Rroxscaffold_1G00042200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002145
Physical Location & Seq
Reverse (-)
60289435 .. 60295928
6494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042200.1

Sequence Viewer

Length: 639 bp
ATGGAAAATAAAGACGATGAATCTTGTTATCAGCATTGTAGTAACACTGAGAATGAGCAAAGAGGATGTGAAGATGATGCAATTGATGATTCTCAGGAACCCAACTCATATGAACATGAGAAGACTGGCCCTTCAAATTCATATGAACATGTTCAGGGATCAATTGGATTGGTTAATCAAAATCAATCAAATATGTCCTTCATACATCCTGGATTTCCAACAACTTTTGGTGCTCAAGGCATTCCCTCGCATTATCCTTATGGATTTACACCAACAACTTCTAGTGTACAAGCAATGCCTAATCAATCACATGACATTCCCTCGCATTTTCCTTATGGATTTCCACCAACAGCTTCTAGTGTTCATGCAATTCCAAGTCAATCACTTGGTTACCAACCTATTCGTCCAATGTTTGATTATTCACTTATGTATTCACAGGTTTCGAGTTTCTTAAAGAAAACGCAGAAGCGCAAAAAGAATCGAGGATTCATGGACGGTGGTGGCTATGACGATCACTTGCTTCTTCTAGGCCAAAGGTTTTGCCCTAAACCCAAGCTGAACAGAAAGGAGGTTCCCGGGAAAGACGACCTTATCTGCGAGTTGGATCTTTACCGTGACCAAAACCCTTGGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.01

Weight (kDa)

5.67

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 166, 612
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 353, 556
AluI AGCT 2 cut(s) 353, 556
Alw21I GWGCWC 1 cut(s) 235
AlwI GGATC 2 cut(s) 166, 612
Ama87I CYCGRG 1 cut(s) 575
AoxI GGCC 2 cut(s) 127, 529
ApoI RAATTY 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 576, 577
AvaI CYCGRG 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 2 cut(s) 576, 577
BfaI CTAG 3 cut(s) 282, 357, 527
Bme1390I CCNGG 3 cut(s) 210, 576, 577
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 99, 573
BmrFI CCNGG 3 cut(s) 210, 576, 577
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 576, 577
BsaJI CCNNGG 2 cut(s) 575, 626
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 575, 626
BseGI GGATG 2 cut(s) 71, 205
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 39, 107
BseNI ACTGG 1 cut(s) 130
BshFI GGCC 2 cut(s) 129, 531
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 1 cut(s) 576
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 2 cut(s) 129, 531
BsoBI CYCGRG 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 158, 511, 604
BspANI GGCC 2 cut(s) 129, 531
BspCNI CTCAG 2 cut(s) 40, 106
BspLI GGNNCC 2 cut(s) 99, 573
BspPI GGATC 2 cut(s) 166, 612
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 575, 626
BssMI GATC 3 cut(s) 158, 511, 604
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 497, 614
BstAUI TGTACA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 48, 93
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 2 cut(s) 71, 205
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 3 cut(s) 161, 514, 607
BstMBI GATC 3 cut(s) 158, 511, 604
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 152
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 3 cut(s) 208, 574, 575
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 2 cut(s) 129, 531
BtsCI GGATG 2 cut(s) 71, 205
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 128
Cfr9I CCCGGG 1 cut(s) 575
Csp6I GTAC 1 cut(s) 287
CviAII CATG 5 cut(s) 116, 149, 311, 365, 490
CviJI RGCY 5 cut(s) 129, 353, 504, 531, 556
CviKI_1 RGCY 5 cut(s) 129, 353, 504, 531, 556
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 48, 93
DpnI GATC 3 cut(s) 160, 513, 606
DpnII GATC 3 cut(s) 158, 511, 604
Eco130I CCWWGG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 575
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 5 cut(s) 119, 152, 314, 368, 493
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FatI CATG 5 cut(s) 115, 148, 310, 364, 489
FauNDI CATATG 2 cut(s) 109, 142
FokI GGATG 2 cut(s) 78, 192
FspBI CTAG 3 cut(s) 282, 357, 527
GlaI GCGC 1 cut(s) 470
HaeIII GGCC 2 cut(s) 129, 531
HapII CCGG 1 cut(s) 576
HhaI GCGC 1 cut(s) 471
Hin1II CATG 5 cut(s) 119, 152, 314, 368, 493
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 4 cut(s) 20, 89, 478, 486
HpaII CCGG 1 cut(s) 576
Hpy166II GTNNAC 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 141, 208
HpyCH4III ACNGT 2 cut(s) 497, 614
HpyCH4V TGCA 2 cut(s) 80, 368
HpyF3I CTNAG 2 cut(s) 48, 93
Hsp92II CATG 5 cut(s) 119, 152, 314, 368, 493
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 158, 511, 604
LpnPI CCDG 7 cut(s) 80, 111, 140, 195, 222, 422, 589
LweI GCATC 1 cut(s) 67
MaeI CTAG 3 cut(s) 282, 357, 527
MaeIII GTNAC 3 cut(s) 41, 389, 614
MalI GATC 3 cut(s) 160, 513, 606
MboI GATC 3 cut(s) 158, 511, 604
MboII GAAGA 3 cut(s) 83, 133, 515
MfeI CAATTG 2 cut(s) 81, 162
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 4 cut(s) 81, 136, 162, 369
MmeI TCCRAC 2 cut(s) 242, 582
MnlI CCTC 5 cut(s) 56, 256, 331, 476, 562
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 2 cut(s) 174, 452
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 3 cut(s) 210, 576, 577
MunI CAATTG 2 cut(s) 81, 162
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 210
NciI CCSGG 2 cut(s) 576, 577
NdeI CATATG 2 cut(s) 109, 142
NdeII GATC 3 cut(s) 158, 511, 604
NlaIII CATG 5 cut(s) 119, 152, 314, 368, 493
NlaIV GGNNCC 2 cut(s) 99, 573
NmuCI GTSAC 1 cut(s) 614
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PctI GAATGC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 4 cut(s) 20, 89, 478, 486
PfoI TCCNGGA 1 cut(s) 208
PscI ACATGT 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 208
PspEI GGTNACC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 99, 573
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 174, 452
Sau3AI GATC 3 cut(s) 158, 511, 604
Sau96I GGNCC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 210, 576, 577
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 355, 400, 441, 539, 558, 573, 591
SfaNI GCATC 1 cut(s) 67
SmaI CCCGGG 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 4 cut(s) 81, 136, 162, 369
SspMI CTAG 3 cut(s) 282, 357, 527
StyD4I CCNGG 3 cut(s) 208, 574, 575
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 2 cut(s) 497, 614
TaqI TCGA 2 cut(s) 443, 481
TasI AATT 4 cut(s) 81, 136, 162, 369
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 4 cut(s) 20, 89, 478, 486
Tru1I TTAA 2 cut(s) 174, 452
Tru9I TTAA 2 cut(s) 174, 452
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 614
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 7 cut(s) 33, 126, 129, 159, 190, 353, 478
TspMI CCCGGG 1 cut(s) 575
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 152
XmaI CCCGGG 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 3 cut(s) 282, 357, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.