Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

8367182 .. 8372098

Gene Structure 4917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAAATAAAGACGATGAATCTTGTTATCAGCATTGTAGTAACATTGAGAATGAGCAAAGAGGATGTGAAGATGATGCAATTGATGGTGAGACTAATGAGGAACCTGAATATGATACTCAAGAGGCCAGTAGCGATACTCAAGTGCCCAGTGATGATGAACACGTGGATTCTGGTTTAGAAGGTTTATGTATCTTGGATGGTAAGAAGCAAGCAGGAGGACCGGGTAATTTTTGTAGCCACCGCCTTCTGCGCATCACATCGCGAAGAAAAACAAAGGGTGTTTTATCGAACCAATCTGAGGCCGCCTCAGATAGATTTTTGAAATTGCATGATAAGCTTACGGATGCTACTCCAAAACGCTCTGTGAGAAATTTGAAGGAGAAGCTCAAGCATGGTGCGAGGAAGAGTCTGAGGCACGTGGCTGTGATCATGGATGGCAATGTGAGGTTCGGTCATGAGGCATGTGGTGGGCATAAAGAAATCTTGTTGAGCAATGATCTGTGTTGGAAATATGCATCTGAGGGGAGCTCTATTTGTGATTCAATTGGTCAGGGACTATGGAATAAAATGAAGCTTTTTGATGCAGAACAGTCCACTTTCAGTGCTTTGGCTGGCACCGCAACTGAGGCGATTGTTTCTTGGCCAATTCACCGTGTAATTTGGCATGATGCAGAAGCTATTTGGGCTGCAATAAGTTTGGTGAATCCTAGGTTGGTAGATGCAATGAAGCTATCATTCAAATTACTTATTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.0

Weight (kDa)

