Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

19751774 .. 19753799

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGCCACCACTTGCAATGAGGAGTTGGAATGGTCGAACAAGAGTCAAGCTTCGAGAGAAGCTTCGATTGGAGTTGGAATTGGCCAAGGCCGATGCTGTGGAATCTTTGGAGGCAGCGGCGGTCGAGGAGATAAAGTTGCACCGAGAATGGGTGAATGGCCTAGTTGTGGTGACGGCCCCAGAAGTACTGATTTTGGAGTTGGAAACACATTTAACAGGGGCTTTTGAGGCAAACAATTCTAAGGCTGAAGTTTGTAGGCCAACCAAAATGGTGGGAAAGGAACCTTTGAAGGTCTTGATCTCTTGGATCATAATGAGCAAAATTGAAGAGCTCACAAGAAAATTTGGTGACGTTCCAACACTTGGCATGAGTTTTGATAATGAACAGGAGGCATATCAGTATTACAATTCATATGCTATAGGTGTTGGATTTAGTGTGAGAAAACTTAGAGTAAATAAGGATAAGAATGGTGTAATACATAAAAGAGAATTTTGTTGTTCTTGTGAAGGTTTCTATAGAAAAAAGACAACTCCAAAGAAGAAAAGAGAGCAAAGAAGATTTGGATGTAAGGCAATGCTTGGGATCAAACTTAATCGAGATGGAAAATATGTTGTGAAAAACTTTGTAGCTGAACATAATCATGATCTTGTTCCATTATCAAGTTCACATTTGCTAAGGTCACAAAGAACAATAGAGCCTTGTCAAGCAGGATTCATCAATCAAATGCATCATGCAGGTCTAAAGCCATCCCAAATCTTCTCATACATGACAACAGAAGCAAGAGGGCCTCAACATTTAAATTTCATTCAAGCTTACTGCAACAATTTAATTATGAGAAAGCGCACTGAATTTCAAAACAGAGGTGACTCACAATGTTTGCTTGAATATTTCAAGCAAAAGCAAGCTCAAGATAAGTCATTCTTTTATTCTATTCAAACAAACATGGAGACTGAATCTGTGGTTGTTTTTTGTGTGATGGAAACGCAAGACGTGATTATGCTATATTTGGTGATAATCTGTGTTTTGATACGACATTCAAAACGAACAACTACAACATGGTACATACTTTTTGGATGTGGTTTGCTAGATGGAGAGAGTACTAATGCATGTGAGTGGTTGTTTAAGGTCTTCTTACAAGCTAATGAAAGAAAAGAACCAAAAACCATATTTACCGATCACGCTCAATCAATTGCTGCTGCAATCATCGAAGTATTTCCGAATTGCCATAACCGACTTTGCTTGTGGCATATATATCAGAATGTTGCAAGGAACTTGGGTCATGTTTTTTATGAGTTTCAAGCATTCGCAAAAGATTTTAAAAGTTGTGTATATGATCCAGAGATTGTTGAAGAATTTGAATCAAGTTGGGAAGCTTTACTTGATGATTATGGATTGAGAGGAAATAGTTGGCTAGAAGGAATATATGCATTGCGTGAGAAATGGAATTTTTGTTCATTATTTACTTTATGTCAATCTAACTATCGTTTAATTGTTTTACAACGTCTAAGGAAATTAATTTATTTGCACGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

512

Amino Acids

59.44

Weight (kDa)

