Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Forward (+)

47612584 .. 47616211

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGACTAGGAGCAATGTGTTTGATTTGGAACCACAGCAGACCCCCCCACTCGTTTCCAATTTTCCATCACCCATTTTTTCCAAAACTAATGCTACCAGGGCTATACGGGTTTCCGGGTCTTTAACCCGGCAACGTCCTCCATGGAGTATCCACCGCCTCCCCTCTGCGGTCAAGTGCGGTCAACTCAACAACGATGTCCGGTTATGCTACTCCAAGGCTCAATCCAAGCCGACAACAATATGTGGCCACCCGAAATCGGGGAAATTTGAGATCGAAGACCCCGTGAAGGACGATGAACTCCGATACCGATGCTTACTACCTCCAACTCCTACCGTCGACACCACCCATTCTCAAGAACCCAATTCATATGAACATGAGAAGAGTGGCCCTTCAAATTCATATGAACATGTTCAGGAACAAGAGGATGCTCCAGTACCCCCTAAAGAACAAAATGTATTTGTATCAAAGAAAAGGAAAGCTCCATCTAAAAGAAAAGATTCTCAGGAACCCAACTCATATGAACATGAGAAGACTGGCCCTTCAAATTCATATGAACATGTTCAAGGATCAATTGGATTGGTTAATCAAAATCAATCAAATATGCCCTTCATACGTCCTGAATTTCTAACAACTTTTGGTGCTCAAGGCATTCCCTCGCATTATCCTTATGGATTTCCACCAAAAACTTCTAGTGTACGAGCGATGCCTAATCAATCACATGGCATTCCCTCCCATTATCCTTATATTTCCACCAACAGGTTCTACTATTATTCATGCAATTCCAAGTCAATTGCTTGGTTACCAACCTATTCGACCAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.94

Weight (kDa)

