Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004459.1

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3974

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1780 bp

attgacagagtgcatagtaattgggacacaagcctacaccaccaaattcatggaaaataaagacgatgaatcttgttatcagcattgtagtaacactgagaatgagcaaagaggatgtgaagatgatgcaattgatggtgagactaataaggaacctgaatatgatactcaagaggctagtagcgatactcaagtgcccagtgatgatgaacacgtggattctggtttagaaggtttatgtatcttggatggtaagaagcaagtaagaggtgagaatatcccagttcttgggttcaaaccatcacagatcttttcatacctgaccgtcaaagcaggaggaccggaaaatctaaatttccttcagaccgattgcaataacttcattcaaagaaggcgggcaaagtttttgaaaaaaggtgaagctcaatgtttgcttgattactttaagaagaagcaaatggaggataagtcatttttttatgcaattcgaacaaacatcgacaatgaaatatgtggttgttttttttgtgatggaaaatcaaggagtgattatgctatatttggtgatgcggttgtctttgatacaaccttcaaaaccaacaagtacgacatggtttctgctccaattgttggagttaatcatcatggtcaaacaattctatttggctgtggattattagatggggagaccacagaggcatgcaaatggttctttgatgttttcctacaagctatgggaggaaaaaaaccaaagacaatatttacagatcaagctgcatcgattgctagtgcatttaaggaagtactacctaattctcaccatcgtctttgtttgtggcacatatatcaaaatgctgcaaaacacttgagtcaagtctttacgaagtgctccacattttcacaatctttcaaaagttgcatatatgatccagagagtgttgaagagtttgaatcaagttggaaagatctacttgattactatgatttgaaagaaaatgagtggctaaaagacttgtataacttgcgtgagaagtgggcacaaatttatggccaatgcaacgtttgtgcagttgatcgaagagaaaaggagaggctcgcggaagttgcaactacgcaaagaaagccaaaacttctgtctaattggaaagtggaggttgaagcagcaaagatgtacacaaaagcgagtttcaatcgttttcaagaagagtttcgaaaatgtttcgacttgatactggaattagagagtgatgacgggagaatagaatcatatgtggttcaaagaccagggaatccaaacttgagaagacgagatgctagacaaggagttgatcttaaatgttatggggaagcaaattttagtgatcggagtgcatcttctgcactccaatatagtcacttgtcttatatagcacaaagaattgtagcaaaaggtgcaaaggataagcaatcatccaccttggtagagtctaaattgttggagttggaggcagaattggatggcaatttatccattggacaagaacatgaaacaaattgtgatatagattcagaagatcaagtgaatgaaaataatgcaaatctggttttgcgtgatccaaaagttaagaggcgtagaaggcgtggcaaaggtaagagaaataatgatttgggatctaagaagcaatcaaaaacgagatcttcatcagtgccacaagaacaagatgatagtccagtaccccttaaagaacaaaatgtctctgtatcaaagaaaaggaaagctccatctaaaagaaaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

592

Amino Acids

67.51

Weight (kDa)