8.87

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	2 cut(s)	116, 119
AclWI	GGATC	3 cut(s)	314, 590, 1328
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	6 cut(s)	341, 488, 799, 848, 1352, 1444
AcuI	CTGAAG	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	1528
AfaI	GTAC	3 cut(s)	186, 1061, 1099
AfiI	CCNNNNNNNGG	3 cut(s)	148, 166, 362
AjiI	CACGTC	1 cut(s)	991
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AloI	GAACNNNNNNTCC	2 cut(s)	1435, 1467
AluBI	AGCT	8 cut(s)	49, 61, 331, 629, 812, 905, 1139, 1373
AluI	AGCT	8 cut(s)	49, 61, 331, 629, 812, 905, 1139, 1373
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	941
AlwI	GGATC	3 cut(s)	314, 590, 1328
AoxI	GGCC	6 cut(s)	81, 87, 157, 174, 257, 785
ApeKI	GCWGC	3 cut(s)	113, 1193, 1196
ApoI	RAATTY	6 cut(s)	341, 488, 799, 848, 1352, 1444
AseI	ATTAAT	1 cut(s)	1514
Asp700I	GAANNNNTTC	1 cut(s)	1212
AspLEI	GCGC	1 cut(s)	843
AspS9I	GGNCC	2 cut(s)	175, 785
AsuHPI	GGTGA	5 cut(s)	163, 181, 359, 875, 1021
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	1528
BbsI	GAAGAC	1 cut(s)	1120
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	125, 1180, 1183
BccI	CCATC	4 cut(s)	593, 754, 970, 1082
BceAI	ACGGC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	941
BfaI	CTAG	3 cut(s)	161, 1085, 1412
BfmI	CTRYAG	2 cut(s)	417, 514
BfuAI	ACCTGC	1 cut(s)	725
BisI	GCNGC	4 cut(s)	114, 117, 1194, 1197
BlsI	GCNGC	4 cut(s)	115, 118, 1195, 1198
BmcAI	AGTACT	2 cut(s)	186, 1099
BmgBI	CACGTC	1 cut(s)	991
BmgT120I	GGNCC	2 cut(s)	175, 785
BmiI	GGNNCC	2 cut(s)	177, 282
BmsI	GCATC	2 cut(s)	82, 736
BpiI	GAAGAC	1 cut(s)	1120
Bpu10I	CCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	891
BsaAI	YACGTR	1 cut(s)	1528
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 166, 362
Bse3DI	GCAATG	3 cut(s)	21, 579, 1427
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	569, 746, 1079
BseLI	CCNNNNNNNGG	3 cut(s)	148, 166, 362
BseMI	GCAATG	3 cut(s)	21, 579, 1427
BseRI	GAGGAG	2 cut(s)	34, 140
BseXI	GCAGC	3 cut(s)	125, 1180, 1183
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	6 cut(s)	83, 89, 159, 176, 259, 787
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	148, 166, 362
BsmAI	GTCTC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	1301
BsnI	GGCC	6 cut(s)	83, 89, 159, 176, 259, 787
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
BspACI	CCGC	2 cut(s)	116, 119
BspANI	GGCC	6 cut(s)	83, 89, 159, 176, 259, 787
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	177, 282
BspMI	ACCTGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	314, 590, 1328
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	3 cut(s)	21, 579, 1427
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
BssT1I	CCWWGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	1528
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	4 cut(s)	240, 446, 674, 1505
BstF5I	GGATG	3 cut(s)	569, 746, 1079
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	6 cut(s)	300, 309, 585, 646, 1177, 1336
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	1110
BstSFI	CTRYAG	2 cut(s)	417, 514
BstV1I	GCAGC	3 cut(s)	125, 1180, 1183
BstV2I	GAAGAC	1 cut(s)	1120
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	6 cut(s)	83, 89, 159, 176, 259, 787
BtrI	CACGTC	1 cut(s)	991
BtsCI	GGATG	3 cut(s)	569, 746, 1079
BtsIMutI	CAGTG	1 cut(s)	843
BveI	ACCTGC	1 cut(s)	725
Cac8I	GCNNGC	1 cut(s)	903
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	843
Cfr13I	GGNCC	2 cut(s)	175, 785
Csp6I	GTAC	3 cut(s)	185, 1060, 1098
CviAII	CATG	8 cut(s)	367, 641, 731, 766, 943, 1056, 1107, 1280
CviQI	GTAC	3 cut(s)	185, 1060, 1098
DdeI	CTNAG	4 cut(s)	240, 446, 674, 1505
DpnI	GATC	6 cut(s)	299, 308, 584, 645, 1176, 1335
DpnII	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
DraI	TTTAAA	2 cut(s)	798, 1318
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	267
Eco72I	CACGTG	1 cut(s)	1528
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	3 cut(s)	729, 1108, 1429
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	8 cut(s)	370, 644, 734, 769, 946, 1059, 1110, 1283
FalI	AAGNNNNNCTT	6 cut(s)	905, 937, 1115, 1147, 1362, 1394
FatI	CATG	8 cut(s)	366, 640, 730, 765, 942, 1055, 1106, 1279
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	114, 117, 1194, 1197
FokI	GGATG	3 cut(s)	576, 733, 1086
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	4 cut(s)	114, 117, 1194, 1197