9.07

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	3 cut(s)	154, 167, 177
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	4 cut(s)	263, 394, 544, 620
AfaI	GTAC	2 cut(s)	435, 696
AfiI	CCNNNNNNNGG	5 cut(s)	166, 256, 257, 286, 756
AflIII	ACRYGT	2 cut(s)	406, 556
AgsI	TTSAA	3 cut(s)	393, 543, 563
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw21I	GWGCWC	1 cut(s)	643
AlwI	GGATC	1 cut(s)	574
AoxI	GGCC	3 cut(s)	244, 385, 535
ApoI	RAATTY	4 cut(s)	263, 394, 544, 620
Asp700I	GAANNNNTTC	3 cut(s)	408, 496, 558
AspS9I	GGNCC	2 cut(s)	386, 536
AsuC2I	CCSGG	2 cut(s)	115, 127
AsuHPI	GGTGA	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	282, 536
Bbv12I	GWGCWC	1 cut(s)	643
BccI	CCATC	2 cut(s)	73, 490
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	158
BcnI	CCSGG	2 cut(s)	115, 127
BfaI	CTAG	2 cut(s)	6, 690
BfuI	GTATCC	1 cut(s)	158
Bme1390I	CCNGG	3 cut(s)	97, 115, 127
BmgT120I	GGNCC	2 cut(s)	386, 536
BmiI	GGNNCC	2 cut(s)	30, 507
BmrFI	CCNGG	3 cut(s)	97, 115, 127
BmsI	GCATC	3 cut(s)	299, 415, 693
BpiI	GAAGAC	2 cut(s)	282, 536
BpmI	CTGGAG	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	336, 627
BpuMI	CCSGG	2 cut(s)	115, 127
BsaJI	CCNNGG	3 cut(s)	96, 140, 213
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 256, 257, 286, 756
Bse1I	ACTGG	2 cut(s)	431, 538
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	3 cut(s)	96, 140, 213
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	5 cut(s)	166, 256, 257, 286, 756
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	431, 538
BshFI	GGCC	3 cut(s)	246, 387, 537
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	114, 127, 199
BslI	CCNNNNNNNGG	5 cut(s)	166, 256, 257, 286, 756
BsmI	GAATGC	2 cut(s)	648, 723
BsnI	GGCC	3 cut(s)	246, 387, 537
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	2 cut(s)	270, 566
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	3 cut(s)	154, 167, 177
BspANI	GGCC	3 cut(s)	246, 387, 537
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	30, 507
BspPI	GGATC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	431, 538
BssECI	CCNNGG	3 cut(s)	96, 140, 213
BssMI	GATC	2 cut(s)	270, 566
BssT1I	CCWWGG	2 cut(s)	140, 213
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	140
BstEII	GGTNACC	1 cut(s)	798
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	273, 569
BstMBI	GATC	2 cut(s)	270, 566
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	2 cut(s)	410, 560
BstPI	GGTNACC	1 cut(s)	798
BstSCI	CCNGG	3 cut(s)	95, 113, 125
BstV2I	GAAGAC	2 cut(s)	282, 536
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	246, 387, 537
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	386, 536
Csp6I	GTAC	2 cut(s)	434, 695
CviAII	CATG	7 cut(s)	141, 374, 407, 524, 557, 719, 774
CviJI	RGCY	7 cut(s)	101, 218, 229, 246, 387, 479, 537
CviKI_1	RGCY	7 cut(s)	101, 218, 229, 246, 387, 479, 537
CviQI	GTAC	2 cut(s)	434, 695
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	272, 568
DpnII	GATC	2 cut(s)	270, 566
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	140, 213
Eco91I	GGTNACC	1 cut(s)	798
EcoO65I	GGTNACC	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	140, 213
ErhI	CCWWGG	2 cut(s)	140, 213
FaeI	CATG	7 cut(s)	144, 377, 410, 527, 560, 722, 777
FatI	CATG	7 cut(s)	140, 373, 406, 523, 556, 718, 773
FauNDI	CATATG	4 cut(s)	367, 400, 517, 550
FblI	GTMKAC	1 cut(s)	336
FokI	GGATG	1 cut(s)	437
FspBI	CTAG	2 cut(s)	6, 690
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	246, 387, 537
HapII	CCGG	3 cut(s)	114, 127, 199
Hin1II	CATG	7 cut(s)	144, 377, 410, 527, 560, 722, 777
HincII	GTYRAC	2 cut(s)	182, 337
HindII	GTYRAC	2 cut(s)	182, 337
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	3 cut(s)	114, 127, 199
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	3 cut(s)	182, 337, 695
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	4 cut(s)	353, 413, 503, 617
Hpy8I	GTNNAC	3 cut(s)	182, 337, 695
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	4 cut(s)	280, 399, 549, 616
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	133, 613
HpyCH4V	TGCA	1 cut(s)	777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	2 cut(s)	133, 613
Hsp92II	CATG	7 cut(s)	144, 377, 410, 527, 560, 722, 777
Kzo9I	GATC	2 cut(s)	270, 566
LmnI	GCTCC	3 cut(s)	9, 433, 484
LweI	GCATC	3 cut(s)	299, 415, 693
MaeI	CTAG	2 cut(s)	6, 690
MaeII	ACGT	2 cut(s)	133, 613
MaeIII	GTNAC	1 cut(s)	798
MalI	GATC	2 cut(s)	272, 568
MboI	GATC	2 cut(s)	270, 566
MboII	GAAGA	3 cut(s)	287, 391, 541
MfeI	CAATTG	2 cut(s)	570, 789
MhlI	GDGCHC	1 cut(s)	643
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	9 cut(s)	58, 263, 361, 394, 544, 570, 620, 778, 789
MluNI	TGGCCA	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	7 cut(s)	147, 167, 172, 330, 415, 664, 739
Mox20I	TGGCCA	1 cut(s)	246
MroXI	GAANNNNTTC	3 cut(s)	408, 496, 558
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	2 cut(s)	122, 582
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	3 cut(s)	114, 127, 199
MspR9I	CCNGG	3 cut(s)	97, 115, 127
MunI	CAATTG	2 cut(s)	570, 789
Mva1269I	GAATGC	2 cut(s)	648, 723
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	115, 127
NcoI	CCATGG	1 cut(s)	140
NdeI	CATATG	4 cut(s)	367, 400, 517, 550
NdeII	GATC	2 cut(s)	270, 566
NlaIII	CATG	7 cut(s)	144, 377, 410, 527, 560, 722, 777
NlaIV	GGNNCC	2 cut(s)	30, 507
NspI	RCATGY	2 cut(s)	410, 560
PciI	ACATGT	2 cut(s)	406, 556
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	2 cut(s)	648, 723
PdmI	GAANNNNTTC	3 cut(s)	408, 496, 558
PfeI	GAWTC	1 cut(s)	497
PscI	ACATGT	2 cut(s)	406, 556
Psp6I	CCWGG	1 cut(s)	95
PspEI	GGTNACC	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	30, 507
PspPI	GGNCC	2 cut(s)	386, 536
RsaI	GTAC	2 cut(s)	435, 696
RsaNI	GTAC	2 cut(s)	434, 695
SalI	GTCGAC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	122, 582
Sau3AI	GATC	2 cut(s)	270, 566
Sau96I	GGNCC	2 cut(s)	386, 536
ScrFI	CCNGG	3 cut(s)	97, 115, 127
SduI	GDGCHC	1 cut(s)	643
SetI	ASST	6 cut(s)	136, 322, 481, 616, 761, 809
SfaNI	GCATC	3 cut(s)	299, 415, 693
SmlI	CTYRAG	2 cut(s)	351, 642
SmoI	CTYRAG	2 cut(s)	351, 642
Sse9I	AATT	9 cut(s)	58, 263, 361, 394, 544, 570, 620, 778, 789
SsiI	CCGC	3 cut(s)	154, 167, 177
SspMI	CTAG	2 cut(s)	6, 690
StyD4I	CCNGG	3 cut(s)	95, 113, 125
StyI	CCWWGG	2 cut(s)	140, 213
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	136, 616
TaqI	TCGA	3 cut(s)	273, 336, 812
TasI	AATT	9 cut(s)	58, 263, 361, 394, 544, 570, 620, 778, 789
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	122, 582
Tru9I	TTAA	2 cut(s)	122, 582
XapI	RAATTY	4 cut(s)	263, 394, 544, 620
XceI	RCATGY	2 cut(s)	410, 560
XmiI	GTMKAC	1 cut(s)	336
XmnI	GAANNNNTTC	3 cut(s)	408, 496, 558
XspI	CTAG	2 cut(s)	6, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.