PagI	TCATGA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	592
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	5 cut(s)	53, 77, 83, 516, 758
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	910, 913, 990
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	138
RsaI	GTAC	2 cut(s)	814, 1071
RsaNI	GTAC	2 cut(s)	813, 1070
RseI	CAYNNNNRTG	2 cut(s)	444, 826
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	7 cut(s)	396, 602, 632, 837, 944, 1026, 1034
SatI	GCNGC	3 cut(s)	909, 912, 989
Sau3AI	GATC	5 cut(s)	103, 112, 387, 448, 889
ScaI	AGTACT	1 cut(s)	814
SchI	GAGTC	1 cut(s)	665
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	319
SmiI	ATTTAAAT	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	444, 826
SmlI	CTYRAG	2 cut(s)	711, 1025
SmoI	CTYRAG	2 cut(s)	711, 1025
SseBI	AGGCCT	1 cut(s)	592
SsiI	CCGC	2 cut(s)	976, 988
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	3 cut(s)	74, 222, 800
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	959
SwaI	ATTTAAAT	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	1054
TaqI	TCGA	2 cut(s)	400, 921
TatI	WGTACW	1 cut(s)	812
TauI	GCSGC	1 cut(s)	991
TfiI	GAWTC	5 cut(s)	53, 77, 83, 516, 758
Tru1I	TTAA	7 cut(s)	396, 602, 632, 837, 944, 1026, 1034
Tru9I	TTAA	7 cut(s)	396, 602, 632, 837, 944, 1026, 1034
TscAI	CASTG	2 cut(s)	655, 1057
TseFI	GTSAC	3 cut(s)	152, 483, 668
TseI	GCWGC	2 cut(s)	908, 911
Tsp45I	GTSAC	3 cut(s)	152, 483, 668
TspRI	CASTG	2 cut(s)	655, 1057
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	1025
XapI	RAATTY	8 cut(s)	20, 146, 293, 604, 653, 923, 1058, 1107
XceI	RCATGY	1 cut(s)	825
XmiI	GTMKAC	1 cut(s)	67
XspI	CTAG	3 cut(s)	74, 222, 800
ZrmI	AGTACT	1 cut(s)	814
Zsp2I	ATGCAT	2 cut(s)	534, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.