5.66

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	617
AccII	CGCG	1 cut(s)	265
AciI	CCGC	3 cut(s)	244, 306, 621
AcoI	YGGCCR	1 cut(s)	644
AcsI	RAATTY	1 cut(s)	373
AcvI	CACGTG	2 cut(s)	166, 421
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	325, 379, 546, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	6 cut(s)	340, 388, 531, 577, 680, 733
AluI	AGCT	6 cut(s)	340, 388, 531, 577, 680, 733
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	3 cut(s)	126, 303, 644
ApeKI	GCWGC	1 cut(s)	689
ApoI	RAATTY	1 cut(s)	373
AspA2I	CCTAGG	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	101, 644, 715
AvaII	GGWCC	1 cut(s)	221
AvrII	CCTAGG	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BalI	TGGCCA	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	533
BbrPI	CACGTG	2 cut(s)	166, 421
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	676
BccI	CCATC	3 cut(s)	80, 194, 431
BclI	TGATCA	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	711
BisI	GCNGC	2 cut(s)	306, 690
BlnI	CCTAGG	1 cut(s)	710
BlsI	GCNGC	2 cut(s)	307, 691
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	105, 619
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	7 cut(s)	67, 264, 337, 527, 574, 661, 712
BmuI	ACTGGG	1 cut(s)	144
BplI	GAGNNNNNCTC	4 cut(s)	293, 325, 515, 547
BpuEI	CTTGAG	3 cut(s)	105, 126, 374
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	2 cut(s)	166, 421
BsaJI	CCNNGG	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	129, 150
Bse3DI	GCAATG	3 cut(s)	448, 502, 732
BseDI	CCNNGG	1 cut(s)	710
BseGI	GGATG	4 cut(s)	71, 205, 352, 442
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	3 cut(s)	448, 502, 732
BseMII	CTCAG	5 cut(s)	291, 324, 404, 513, 618
BseNI	ACTGG	2 cut(s)	129, 150
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	3 cut(s)	128, 305, 646
BshNI	GGYRCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	3 cut(s)	128, 305, 646
Bsp1286I	GDGCHC	2 cut(s)	150, 533
Bsp143I	GATC	2 cut(s)	429, 499
Bsp68I	TCGCGA	1 cut(s)	265
BspACI	CCGC	3 cut(s)	244, 306, 621
BspANI	GGCC	3 cut(s)	128, 305, 646
BspCNI	CTCAG	5 cut(s)	292, 323, 405, 514, 619
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	105, 619
BspT107I	GGYRCC	1 cut(s)	617
BsrDI	GCAATG	3 cut(s)	448, 502, 732
BsrI	ACTGG	2 cut(s)	129, 150
BssECI	CCNNGG	1 cut(s)	710
BssMI	GATC	2 cut(s)	429, 499
BssT1I	CCWWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	594, 656
Bst6I	CTCTTC	1 cut(s)	401
BstBAI	YACGTR	2 cut(s)	166, 421
BstC8I	GCNNGC	2 cut(s)	213, 616
BstDEI	CTNAG	5 cut(s)	300, 310, 413, 522, 627
BstF5I	GGATG	4 cut(s)	71, 205, 352, 442
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	432, 502
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	429, 499
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 337, 620, 629, 686
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	128, 305, 646
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	71, 205, 352, 442
BtsIMutI	CAGTG	2 cut(s)	157, 610
BtuMI	TCGCGA	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	213, 616
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	6 cut(s)	332, 395, 433, 458, 465, 668
DdeI	CTNAG	5 cut(s)	300, 310, 413, 522, 627
DpnI	GATC	2 cut(s)	431, 501
DpnII	GATC	2 cut(s)	429, 499
EaeI	YGGCCR	1 cut(s)	644
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	710
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	531
Eco72I	CACGTG	2 cut(s)	166, 421
EcoICRI	GAGCTC	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	710
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	6 cut(s)	335, 398, 436, 461, 468, 671
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	6 cut(s)	331, 394, 432, 457, 464, 667
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	306, 690
FokI	GGATG	4 cut(s)	78, 212, 359, 449
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	306, 690
FspBI	CTAG	1 cut(s)	711
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	306, 690
HaeIII	GGCC	3 cut(s)	128, 305, 646
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	335, 398, 436, 461, 468, 671
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	338, 575
HinfI	GANTC	5 cut(s)	20, 170, 409, 542, 706
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	101, 644, 715
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	4 cut(s)	301, 313, 414, 523
Hpy188III	TCNNGA	3 cut(s)	122, 264, 458
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	3 cut(s)	176, 257, 373
HpyCH4III	ACNGT	2 cut(s)	594, 656
HpyCH4IV	ACGT	2 cut(s)	165, 420
HpyCH4V	TGCA	7 cut(s)	80, 331, 518, 587, 674, 692, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 337, 620, 629, 686
HpyF3I	CTNAG	5 cut(s)	300, 310, 413, 522, 627
HpySE526I	ACGT	2 cut(s)	165, 420
Hsp92II	CATG	6 cut(s)	335, 398, 436, 461, 468, 671
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	429, 499
LmnI	GCTCC	1 cut(s)	528
LpnPI	CCDG	8 cut(s)	120, 142, 159, 163, 201, 237, 539, 600
Lsp1109I	GCAGC	1 cut(s)	676
LweI	GCATC	7 cut(s)	67, 264, 337, 527, 574, 661, 712
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	165, 420
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	431, 501
MboI	GATC	2 cut(s)	429, 499
MboII	GAAGA	3 cut(s)	83, 279, 418
MfeI	CAATTG	2 cut(s)	81, 546
MhlI	GDGCHC	2 cut(s)	150, 533
MlsI	TGGCCA	1 cut(s)	646
MluCI	AATT	8 cut(s)	81, 229, 326, 373, 546, 648, 660, 743
MluNI	TGGCCA	1 cut(s)	646
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	488
Mox20I	TGGCCA	1 cut(s)	646
Mph1103I	ATGCAT	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	646
MseI	TTAA	1 cut(s)	757
Msp20I	TGGCCA	1 cut(s)	646
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	2 cut(s)	81, 546
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	5 cut(s)	252, 337, 620, 629, 686
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	2 cut(s)	429, 499
NlaIII	CATG	6 cut(s)	335, 398, 436, 461, 468, 671
NlaIV	GGNNCC	2 cut(s)	105, 619
NruI	TCGCGA	1 cut(s)	265
NsbI	TGCGCA	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	468
PagI	TCATGA	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	20, 170, 542, 706
PkrI	GCNGC	2 cut(s)	307, 691
PleI	GAGTC	1 cut(s)	417
PmaCI	CACGTG	2 cut(s)	166, 421
PmlI	CACGTG	2 cut(s)	166, 421
PpsI	GAGTC	1 cut(s)	417
Ppu21I	YACGTR	2 cut(s)	166, 421
Psp124BI	GAGCTC	1 cut(s)	533
PspCI	CACGTG	2 cut(s)	166, 421
PspN4I	GGNNCC	2 cut(s)	105, 619
PspPI	GGNCC	1 cut(s)	221
RruI	TCGCGA	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	757
SatI	GCNGC	2 cut(s)	306, 690
Sau3AI	GATC	2 cut(s)	429, 499
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	150, 533
SfaNI	GCATC	7 cut(s)	67, 264, 337, 527, 574, 661, 712
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	3 cut(s)	120, 141, 389
SmoI	CTYRAG	3 cut(s)	120, 141, 389
Sse9I	AATT	8 cut(s)	81, 229, 326, 373, 546, 648, 660, 743
SsiI	CCGC	3 cut(s)	244, 306, 621
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	2 cut(s)	594, 656
TaiI	ACGT	2 cut(s)	168, 423
TaqI	TCGA	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	8 cut(s)	81, 229, 326, 373, 546, 648, 660, 743
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	4 cut(s)	20, 170, 542, 706
Tru1I	TTAA	1 cut(s)	757
Tru9I	TTAA	1 cut(s)	757
TscAI	CASTG	2 cut(s)	157, 610
TseI	GCWGC	1 cut(s)	689
TspDTI	ATGAA	5 cut(s)	33, 174, 587, 743, 743
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	157, 610
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	468
XmaJI	CCTAGG	1 cut(s)	710
XspI	CTAG	1 cut(s)	711
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.