6.18

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	288, 630
AccII	CGCG	1 cut(s)	1098
AciI	CCGC	3 cut(s)	395, 570, 1098
AclI	AACGTT	1 cut(s)	1060
AclWI	GGATC	3 cut(s)	921, 1587, 1658
AcoI	YGGCCR	1 cut(s)	1049
AcsI	RAATTY	4 cut(s)	45, 353, 1042, 1352
AcuI	CTGAAG	1 cut(s)	345
AcvI	CACGTG	1 cut(s)	215
AfaI	GTAC	4 cut(s)	606, 805, 1173, 1714
AfiI	CCNNNNNNNGG	2 cut(s)	288, 630
AflIII	ACRYGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	1283
AluBI	AGCT	4 cut(s)	423, 732, 774, 1758
AluI	AGCT	4 cut(s)	423, 732, 774, 1758
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	3 cut(s)	135, 681, 1739
AlwI	GGATC	3 cut(s)	921, 1587, 1658
AoxI	GGCC	1 cut(s)	1049
ApeKI	GCWGC	3 cut(s)	774, 855, 1161
ApoI	RAATTY	4 cut(s)	45, 353, 1042, 1352
ArsI	GACNNNNNNTTYG	2 cut(s)	1119, 1151
Asp700I	GAANNNNTTC	1 cut(s)	1207
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	5 cut(s)	150, 282, 429, 576, 810
AsuII	TTCGAA	2 cut(s)	488, 1211
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	2 cut(s)	199, 1040
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BalI	TGGCCA	1 cut(s)	1051
BbrPI	CACGTG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	1310
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	761, 842, 1173
BccI	CCATC	8 cut(s)	129, 243, 308, 525, 675, 829, 1491, 1769
BciT130I	CCWGG	1 cut(s)	1285
BcoDI	GTCTC	3 cut(s)	135, 681, 1739
BfaI	CTAG	3 cut(s)	178, 787, 1315
BglII	AGATCT	3 cut(s)	307, 965, 1674
BisI	GCNGC	3 cut(s)	775, 856, 1162
BlsI	GCNGC	3 cut(s)	776, 857, 1163
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	1 cut(s)	1285
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	1285
BmrI	ACTGGG	2 cut(s)	193, 276
BmsI	GCATC	5 cut(s)	116, 557, 786, 1301, 1380
BmuI	ACTGGG	2 cut(s)	193, 276
BpiI	GAAGAC	1 cut(s)	1310
Bpu14I	TTCGAA	2 cut(s)	488, 1211
BpuEI	CTTGAG	4 cut(s)	154, 175, 887, 1319
Bsa29I	ATCGAT	1 cut(s)	780
BsaAI	YACGTR	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	1679
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	1284, 1456
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 630
Bse1I	ACTGG	4 cut(s)	199, 282, 1237, 1710
Bse8I	GATNNNNATC	1 cut(s)	1679
BseBI	CCWGG	1 cut(s)	1285
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	1284, 1456
BseGI	GGATG	4 cut(s)	120, 254, 1449, 1502
BseJI	GATNNNNATC	1 cut(s)	1679
BseLI	CCNNNNNNNGG	2 cut(s)	288, 630
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	4 cut(s)	199, 282, 1237, 1710
BseSI	GKGCMC	2 cut(s)	199, 1040
BseXI	GCAGC	3 cut(s)	761, 842, 1173
BsgI	GTGCAG	2 cut(s)	1087, 1363
Bsh1236I	CGCG	1 cut(s)	1098
BshFI	GGCC	1 cut(s)	1051
BshVI	ATCGAT	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	288, 630
BsmAI	GTCTC	3 cut(s)	135, 681, 1739
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	1051
Bso31I	GGTCTC	1 cut(s)	681
Bsp119I	TTCGAA	2 cut(s)	488, 1211
Bsp1286I	GDGCHC	3 cut(s)	199, 891, 1040
Bsp1407I	TGTACA	1 cut(s)	1171
BspACI	CCGC	3 cut(s)	395, 570, 1098
BspANI	GGCC	1 cut(s)	1051
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	780
BspFNI	CGCG	1 cut(s)	1098
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	3 cut(s)	921, 1587, 1658
