Rh5CG298700
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002145
Physical Location & Seq
Forward (+)
32901453 .. 32903190
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG298700.1

Sequence Viewer

Length: 294 bp
ATGCAGGGGAAGGGGAGGCCAAGAGTAGAACTCTTCAACTATCAGGAACTTCTGTCTTCTGTAGATACTCTATTGCTGATGAGGCAGCCATTGGTTTCGAGATTCTTAAAGAAAACGGAGAAGCACAAAAAGAATCGAGGATTCATGGACGGTGGTGGCTATGACGGTCACTTGCTTCTTCCAGGCCAAAGGTTTTGCCCTAAACCCAAGCTGAACGGCAAGGAGGTGCCCGGGAAAGACGACCTTATCTGCGAGTTGGATCTTTACGGTGACCAAGACCCTTGGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

97

Amino Acids

11.16

Weight (kDa)

9.17

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AclWI GGATC 1 cut(s) 267
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 17, 184
ApeKI GCWGC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 231, 232
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 2 cut(s) 231, 232
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 3 cut(s) 183, 231, 232
BmeT110I CYCGRG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 3 cut(s) 183, 231, 232
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpuMI CCSGG 2 cut(s) 231, 232
BsaJI CCNNGG 2 cut(s) 230, 281
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 230, 281
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 19, 186
BshNI GGYRCC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 231
BsnI GGCC 2 cut(s) 19, 186
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 259
BspANI GGCC 2 cut(s) 19, 186
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 230, 281
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 3 cut(s) 152, 167, 269
Bst6I CTCTTC 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 269
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 183
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 181, 229, 230
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 2 cut(s) 19, 186
Cfr9I CCCGGG 1 cut(s) 230
CviAII CATG 1 cut(s) 145
CviJI RGCY 5 cut(s) 19, 88, 159, 186, 211
CviKI_1 RGCY 5 cut(s) 19, 88, 159, 186, 211
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 146, 162
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 19, 186
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 148
HinfI GANTC 3 cut(s) 102, 133, 141
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 44, 99
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 3 cut(s) 152, 167, 269
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 29, 168, 195, 244
Lsp1109I GCAGC 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 167, 269
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 3 cut(s) 25, 48, 170
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 9, 75, 131, 217
MseI TTAA 1 cut(s) 107
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 183, 231, 232
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 2 cut(s) 231, 232
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 167, 269
PfeI GAWTC 3 cut(s) 102, 133, 141
PkrI GCNGC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 181
PspEI GGTNACC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 259
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 259
ScrFI CCNGG 3 cut(s) 183, 231, 232
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 194, 213, 228, 246
SfcI CTRYAG 1 cut(s) 60
SmaI CCCGGG 1 cut(s) 232
StyD4I CCNGG 3 cut(s) 181, 229, 230
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 3 cut(s) 152, 167, 269
TaqI TCGA 2 cut(s) 98, 136
TfiI GAWTC 3 cut(s) 102, 133, 141
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseFI GTSAC 2 cut(s) 167, 269
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 2 cut(s) 167, 269
TspDTI ATGAA 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 131
TspMI CCCGGG 1 cut(s) 230
XmaI CCCGGG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.