FspBI	CTAG	3 cut(s)	161, 1085, 1412
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	4 cut(s)	114, 117, 1194, 1197
HaeIII	GGCC	6 cut(s)	83, 89, 159, 176, 259, 787
HhaI	GCGC	1 cut(s)	843
Hin1II	CATG	8 cut(s)	370, 644, 734, 769, 946, 1059, 1110, 1283
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HindIII	AAGCTT	4 cut(s)	47, 59, 810, 1371
HinfI	GANTC	6 cut(s)	42, 101, 711, 866, 953, 1358
HphI	GGTGA	5 cut(s)	163, 181, 359, 875, 1021
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	2 cut(s)	1218, 1257
Hpy188III	TCNNGA	6 cut(s)	53, 295, 596, 641, 908, 1337
Hpy8I	GTNNAC	1 cut(s)	665
HpyAV	CCTTC	3 cut(s)	283, 500, 1409
HpyCH4IV	ACGT	4 cut(s)	351, 990, 1501, 1527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	4 cut(s)	240, 446, 674, 1505
HpySE526I	ACGT	4 cut(s)	351, 990, 1501, 1527
Hsp92II	CATG	8 cut(s)	370, 644, 734, 769, 946, 1059, 1110, 1283
HspAI	GCGC	1 cut(s)	841
Kzo9I	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
LguI	GCTCTTC	1 cut(s)	321
LpnPI	CCDG	6 cut(s)	192, 201, 371, 693, 720, 1350
Lsp1109I	GCAGC	3 cut(s)	125, 1180, 1183
LweI	GCATC	2 cut(s)	82, 736
MaeI	CTAG	3 cut(s)	161, 1085, 1412
MaeII	ACGT	4 cut(s)	351, 990, 1501, 1527
MaeIII	GTNAC	4 cut(s)	169, 347, 678, 863
MalI	GATC	6 cut(s)	299, 308, 584, 645, 1176, 1335
MboI	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
MboII	GAAGA	6 cut(s)	338, 550, 567, 748, 1120, 1361
MfeI	CAATTG	1 cut(s)	1188
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	51, 860
MmeI	TCCRAC	5 cut(s)	5, 54, 180, 380, 406
MnlI	CCTC	9 cut(s)	12, 103, 118, 220, 382, 776, 798, 854, 1391
Mox20I	TGGCCA	1 cut(s)	83
Mph1103I	ATGCAT	3 cut(s)	729, 1108, 1429
MroXI	GAANNNNTTC	1 cut(s)	1212
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	8 cut(s)	212, 591, 797, 827, 1122, 1317, 1487, 1514
MslI	CAYNNNNRTG	2 cut(s)	639, 1111
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	1188
Mva1269I	GAATGC	1 cut(s)	1301
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
NlaIII	CATG	8 cut(s)	370, 644, 734, 769, 946, 1059, 1110, 1283
NlaIV	GGNNCC	2 cut(s)	177, 282
NmuCI	GTSAC	4 cut(s)	169, 347, 678, 863
NsiI	ATGCAT	3 cut(s)	729, 1108, 1429
NspI	RCATGY	1 cut(s)	1110
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	1 cut(s)	1301
PdmI	GAANNNNTTC	1 cut(s)	1212
PfeI	GAWTC	4 cut(s)	101, 711, 953, 1358
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	115, 118, 1195, 1198
PleI	GAGTC	2 cut(s)	50, 860
PmaCI	CACGTG	1 cut(s)	1528
PmlI	CACGTG	1 cut(s)	1528
PpsI	GAGTC	2 cut(s)	50, 860
Ppu21I	YACGTR	1 cut(s)	1528
PshBI	ATTAAT	1 cut(s)	1514
Psp124BI	GAGCTC	1 cut(s)	333
PspCI	CACGTG	1 cut(s)	1528
PspN4I	GGNNCC	2 cut(s)	177, 282
PspPI	GGNCC	2 cut(s)	175, 785
RsaI	GTAC	3 cut(s)	186, 1061, 1099
RsaNI	GTAC	3 cut(s)	185, 1060, 1098
RseI	CAYNNNNRTG	2 cut(s)	639, 1111
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	8 cut(s)	212, 591, 797, 827, 1122, 1317, 1487, 1514
SatI	GCNGC	4 cut(s)	114, 117, 1194, 1197
Sau3AI	GATC	6 cut(s)	297, 306, 582, 643, 1174, 1333
Sau96I	GGNCC	2 cut(s)	175, 785
ScaI	AGTACT	2 cut(s)	186, 1099
SchI	GAGTC	2 cut(s)	51, 860
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	82, 736
SfcI	CTRYAG	2 cut(s)	417, 514
SmiI	ATTTAAAT	1 cut(s)	798
SmiMI	CAYNNNNRTG	2 cut(s)	639, 1111
SmlI	CTYRAG	1 cut(s)	906
SmoI	CTYRAG	1 cut(s)	906
SsiI	CCGC	2 cut(s)	116, 119
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	3 cut(s)	161, 1085, 1412
SstI	GAGCTC	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	84
SwaI	ATTTAAAT	1 cut(s)	798
TaiI	ACGT	4 cut(s)	354, 993, 1504, 1530
TaqI	TCGA	6 cut(s)	34, 52, 64, 123, 595, 1206
TatI	WGTACW	2 cut(s)	184, 1097
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	4 cut(s)	101, 711, 953, 1358
Tru1I	TTAA	8 cut(s)	212, 591, 797, 827, 1122, 1317, 1487, 1514
Tru9I	TTAA	8 cut(s)	212, 591, 797, 827, 1122, 1317, 1487, 1514
TscAI	CASTG	1 cut(s)	850
TseFI	GTSAC	4 cut(s)	169, 347, 678, 863
TseI	GCWGC	3 cut(s)	113, 1193, 1196
Tsp45I	GTSAC	4 cut(s)	169, 347, 678, 863
TspDTI	ATGAA	6 cut(s)	396, 399, 703, 793, 1158, 1443
TspRI	CASTG	1 cut(s)	850
Van91I	CCANNNNNTGG	1 cut(s)	362
VspI	ATTAAT	1 cut(s)	1514
XapI	RAATTY	6 cut(s)	341, 488, 799, 848, 1352, 1444
XceI	RCATGY	1 cut(s)	1110
XmnI	GAANNNNTTC	1 cut(s)	1212
XspI	CTAG	3 cut(s)	161, 1085, 1412
ZrmI	AGTACT	2 cut(s)	186, 1099
Zsp2I	ATGCAT	3 cut(s)	729, 1108, 1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.