BspT104I	TTCGAA	2 cut(s)	488, 1211
BspTNI	GGTCTC	1 cut(s)	681
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	4 cut(s)	199, 282, 1237, 1710
BssECI	CCNNGG	2 cut(s)	1284, 1456
BssT1I	CCWWGG	1 cut(s)	1456
Bst2UI	CCWGG	1 cut(s)	1285
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	3 cut(s)	937, 1073, 1198
BstAPI	GCANNNNNTGC	3 cut(s)	783, 1377, 1431
BstAUI	TGTACA	1 cut(s)	1171
BstBAI	YACGTR	1 cut(s)	215
BstBI	TTCGAA	2 cut(s)	488, 1211
BstC8I	GCNNGC	3 cut(s)	397, 701, 1096
BstDEI	CTNAG	2 cut(s)	97, 1654
BstF5I	GGATG	4 cut(s)	120, 254, 1449, 1502
BstFNI	CGCG	1 cut(s)	1098
BstMAI	GTCTC	3 cut(s)	135, 681, 1739
BstMWI	GCNNNNNNNGC	6 cut(s)	783, 1104, 1121, 1377, 1431, 1616
BstNI	CCWGG	1 cut(s)	1285
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	1283
BstSLI	GKGCMC	2 cut(s)	199, 1040
BstUI	CGCG	1 cut(s)	1098
BstV1I	GCAGC	3 cut(s)	761, 842, 1173
BstV2I	GAAGAC	1 cut(s)	1310
BstX2I	RGATCY	4 cut(s)	307, 965, 1650, 1674
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	4 cut(s)	307, 965, 1650, 1674
Bsu15I	ATCGAT	1 cut(s)	780
BsuRI	GGCC	1 cut(s)	1051
BsuTUI	ATCGAT	1 cut(s)	780
BtsCI	GGATG	4 cut(s)	120, 254, 1449, 1502
BtsIMutI	CAGTG	3 cut(s)	94, 206, 1690
Cac8I	GCNNGC	3 cut(s)	397, 701, 1096
Cfr13I	GGNCC	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	780
Csp6I	GTAC	4 cut(s)	605, 804, 1172, 1713
CviAII	CATG	5 cut(s)	50, 611, 645, 700, 1524
CviQI	GTAC	4 cut(s)	605, 804, 1172, 1713
DdeI	CTNAG	2 cut(s)	97, 1654
EaeI	YGGCCR	1 cut(s)	1049
Eam1104I	CTCTTC	3 cut(s)	937, 1073, 1198
EarI	CTCTTC	3 cut(s)	937, 1073, 1198
Eco130I	CCWWGG	1 cut(s)	1456
Eco31I	GGTCTC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	345
Eco72I	CACGTG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	1283
EcoT14I	CCWWGG	1 cut(s)	1456
ErhI	CCWWGG	1 cut(s)	1456
FaeI	CATG	5 cut(s)	53, 614, 648, 703, 1527
FalI	AAGNNNNNCTT	2 cut(s)	955, 987
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	49, 610, 644, 699, 1523
FauI	CCCGC	1 cut(s)	388
FauNDI	CATATG	1 cut(s)	1268
Fnu4HI	GCNGC	3 cut(s)	775, 856, 1162
FokI	GGATG	4 cut(s)	127, 261, 1436, 1509
Fsp4HI	GCNGC	3 cut(s)	775, 856, 1162
FspBI	CTAG	3 cut(s)	178, 787, 1315
GluI	GCNGC	3 cut(s)	775, 856, 1162
HaeIII	GGCC	1 cut(s)	1051
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	5 cut(s)	53, 614, 648, 703, 1527
HinfI	GANTC	8 cut(s)	69, 219, 869, 951, 1263, 1289, 1464, 1545
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	5 cut(s)	150, 282, 429, 576, 810
Hpy166II	GTNNAC	1 cut(s)	1174
Hpy188I	TCNGA	3 cut(s)	364, 1366, 1550
Hpy188III	TCNNGA	3 cut(s)	171, 930, 1200
Hpy8I	GTNNAC	1 cut(s)	1174
HpyAV	CCTTC	5 cut(s)	225, 369, 385, 599, 1609
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	214, 1060
HpyF10VI	GCNNNNNNNGC	6 cut(s)	783, 1104, 1121, 1377, 1431, 1616
HpyF3I	CTNAG	2 cut(s)	97, 1654
HpySE526I	ACGT	2 cut(s)	214, 1060
Hsp92II	CATG	5 cut(s)	53, 614, 648, 703, 1527
LmnI	GCTCC	3 cut(s)	626, 894, 1763
Lsp1109I	GCAGC	3 cut(s)	761, 842, 1173
LweI	GCATC	5 cut(s)	116, 557, 786, 1301, 1380
MaeI	CTAG	3 cut(s)	178, 787, 1315
MaeII	ACGT	2 cut(s)	214, 1060
MaeIII	GTNAC	2 cut(s)	90, 1392
MboII	GAAGA	9 cut(s)	132, 461, 954, 1090, 1215, 1315, 1366, 1563, 1669
MfeI	CAATTG	2 cut(s)	130, 625
MflI	RGATCY	4 cut(s)	307, 965, 1650, 1674
MhlI	GDGCHC	3 cut(s)	199, 891, 1040
MlsI	TGGCCA	1 cut(s)	1051
MluNI	TGGCCA	1 cut(s)	1051
MlyI	GAGTC	2 cut(s)	878, 1473
MmeI	TCCRAC	4 cut(s)	611, 939, 1456, 1462
Mox20I	TGGCCA	1 cut(s)	1051
MroXI	GAANNNNTTC	1 cut(s)	1207
MscI	TGGCCA	1 cut(s)	1051
MseI	TTAA	6 cut(s)	445, 637, 796, 1333, 1603, 1720
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	1051
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	1285
MunI	CAATTG	2 cut(s)	130, 625
MvaI	CCWGG	1 cut(s)	1285
MvnI	CGCG	1 cut(s)	1098
MwoI	GCNNNNNNNGC	6 cut(s)	783, 1104, 1121, 1377, 1431, 1616
NdeI	CATATG	1 cut(s)	1268
NlaIII	CATG	5 cut(s)	53, 614, 648, 703, 1527
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	1392
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	2 cut(s)	488, 1211
PaeI	GCATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	1207
PfeI	GAWTC	6 cut(s)	69, 219, 951, 1263, 1289, 1545
PflMI	CCANNNNNTGG	2 cut(s)	288, 630
PkrI	GCNGC	3 cut(s)	776, 857, 1163
PleI	GAGTC	2 cut(s)	877, 1472
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
PpsI	GAGTC	2 cut(s)	877, 1472
Ppu21I	YACGTR	1 cut(s)	215
Psp1406I	AACGTT	1 cut(s)	1060
Psp6I	CCWGG	1 cut(s)	1283
PspCI	CACGTG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	1283
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	4 cut(s)	307, 965, 1650, 1674
RsaI	GTAC	4 cut(s)	606, 805, 1173, 1714
RsaNI	GTAC	4 cut(s)	605, 804, 1172, 1713
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	6 cut(s)	445, 637, 796, 1333, 1603, 1720
SatI	GCNGC	3 cut(s)	775, 856, 1162
Sau96I	GGNCC	1 cut(s)	339
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	2 cut(s)	878, 1473
ScrFI	CCNGG	1 cut(s)	1285
SduI	GDGCHC	3 cut(s)	199, 891, 1040
SfaNI	GCATC	5 cut(s)	116, 557, 786, 1301, 1380
SfuI	TTCGAA	2 cut(s)	488, 1211
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	4 cut(s)	169, 190, 866, 1298
SmoI	CTYRAG	4 cut(s)	169, 190, 866, 1298
SphI	GCATGC	1 cut(s)	703
SsiI	CCGC	3 cut(s)	395, 570, 1098
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	3 cut(s)	178, 787, 1315
StyD4I	CCNGG	1 cut(s)	1283
StyI	CCWWGG	1 cut(s)	1456
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	217, 1063
TaqI	TCGA	6 cut(s)	488, 499, 780, 1076, 1211, 1222
TaqII	GACCGA	1 cut(s)	381
TatI	WGTACW	2 cut(s)	803, 1171
TfiI	GAWTC	6 cut(s)	69, 219, 951, 1263, 1289, 1545
Tru1I	TTAA	6 cut(s)	445, 637, 796, 1333, 1603, 1720
Tru9I	TTAA	6 cut(s)	445, 637, 796, 1333, 1603, 1720
TscAI	CASTG	3 cut(s)	101, 206, 1690
TseFI	GTSAC	1 cut(s)	1392
TseI	GCWGC	3 cut(s)	774, 855, 1161
Tsp45I	GTSAC	1 cut(s)	1392
TspDTI	ATGAA	9 cut(s)	38, 82, 223, 304, 371, 520, 1540, 1579, 1669
TspRI	CASTG	3 cut(s)	101, 206, 1690
Van91I	CCANNNNNTGG	2 cut(s)	288, 630
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	4 cut(s)	45, 353, 1042, 1352
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	1207
XspI	CTAG	3 cut(s)	178, 787, 1315
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.